Initializing AMReX (26.06-23-g6de3ba7ac2ba)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 Initializing CUDA... CUDA initialized with 1 device. AMReX (26.06-23-g6de3ba7ac2ba) initialized REMORA git hash: v1.6-2-g4c07cf1 AMReX git hash: 26.06-23-g6de3ba7ac2 Making level 0 from scratch GRIDS AT LEVEL 0 ARE (BoxArray maxbox(4) m_ref->m_hash_sig(0) ((0,0,0) (4,7,19) (0,0,0)) ((5,0,0) (9,7,19) (0,0,0)) ((0,8,0) (4,15,19) (0,0,0)) ((5,8,0) (9,15,19) (0,0,0)) ) Calling init_masks_from_netcdf level 0 Loading masks from NetCDF file idmini_grd_v1_classic64.nc Masks loaded from netcdf file Calling init_bdry_from_netcdf at level 0 DOING INIT AT LEVEL 0 Setting up boundary data for u coming from NetCDF file Setting up boundary data for v coming from NetCDF file Setting up boundary data for temp coming from NetCDF file Setting up boundary data for salt coming from NetCDF file Setting up boundary data for ubar coming from NetCDF file Setting up boundary data for vbar coming from NetCDF file Setting up boundary data for zeta coming from NetCDF file Boundary data loaded from netcdf file Calling init_bathymetry_from_netcdf Loading initial bathymetry from NetCDF file idmini_grd_v1_classic64.nc Bathymetry loaded from netcdf file Calling init_grid_vars_from_netcdf Loading grid variables from NetCDF file idmini_grd_v1_classic64.nc Grid variables loaded from netcdf file Loading grid variables from NetCDF file idmini_grd_v1_classic64.nc Calling init_zeta_from_netcdf on level 0 Loading initial sea surface height from NetCDF file idmini_ini_v1_classic64.nc Reading in zeta at (before) time 0 Actually reading in zeta at time 0 DONE reading in zeta at time 0 Reading in zeta at (after) time 1 Actually reading in zeta at time 86400 DONE reading in zeta at time 86400 Sea surface height loaded from netcdf file Calling init_data_from_netcdf Loading initial solution data from NetCDF file idmini_ini_v1_classic64.nc Initial data loaded from netcdf file Reading in ubar at (before) time 0 Actually reading in ubar at time 0 DONE reading in ubar at time 0 Reading in ubar at (after) time 1 Actually reading in ubar at time 86400 DONE reading in ubar at time 86400 Reading in vbar at (before) time 0 Actually reading in vbar at time 0 DONE reading in vbar at time 0 Reading in vbar at (after) time 1 Actually reading in vbar at time 86400 DONE reading in vbar at time 86400 Calling init_coriolis_from_netcdf Loading initial coriolis from NetCDF file idmini_grd_v1_classic64.nc Coriolis loaded from netcdf file Reading in temp at (before) time 0 Actually reading in temp at time 0 DONE reading in temp at time 0 Reading in temp at (after) time 1 Actually reading in temp at time 86400 DONE reading in temp at time 86400 Reading in salt at (before) time 0 Actually reading in salt at time 0 DONE reading in salt at time 0 Reading in salt at (after) time 1 Actually reading in salt at time 86400 DONE reading in salt at time 86400 Reading in u at (before) time 0 Actually reading in u at time 0 DONE reading in u at time 0 Reading in u at (after) time 