Initializing AMReX (26.08-28-g19e6fba747b6)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 Initializing CUDA... CUDA initialized with 1 device. AMReX (26.08-28-g19e6fba747b6) initialized REMORA git hash: v1.6-234-g5064316 AMReX git hash: 26.08-28-g19e6fba747 [REMORA] Active E-P source: bulk evap-rain diagnostic. Making level 0 from scratch GRIDS AT LEVEL 0 ARE (BoxArray maxbox(4) m_ref->m_hash_sig(0) ((0,0,0) (1,1,29) (0,0,0)) ((2,0,0) (3,1,29) (0,0,0)) ((0,2,0) (1,3,29) (0,0,0)) ((2,2,0) (3,3,29) (0,0,0)) ) Calling init_masks_from_netcdf level 0 Loading masks from NetCDF file bio_toy_grd_classic64.nc Masks loaded from netcdf file Loading Uwind from NetCDF file(s) Loading Vwind from NetCDF file(s) Loading Tair from NetCDF file(s) Loading qair from NetCDF file(s) Loading Pair from NetCDF file(s) Loading swrad from NetCDF file(s) Loading rain from NetCDF file(s) Calling init_bathymetry_from_netcdf Loading initial bathymetry from NetCDF file bio_toy_grd_classic64.nc Bathymetry loaded from netcdf file Calling init_grid_vars_from_netcdf Loading grid variables from NetCDF file bio_toy_grd_classic64.nc Loading spherical psi coordinates from NetCDF file bio_toy_grd_classic64.nc Grid variables loaded from netcdf file Loading grid variables from NetCDF file bio_toy_grd_classic64.nc Loading spherical psi coordinates from NetCDF file bio_toy_grd_classic64.nc Calling init_zeta_from_netcdf on level 0 Loading initial sea surface height from NetCDF file bio_toy_ini_fennel_classic64.nc Sea surface height loaded from netcdf file Calling init_data_from_netcdf Loading initial solution data from NetCDF file bio_toy_ini_fennel_classic64.nc Initial data loaded from netcdf file Loading initial biology data from NetCDF file bio_toy_ini_fennel_classic64.nc Writing plotfile BioToy-restart_plt00000 Coarse STEP 1 starts ... Reading in Uwind at time index 1 from bio_toy_frc_classic64.nc Reading in Uwind at time index 0 from bio_toy_frc_classic64.nc Reading in Vwind at time index 1 from bio_toy_frc_classic64.nc Reading in Vwind at time index 0 from bio_toy_frc_classic64.nc Reading in Tair at time index 1 from bio_toy_frc_classic64.nc Reading in Tair at time index 0 from bio_toy_frc_classic64.nc Reading in qair at time index 1 from bio_toy_frc_classic64.nc Reading in qair at time index 0 from bio_toy_frc_classic64.nc Reading in Pair at time index 1 from bio_toy_frc_classic64.nc Reading in Pair at time index 0 from bio_toy_frc_classic64.nc Reading in swrad at time index 1 from bio_toy_frc_classic64.nc Reading in swrad at time index 0 from bio_toy_frc_classic64.nc Reading in rain at time index 1 from bio_toy_frc_classic64.nc Reading in rain at time index 0 from bio_toy_frc_classic64.nc Coarse STEP 1 ends. TIME = 540 DT = 540 Coarse STEP 2 starts ... Coarse STEP 2 ends. TIME = 1080 DT = 540 Coarse STEP 3 starts ... Coarse STEP 3 ends. TIME = 1620 DT = 540 Coarse STEP 4 starts ... Coarse STEP 4 ends. TIME = 2160 DT = 540 Coarse STEP 5 starts ... Coarse STEP 5 ends. TIME = 2700 DT = 540 Coarse STEP 6 starts ... Coarse STEP 6 ends. TIME = 3240 DT = 540 Coarse STEP 7 starts ... Coarse STEP 7 ends. TIME = 3780 DT = 540 Coarse STEP 8 starts ... Coarse STEP 8 ends. TIME = 4320 DT = 540 Coarse STEP 9 starts ... Coarse STEP 9 ends. TIME = 4860 DT = 540 Coarse STEP 10 starts ... Coarse STEP 10 ends. TIME = 5400 DT = 540 Writing plotfile BioToy-restart_plt00010 Unused ParmParse Variables: [TOP]::amr.check_int(nvals = 1) :: [5] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [1] [TOP]::remora.prob_name(nvals = 1) :: [BioToy] Total GPU global memory (MB) spread across MPI: [7965 ... 7965] Free GPU global memory (MB) spread across MPI: [3307 ... 5355] [The Arena] max space (MB) allocated spread across MPI: [1024 ... 1024] [The Arena] max space (MB) used spread across MPI: [10 ... 10] [The Managed Arena] max space (MB) allocated spread across MPI: [8 ... 8] [The Managed Arena] max space (MB) used spread across MPI: [0 ... 0] [The Pinned Arena] max space (MB) allocated spread across MPI: [8 ... 8] [The Pinned Arena] max space (MB) used spread across MPI: [1 ... 