===============================================================================
 REMORA Job Information
===============================================================================
inputs file: inputs_fennel

number of MPI processes: 4

CPU time used since start of simulation (CPU-hours): 0.0127694

===============================================================================
 Plotfile Information
===============================================================================
output data / time: Mon Aug 31 23:00:26 2026
output dir:         /scratch/regtester/RegTesting/rt-REMORA/REMORA-GPU-tests/2026-08-31-001/Upwelling-Fennel-restart


===============================================================================
 Build Information
===============================================================================
build date:    2026-08-31 22:55:28.331540
build machine: Linux garuda 6.14.0-24-generic #24~24.04.3-Ubuntu SMP PREEMPT_DYNAMIC Mon Jul  7 16:39:17 UTC 2 x86_64 x86_64 x86_64 GNU/Linux
build dir:     /home/regtester/git/REMORA/Exec
AMReX dir:     /home/regtester/git/amrex/

COMP:          g++
COMP version:  12.6


REMORA       git hash: v1.7-2-g3a74e11
AMReX       git hash: 26.08-36-gf2cbba4afc


===============================================================================
 Grid Information
===============================================================================
 level: 0
   number of boxes = 6
   maximum zones   = 41 80 16 

 Boundary conditions
   -x: Periodic
   +x: Periodic
   -y: SlipWall
   +y: SlipWall
   -z: SlipWall
   +z: SlipWall