1 Actually reading in u at time 86400 DONE reading in u at time 86400 Reading in v at (before) time 0 Actually reading in v at time 0 DONE reading in v at time 0 Reading in v at (after) time 1 Actually reading in v at time 86400 DONE reading in v at time 86400 Writing plotfile IdealMiniGrid_plt00000 Coarse STEP 1 starts ... Coarse STEP 1 ends. TIME = 200 DT = 200 Coarse STEP 2 starts ... Coarse STEP 2 ends. TIME = 400 DT = 200 Coarse STEP 3 starts ... Coarse STEP 3 ends. TIME = 600 DT = 200 Coarse STEP 4 starts ... Coarse STEP 4 ends. TIME = 800 DT = 200 Coarse STEP 5 starts ... Coarse STEP 5 ends. TIME = 1000 DT = 200 Coarse STEP 6 starts ... Coarse STEP 6 ends. TIME = 1200 DT = 200 Coarse STEP 7 starts ... Coarse STEP 7 ends. TIME = 1400 DT = 200 Coarse STEP 8 starts ... Coarse STEP 8 ends. TIME = 1600 DT = 200 Coarse STEP 9 starts ... Coarse STEP 9 ends. TIME = 1800 DT = 200 Coarse STEP 10 starts ... Coarse STEP 10 ends. TIME = 2000 DT = 200 Writing plotfile IdealMiniGrid_plt00010 TinyProfiler total time across processes [min...avg...max]: 1.304 ... 1.317 ... 1.329 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- FillBoundary_finish() 579 0.2065 0.2146 0.2213 16.65% FillBoundary_nowait() 579 0.2136 0.2159 0.2181 16.41% REMORA::advance_3d() 10 0.09891 0.09932 0.09986 7.51% REMORA::FillPatch() 188 0.06382 0.06744 0.07168 5.39% REMORA::advance2d() 30 0.0667 0.06693 0.06711 5.05% REMORA::vert_visc_3d() 50 0.06379 0.06386 0.06393 4.81% FabArray::setVal() 170 0.06219 0.06274 0.06311 4.75% REMORA::init_only() 1 0.05685 0.05761 0.058 4.36% REMORAPhysBCFunct::() 219 0.0457 0.05084 0.05777 4.35% REMORA::rhs_t_3d() 30 0.04395 0.04398 0.04401 3.31% REMORA::InitData() 2 0.03548 0.03722 0.03942 2.97% REMORA::setup_step() 10 0.03386 0.03416 0.03462 2.61% REMORA::rhs_uv_3d() 10 0.02709 0.0271 0.02712 2.04% REMORA::bathymetry() 1 0.02607 0.02636 0.0265 1.99% DistributionMapping::LeastUsedCPUs() 1 9.137e-06 0.01131 0.02399 1.81% REMORA::estTimeStep() 11 0.01879 0.02152 0.02306 1.74% REMORA::prestep() 10 0.01948 0.02009 0.02078 1.56% REMORA::t3dmix2_s() 20 0.01848 0.0186 0.01867 1.40% impose_cons_bcs() 60 0.01414 0.01639 0.01784 1.34% amrex::Copy() 52 0.01618 0.01685 0.01726 1.30% REMORA::stretch_transform() 11 0.01578 0.01581 0.01582 1.19% REMORA::prestep_t_advection() 30 0.01395 0.01448 0.01491 1.12% impose_yvel_bcs() 42 0.008011 0.0105 0.01356 1.02% REMORA::uv3dmix() 30 0.01238 0.01253 0.01261 0.95% impose_xvel_bcs() 42 0.009195 0.01054 0.01206 0.91% VisMF::Write(FabArray) 4 0.006537 0.0083 0.01136 0.85% MultiFab::contains_nan() 10 0.008933 0.009634 0.01016 0.76% REMORA::Evolve() 1 0.00876 0.009309 0.01008 0.76% REMORA::update_massflux_3d() 20 0.007777 0.008129 0.008629 0.65% REMORA::rhs_uv_2d() 20 0.007614 0.007881 0.008232 0.62% MultiFab::contains_inf() 10 0.007279 0.007281 0.007283 0.55% REMORA::set_zeta() 1 0.004664 0.00483 0.005011 0.38% REMORA::set_analytic_vmix() 11 0.003929 0.004084 0.004536 0.34% REMORA::prsgrd() 10 0.004002 0.004062 0.004181 0.31% REMORA::set_zeta_to_Ztavg() 11 0.003912 