1] AMReX (26.08-28-g19e6fba747b6) finalized Initializing AMReX (26.08-28-g19e6fba747b6)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 Initializing CUDA... CUDA initialized with 1 device. AMReX (26.08-28-g19e6fba747b6) initialized REMORA git hash: v1.6-234-g5064316 AMReX git hash: 26.08-28-g19e6fba747 [REMORA] Active E-P source: bulk evap-rain diagnostic. Making level 0 from scratch GRIDS AT LEVEL 0 ARE (BoxArray maxbox(4) m_ref->m_hash_sig(0) ((0,0,0) (1,1,29) (0,0,0)) ((2,0,0) (3,1,29) (0,0,0)) ((0,2,0) (1,3,29) (0,0,0)) ((2,2,0) (3,3,29) (0,0,0)) ) Calling init_masks_from_netcdf level 0 Loading masks from NetCDF file bio_toy_grd_classic64.nc Masks loaded from netcdf file Loading Uwind from NetCDF file(s) Loading Vwind from NetCDF file(s) Loading Tair from NetCDF file(s) Loading qair from NetCDF file(s) Loading Pair from NetCDF file(s) Loading swrad from NetCDF file(s) Loading rain from NetCDF file(s) Calling init_bathymetry_from_netcdf Loading initial bathymetry from NetCDF file bio_toy_grd_classic64.nc Bathymetry loaded from netcdf file Calling init_grid_vars_from_netcdf Loading grid variables from NetCDF file bio_toy_grd_classic64.nc Loading spherical psi coordinates from NetCDF file bio_toy_grd_classic64.nc Grid variables loaded from netcdf file Loading grid variables from NetCDF file bio_toy_grd_classic64.nc Loading spherical psi coordinates from NetCDF file bio_toy_grd_classic64.nc Calling init_zeta_from_netcdf on level 0 Loading initial sea surface height from NetCDF file bio_toy_ini_fennel_classic64.nc Sea surface height loaded from netcdf file Calling init_data_from_netcdf Loading initial solution data from NetCDF file bio_toy_ini_fennel_classic64.nc Initial data loaded from netcdf file Loading initial biology data from NetCDF file bio_toy_ini_fennel_classic64.nc Writing plotfile BioToy-restart_plt00000 Coarse STEP 1 starts ... Reading in Uwind at time index 1 from bio_toy_frc_classic64.nc Reading in Uwind at time index 0 from bio_toy_frc_classic64.nc Reading in Vwind at time index 1 from bio_toy_frc_classic64.nc Reading in Vwind at time index 0 from bio_toy_frc_classic64.nc Reading in Tair at time index 1 from bio_toy_frc_classic64.nc Reading in Tair at time index 0 from bio_toy_frc_classic64.nc Reading in qair at time index 1 from bio_toy_frc_classic64.nc Reading in qair at time index 0 from bio_toy_frc_classic64.nc Reading in Pair at time index 1 from bio_toy_frc_classic64.nc Reading in Pair at time index 0 from bio_toy_frc_classic64.nc Reading in swrad at time index 1 from bio_toy_frc_classic64.nc Reading in swrad at time index 0 from bio_toy_frc_classic64.nc Reading in rain at time index 1 from bio_toy_frc_classic64.nc Reading in rain at time index 0 from bio_toy_frc_classic64.nc Coarse STEP 1 ends. TIME = 540 DT = 540 Coarse STEP 2 starts ... Coarse STEP 2 ends. TIME = 1080 DT = 540 Coarse STEP 3 starts ... Coarse STEP 3 ends. TIME = 1620 DT = 540 Coarse STEP 4 starts ... Coarse STEP 4 ends. TIME = 2160 DT = 540 Coarse STEP 5 starts ... Coarse STEP 5 ends. TIME = 2700 DT = 540 Coarse STEP 6 starts ... Coarse STEP 6 ends. TIME = 3240 DT = 540 Coarse STEP 7 starts ... Coarse STEP 7 ends. TIME = 3780 DT = 540 Coarse STEP 8 starts ... Coarse STEP 8 ends. TIME = 4320 DT = 540 Coarse STEP 9 starts ... Coarse STEP 9 ends. TIME = 4860 DT = 540 Coarse STEP 10 starts ... Coarse STEP 10 ends. TIME = 5400 DT = 540 Writing plotfile BioToy-restart_plt00010 Unused ParmParse Variables: [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.restart(nvals = 1) :: [BioToy-restart_chk00005] [TOP]::remora.prob_name(nvals = 1) :: [BioToy] Total GPU global memory (MB) spread across MPI: [7965 ... 7965] Free GPU global memory (MB) spread across MPI: [3307 ... 6379] [The Arena] max space (MB) allocated spread across MPI: [1024 ... 1024] [The Arena] max space (MB) used spread across MPI: [10 ... 10] [The Managed Arena] max space (MB) allocated spread across MPI: [8 ... 8] [The Managed Arena] max space (MB) used spread across MPI: [0 ... 0] [The Pinned Arena] max space (MB) allocated spread across MPI: [8 ... 8] [The Pinned Arena] max space (MB) used spread across MPI: [1 ... 1] AMReX (26.08-28-g19e6fba747b6) finalized