===============================================================================
 Inputs File Parameters
===============================================================================
DistributionMapping.verbose = 0
amr.blocking_factor = 1
amr.check_input = true
amr.checkpoint_files_output(nvals = 1)  :: [0]
amr.do_substep = 0
amr.grid_eff = 0.69999999999999996
amr.max_grid_iterations = 4
amr.max_grid_size = 2048
amr.max_level = 0
amr.n_cell = 41 80 16
amr.n_error_buf = 0
amr.n_proper = 2
amr.refine_grid_layout = true
amr.refine_grid_layout_x = 1
amr.refine_grid_layout_y = 1
amr.refine_grid_layout_z = 0
amr.regrid_int = 2
amr.restart(nvals = 1)  :: [Upwelling-Fennel-restart_chk00005]
amr.v = 1
amrex.abort_on_out_of_gpu_memory = false
amrex.abort_on_unused_inputs = false
amrex.async_out = false
amrex.async_out_nfiles = 64
amrex.fpe_trap_invalid = 1
amrex.fpe_trap_overflow = false
amrex.fpe_trap_zero = false
amrex.handle_sigabrt = true
amrex.handle_sigfpe = true
amrex.handle_sigill = true
amrex.handle_sigint = true
amrex.handle_sigsegv = true
amrex.handle_sigterm = false
amrex.init_snan = true
amrex.max_gpu_streams = 4
amrex.mf.alloc_single_chunk = false
amrex.signal_handling = true
amrex.the_arena_defragmentation = true
amrex.the_arena_init_size = 0
amrex.the_arena_init_size = 1073741824
amrex.the_arena_is_managed = false
amrex.the_arena_release_threshold = 9223372036854775807
amrex.the_comms_arena_defragmentation = true
amrex.the_comms_arena_init_size = 8388608
amrex.the_comms_arena_release_threshold = 9223372036854775807
amrex.the_device_arena_defragmentation = true
amrex.the_device_arena_init_size = 8388608
amrex.the_device_arena_release_threshold = 9223372036854775807
amrex.the_managed_arena_defragmentation = true
amrex.the_managed_arena_init_size = 8388608
amrex.the_managed_arena_release_threshold = 9223372036854775807
amrex.the_pinned_arena_defragmentation = true
amrex.the_pinned_arena_init_size = 8388608
amrex.the_pinned_arena_release_threshold = 1044004864
amrex.throw_exception = false
amrex.use_gpu_aware_mpi = false
amrex.vector_growth_factor = 1.5
amrex.verbose = 1
device.verbose = 0
fabarray.comm_tile_size = 1024000 1024000 1024000
fabarray.mfiter_tile_size = 8 8 1024000
geometry.coord_sys = 0
geometry.is_periodic = 1 0 0
geometry.prob_hi = 41000.0 80000.0 0.0
geometry.prob_lo = 0.0 0.0 -150.0
max_step = 2147483647
remora.Akk_bak = 5.0000000000000004e-06
remora.Akp_bak = 5.0000000000000004e-06
remora.Akt_bak = 9.9999999999999995e-07
remora.Akt_bak_salt = 9.9999999999999995e-07
remora.Akt_bak_temp = 9.9999999999999995e-07
remora.Akv_bak = 5.0000000000000004e-06
remora.Cdb_max = 0.5
remora.Cdb_min = 9.9999999999999995e-07
remora.EminusP = 0.0
remora.R0 = 1027.0
remora.S0 = 35.0
remora.Scoef = 0.0
remora.T0 = 14.0
remora.Tcoef = 1.7e-4
remora.Zob = 0.02
remora.Zos = 0.02
remora.air_humidity = 0.77600000000000002
remora.air_pressure = 1013.48
remora.air_temperature = 23.567
remora.atm2ocn_flux_mode = false
remora.bc.xhi.type = "null"
remora.bc.xlo.type = "null"
remora.bc.yhi.type = "SlipWall"
remora.bc.ylo.type = "SlipWall"
remora.bc.zhi.type = "slipwall"
remora.bc.zlo.type = "slipwall"
remora.biology_debug = 0
remora.biology_debug_i = 2
remora.biology_debug_j = 2
remora.biology_ic_type = analytic
remora.biology_model = fennel
remora.blk_ZQ = 10.0
remora.blk_ZT = 10.0
remora.blk_ZW = 10.0
remora.bottom_stress_type = "linear"
remora.boundary_per_variable = false
remora.bulk_fluxes = true
remora.cfl = 0.80000000000000004
remora.change_max = 1.1000000000000001
remora.check_file = chk
remora.check_file = Upwelling-Fennel-restart_chk
remora.check_int = -57600
remora.check_int_time = -1.0
remora.cloud = 0.0
remora.cloud_type = "constant"
remora.coriolis_beta = 0.0
remora.coriolis_f0 = -8.26e-5
remora.coriolis_type = beta_plane
remora.coupling_type = "TwoWay"
remora.do_LdetritusC_clim_nudg = false
remora.do_LdetritusN_clim_nudg = false
remora.do_NH4_clim_nudg = false
remora.do_NO3_clim_nudg = false
remora.do_RdetritusC_clim_nudg = false
remora.do_RdetritusN_clim_nudg = false
remora.do_SdetritusC_clim_nudg = false
remora.do_SdetritusN_clim_nudg = false
remora.do_TIC_clim_nudg = false
remora.do_alkalinity_clim_nudg = false
remora.do_chlorophyll_clim_nudg = false
remora.do_m2_clim_nudg = false
remora.do_m3_clim_nudg = false
remora.do_oxygen_clim_nudg = false
remora.do_phytoplankton_clim_nudg = false
remora.do_rivers = false
remora.do_rivers_LdetritusC = false
remora.do_rivers_LdetritusN = false
remora.do_rivers_NH4 = false
remora.do_rivers_NO3 = false
remora.do_rivers_RdetritusC = false
remora.do_rivers_RdetritusN = false
remora.do_rivers_SdetritusC = false
remora.do_rivers_SdetritusN = false
remora.do_rivers_TIC = false
remora.do_rivers_alkalinity = false
remora.do_rivers_chlorophyll = false
remora.do_rivers_oxygen = false
remora.do_rivers_phytoplankton = false
remora.do_rivers_salt = true
remora.do_rivers_scalar = false