0.003937 0.003964 0.30% REMORA::advance_3d_ml() 10 0.003637 0.003649 0.003662 0.28% WriteMultiLevelPlotfileWithBathymetry() 2 0.000579 0.001019 0.002005 0.15% FillPatchSingleLevel 360 0.0003922 0.0004215 0.0004669 0.04% REMORA::set_hmixcoef() 1 0.0003674 0.000368 0.0003688 0.03% FabArray::FillBoundary() 576 0.0003257 0.0003451 0.0003667 0.03% main() 1 0.0001696 0.0001806 0.0001906 0.01% REMORA::FillPatchNoBC() 172 9.194e-05 9.753e-05 0.0001076 0.01% REMORA::Advance() 10 3.097e-05 3.226e-05 3.544e-05 0.00% MultiFab::Copy() 39 1.315e-05 1.39e-05 1.43e-05 0.00% REMORA::set_smflux() 10 9.905e-06 1.114e-05 1.207e-05 0.00% AmrMesh::MakeDistributionMap() 1 2.362e-06 4.283e-06 5.18e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 2.186e-06 3.268e-06 4.287e-06 0.00% REMORA::init_set_vmix() 1 1.048e-06 1.179e-06 1.248e-06 0.00% Other 878 0.005825 0.006125 0.006716 0.51% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 1.304 1.316 1.329 100.00% REMORA::Evolve() 1 1.068 1.069 1.069 80.46% REMORA::Advance() 10 1.019 1.02 1.02 76.77% FabArray::FillBoundary() 576 0.4238 0.4306 0.4392 33.04% REMORA::advance_3d_ml() 10 0.4029 0.4036 0.4048 30.46% REMORA::setup_step() 10 0.3601 0.3615 0.3631 27.32% REMORA::advance_3d() 10 0.314 0.315 0.3155 23.74% REMORA::FillPatch() 188 0.2823 0.2849 0.2881 21.68% FillPatchSingleLevel 360 0.2637 0.2695 0.2755 20.73% REMORA::InitData() 2 0.2352 0.2477 0.2605 19.60% REMORA::advance2d() 30 0.2539 0.2547 0.2554 19.22% FillBoundary_finish() 579 0.2065 0.2146 0.2213 16.65% FillBoundary_nowait() 579 0.214 0.2164 0.2185 16.44% REMORA::init_only() 1 0.1491 0.1496 0.1503 11.31% REMORA::FillPatchNoBC() 172 0.125 0.1278 0.1299 9.77% REMORAPhysBCFunct::() 219 0.08329 0.08828 0.09418 7.09% REMORA::vert_visc_3d() 50 0.06379 0.06386 0.06393 4.81% FabArray::setVal() 170 0.06219 0.06274 0.06311 4.75% REMORA::set_analytic_vmix() 11 0.06023 0.0612 0.06242 4.70% REMORA::stretch_transform() 11 0.04717 0.04818 0.04864 3.66% REMORA::prestep() 10 0.04455 0.04572 0.04684 3.52% REMORA::bathymetry() 1 0.04502 0.0452 0.04538 3.41% REMORA::rhs_t_3d() 30 0.04487 0.04489 0.04491 3.38% REMORA::rhs_uv_3d() 10 0.02709 0.0271 0.02712 2.04% AmrMesh::MakeDistributionMap() 1 1.771e-05 0.01132 0.024 1.81% DistributionMapping::SFCProcessorMapDoIt() 1 1.276e-05 0.01131 0.024 1.81% DistributionMapping::LeastUsedCPUs() 1 9.137e-06 0.01131 0.02399 1.81% REMORA::estTimeStep() 11 0.01879 0.02152 0.02306 1.74% REMORA::t3dmix2_s() 20 0.01848 0.0186 0.01867 1.40% impose_cons_bcs() 60 0.01414 0.01639 0.01784 1.34% amrex::Copy() 52 0.01618 0.01685 0.01726 1.30% REMORA::prestep_t_advection() 30 0.01395 0.01448 0.01491 1.12% MultiFab::Copy() 39 0.01279 0.01332 0.01384 1.04% impose_yvel_bcs() 42 0.008011 0.0105 0.01356 1.02% WriteMultiLevelPlotfileWithBathymetry() 2 0.008564 0.00976 0.01262 0.95% REMORA::uv3dmix() 30 0.01238 0.01253 0.01261 0.95% REMORA::set_zeta_to_Ztavg() 11 0.0117 0.01216 0.01259 0.95% impose_xvel_bcs() 42 0.009195 0.01054 0.01206 0.91% VisMF::Write(FabArray) 4 0.006537 0.0083 0.01136 0.85% MultiFab::contains_nan() 10 0.008933 0.009634 0.01016 0.76% REMORA::update_massflux_3d() 20 0.007777 0.008129 0.008629 0.65% REMORA::rhs_uv_2d() 20 0.007614 0.007881 0.008232 0.62% MultiFab::contains_inf() 10 0.007279 0.007281 0.007283 0.55% REMORA::set_smflux() 10 0.007032 0.007033 0.007035 0.53% REMORA::set_zeta() 1 0.006652 0.006743 0.007016 0.53% REMORA::set_hmixcoef() 1 0.00606 0.006074 0.006089 0.46% REMORA::init_set_vmix() 1 0.005388 0.005697 0.005825 0.44% REMORA::prsgrd() 10 0.004002 0.004062 0.004181 0.31% Other 878 0.00971 0.01121 0.01246 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] Device Memory Usage: ---------------------------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max CurrentMem max ---------------------------------------------------------------------------------------------------------------------------------------------- The_Arena::Initialize() 4 4 397 B 479 B 633 B 1024 MiB 1024 MiB 1024 MiB 0 B ResizeRandomSeed 4 4 9154 KiB 9163 KiB 9172 KiB 9216 KiB 9216 KiB 9216 KiB 0 B REMORA::InitData() 352 320 921 KiB 922 KiB 922 KiB 1242 KiB 1242 KiB 1242 KiB 375 KiB REMORA::advance_3d() 760 760 18 KiB 18 KiB 18 KiB 150 KiB 150 KiB 150 KiB 0 B REMORA::prestep_t_advection() 120 120 1261 B 1313 B 1368 B 135 KiB 135 KiB 135 KiB 0 B REMORA::init_only() 28 28 166 B 169 B 178 B 130 KiB 130 KiB 130 KiB 0 B REMORA::Evolve() 12 12 1261 B 1292 B 1356 B 114 KiB 114 KiB 114 KiB 0 B REMORA::prestep() 160 160 2456 B 2510 B 2568 B 102 KiB 102 KiB 102 KiB 0 B REMORA::prsgrd() 40 40 615 B 643 B 669 B 101 KiB 101 KiB 101 KiB 0 B REMORA::setup_step() 240 240 14 KiB 14 KiB 14 KiB 97 KiB 97 KiB 97 KiB 0 B VisMF::Write(FabArray) 64 64 247 B 305 B 329 B 96 KiB 96 KiB 96 KiB 0 B REMORA::rhs_t_3d() 480 480 1720 B 1753 B 1800 B 85 KiB 85 KiB 85 KiB 0 B REMORA::uv3dmix() 120 120 406 B 414 B 422 B 67 KiB 67 KiB 67 KiB 0 B REMORA::estTimeStep() 132 132 461 B 502 B 522 B 67 KiB 67 KiB 67 KiB 0 B REMORA::t3dmix2_s() 160 160 315 B 318 B 321 B 36 KiB 36 KiB 36 KiB 0 B FillBoundary_nowait() 472 436 24 KiB 24 KiB 25 KiB 35 KiB 35 KiB 36 KiB 7168 B FillBoundary_finish() 472 436 24 KiB 24 KiB 25 KiB 35 KiB 35 KiB 36 KiB 7168 B REMORA::rhs_uv_3d() 160 160 552 B 553 B 554 B 33 KiB 33 KiB 33 KiB 0 B WriteMultiLevelPlotfileWithBathymetry() 8 8 141 B 184 B 252 B 31 KiB 31 KiB 31 KiB 0 B REMORA::advance2d() 480 480 2529 B 2537 B 2546 B 17 KiB 17 KiB 17 KiB 0 B REMORA::bathymetry() 84 84 305 B 306 B 307 B 17 KiB 17 KiB 17 KiB 0 B MultiFab::contains_nan() 52 48 208 B 208 B 208 B 6656 B 6656 B 6656 B 256 B MultiFab::contains_inf() 40 40 20 B 22 B 25 B 6144 B 6144 B 6144 B 0 B REMORA::rhs_uv_2d() 80 80 36 B 36 B 36 B 3584 B 3584 B 3584 B 0 B REMORA::update_massflux_3d() 80 80 10 B 10 B 11 B 2048 B 2048 B 2048 B 0 B REMORA::set_zeta() 4 4 4 B 4 B 5 B 1792 B 1792 B 1792 B 0 B REMORA::set_coriolis() 4 4 1 B 1 B 2 B 1792 B 1792 B 1792 B 0 B REMORAPhysBCFunct::() 300 300 2 B 2 B 3 B 256 B 256 B 256 B 0 B impose_cons_bcs() 240 240 2 B 2 B 2 B 256 B 256 B 256 B 0 B impose_xvel_bcs() 168 168 1 B 1 B 1 B 256 B 256 B 256 B 0 B