remora.do_rivers_temp = true
remora.do_rivers_tracer = false
remora.do_rivers_zooplankton = false
remora.do_salt_clim_nudg = false
remora.do_temp_clim_nudg = false
remora.do_tracer_clim_nudg = false
remora.do_zooplankton_clim_nudg = false
remora.eminusp = false
remora.eminusp_correct_ssh = false
remora.eminusp_type = "computed"
remora.eos_type = "linear"
remora.expand_plotvars_to_unif_rr = false
remora.fennel.AttChl = 0.02486
remora.fennel.AttSW = 0.040000000000000001
remora.fennel.BioIter = 1
remora.fennel.Chl2C_m = 0.053499999999999999
remora.fennel.ChlMin = 0.01
remora.fennel.CoagR = 0.0050000000000000001
remora.fennel.D_p5NH4 = 0.10000000000000001
remora.fennel.I_thNH4 = 0.0094999999999999998
remora.fennel.K_NH4 = 2.0
remora.fennel.K_NO3 = 2.0
remora.fennel.K_PO4 = 32.0
remora.fennel.K_Phy = 1.0
remora.fennel.LDeRRC = 0.01
remora.fennel.LDeRRN = 0.01
remora.fennel.NitriR = 0.050000000000000003
remora.fennel.PARfrac = 0.42999999999999999
remora.fennel.PhyCN = 6.625
remora.fennel.PhyIP = 1.5
remora.fennel.PhyIS = 0.025000000000000001
remora.fennel.PhyMR = 0.14999999999999999
remora.fennel.PhyMin = 0.01
remora.fennel.RDeRRC = 0.03
remora.fennel.RDeRRN = 0.03
remora.fennel.R_P2N = 0.0625
remora.fennel.SDeRRC = 0.029999999999999999
remora.fennel.SDeRRN = 0.10000000000000001
remora.fennel.Vp0 = 1.0
remora.fennel.ZooAE_N = 0.75
remora.fennel.ZooBM = 0.10000000000000001
remora.fennel.ZooCN = 6.625
remora.fennel.ZooER = 0.10000000000000001
remora.fennel.ZooGR = 0.59999999999999998
remora.fennel.ZooMR = 0.025000000000000001
remora.fennel.ZooMin = 0.01
remora.fennel.bio_sediment = true
remora.fennel.carbon = true
remora.fennel.co2_schmidt = rw14
remora.fennel.denitrification = false
remora.fennel.odu = false
remora.fennel.oxygen = true
remora.fennel.oxygen_schmidt = rw14
remora.fennel.pCO2air = 370.0
remora.fennel.pco2air_type = secular
remora.fennel.po4 = false
remora.fennel.river_don = true
remora.fennel.talk_nonconserv = true
remora.fennel.wLDet = 1.0
remora.fennel.wPhy = 0.10000000000000001
remora.fennel.wSDet = 0.10000000000000001
remora.file_min_digits = 5
remora.fixed_dt = 300.0
remora.gls_stability_type = "Canuto_A"
remora.grid_scale_type = "constant"
remora.harmonic_mixing_type = "s"
remora.hires_grid_level = -1
remora.hires_init_level = -1
remora.horizontal_mixing_type = "analytic"
remora.ic_bc_type = "analytic"
remora.ic_type = "analytic"
remora.init_ana_T = false
remora.init_l0int_T = true
remora.init_l1ad_T = false
remora.is_periodic = 1 0 0
remora.longwave_down = false
remora.longwave_is_net = false
remora.longwave_netcdf_varname = "lwrad"
remora.longwave_radiation_flux = 0.0
remora.lwrad_type = "computed"
remora.m2nudg = 0.0
remora.m3nudg = 0.0
remora.mask_type = "none"
remora.max_step = 10
remora.max_step = 10
remora.n_cell = 41 80 16
remora.ndtfast = 30
remora.nscalar = 1
remora.obcfac = 0.0
remora.output_forcing = false
remora.pair_type = "constant"
remora.plot_file = plt
remora.plot_file = Upwelling-Fennel-restart_plt
remora.plot_int = 100
remora.plot_int_time = -1.0
remora.plot_vars_3d = salt temp tracer x_velocity y_velocity z_velocity fennel
remora.plotfile_type = amrex
remora.prob_hi = 41000. 80000. 0.
remora.prob_lo = 0. 0. -150.
remora.prob_name = Upwelling
remora.qair_is_percent = false
remora.qair_type = "constant"
remora.rain = 0.0
remora.rain_type = "constant"
remora.rdrag = 0.00029999999999999997
remora.rdrag2 = 0.0030000000000000001
remora.rho0 = 1025.0
remora.scaled_to_grid_amr_scaling = "none"
remora.smflux_type = "analytic"
remora.start_time = 0.0
remora.stop_time = 1.7976931348623157e+308
remora.sum_interval = 1
remora.sum_period = -1.0
remora.surface_radiation_flux = 300.0
remora.swrad_type = "constant"
remora.tair_type = "constant"
remora.tcline = 25.0
remora.theta_b = 0.0
remora.theta_s = 3.0
remora.time_ref = 20200301.0
remora.tnu2_LdetritusC = 0.0
remora.tnu2_LdetritusN = 0.0
remora.tnu2_NH4 = 0.0
remora.tnu2_NO3 = 0.0
remora.tnu2_RdetritusC = 0.0
remora.tnu2_RdetritusN = 0.0
remora.tnu2_SdetritusC = 0.0
remora.tnu2_SdetritusN = 0.0
remora.tnu2_TIC = 0.0
remora.tnu2_alkalinity = 0.0
remora.tnu2_chlorophyll = 0.0
remora.tnu2_oxygen = 0.0
remora.tnu2_phytoplankton = 0.0
remora.tnu2_salt = 0.0
remora.tnu2_scalar = 0.0
remora.tnu2_temp = 0.0
remora.tnu2_tracer = 0.0
remora.tnu2_zooplankton = 0.0
remora.tnudg = 0.0
remora.tracer_horizontal_advection_scheme = "upstream3"
remora.use_biology_cpp_answer = 1
remora.use_coriolis = true
remora.use_curvilinear_grid = false
remora.use_hydro_particles = false
remora.use_prestep = true
remora.use_salt = true
remora.use_tracer_particles = false
remora.use_uv3dmix = true
remora.uv_horizontal_advection_scheme = "upstream3"
remora.uwind = 5.0
remora.uwind_type = "analytic"
remora.v = 0
remora.vertical_mixing_type = "analytic"
remora.visc2 = 0.0
remora.vwind = 0.0
remora.vwind_type = "analytic"
remora.wind_type = "analytic"
remora.znudg = 0.0
stop_time = 1.7976931348623157e+308