impose_yvel_bcs() 168 168 1 B 1 B 2 B 256 B 256 B 256 B 0 B ---------------------------------------------------------------------------------------------------------------------------------------------- Async Memory Usage: ------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max ------------------------------------------------------------------------------------------------------------- REMORA::prsgrd() 40 261 B 265 B 273 B 101 KiB 101 KiB 101 KiB REMORA::advance_3d() 600 5887 B 5891 B 5896 B 70 KiB 70 KiB 70 KiB REMORA::prestep_t_advection() 120 609 B 632 B 651 B 67 KiB 67 KiB 67 KiB REMORA::rhs_t_3d() 480 1217 B 1227 B 1235 B 67 KiB 67 KiB 67 KiB REMORA::uv3dmix() 120 193 B 196 B 198 B 67 KiB 67 KiB 67 KiB REMORA::rhs_uv_3d() 160 467 B 467 B 468 B 33 KiB 33 KiB 33 KiB REMORA::t3dmix2_s() 160 206 B 209 B 215 B 29 KiB 29 KiB 29 KiB REMORA::setup_step() 80 733 B 733 B 734 B 18 KiB 18 KiB 18 KiB REMORA::prestep() 40 206 B 214 B 220 B 17 KiB 17 KiB 17 KiB REMORA::rhs_uv_2d() 80 16 B 16 B 17 B 3456 B 3456 B 3456 B REMORA::advance2d() 120 8 B 8 B 8 B 1232 B 1232 B 1232 B REMORA::update_massflux_3d() 80 4 B 4 B 4 B 864 B 864 B 864 B ------------------------------------------------------------------------------------------------------------- Managed Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- The_Managed_Arena::Initialize() 4 2 B 2 B 3 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: ------------------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max CurrentMem max ------------------------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 4 6 B 6 B 7 B 8192 KiB 8192 KiB 8192 KiB 0 B REMORA::init_only() 364 364 97 KiB 97 KiB 97 KiB 159 KiB 159 KiB 159 KiB 0 B FillBoundary_nowait() 5088 5052 27 KiB 27 KiB 27 KiB 78 KiB 79 KiB 79 KiB 7168 B FillBoundary_finish() 472 436 24 KiB 24 KiB 25 KiB 35 KiB 35 KiB 36 KiB 7168 B VisMF::Write(FabArray) 80 80 14 B 17 B 22 B 31 KiB 31 KiB 31 KiB 0 B REMORA::bathymetry() 84 84 18 B 20 B 24 B 1792 B 1792 B 1792 B 0 B REMORA::set_coriolis() 4 4 0 B 0 B 1 B 1792 B 1792 B 1792 B 0 B REMORA::set_zeta() 4 4 0 B 0 B 1 B 1792 B 1792 B 1792 B 0 B MultiFab::contains_nan() 52 48 181 B 181 B 182 B 768 B 768 B 768 B 256 B REMORA::estTimeStep() 88 88 3 B 3 B 3 B 512 B 512 B 512 B 0 B MultiFab::contains_inf() 40 40 0 B 0 B 1 B 256 B 256 B 256 B 0 B ------------------------------------------------------------------------------------------------------------------------------------- Total GPU global memory (MB) spread across MPI: [7965 ... 7965] Free GPU global memory (MB) spread across MPI: [3315 ... 3315] [The Arena] max space (MB) allocated spread across MPI: [1024 ... 1024] [The Arena] max space (MB) used spread across MPI: [10 ... 10] [The Managed Arena] max space (MB) allocated spread across MPI: [8 ... 8] [The Managed Arena] max space (MB) used spread across MPI: [0 ... 0] [The Pinned Arena] max space (MB) allocated spread across MPI: [8 ... 8] [The Pinned Arena] max space (MB) used spread across MPI: [0 ... 0] AMReX (26.06-23-g6de3ba7ac2ba) finalized