Initializing AMReX (26.04-101-g59e9ebe6c1f3)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 AMReX (26.04-101-g59e9ebe6c1f3) initialized Successfully read inputs file ... ERF git hash: af032f0e AMReX git hash: 26.04-101-g59e9ebe6c1 Problem name (from inputs file) is WPS Reading NC init file names at level 0 and index 0 : wrfinput_chisholmview_d01 Reading NC bdy file name wrfbdy_chisholmview_d01_width1 Coriolis frequency, f = 0.000145842318 1/s Thermal stratification based on gradient of potential temperature Have read start_time string at level 0 is 2013-11-21_06:00:00 Have read start_time number at level 0 is 1385013600 Null land surface model! SOLVER CHOICE: At level 0 : compressible with implicit substepping vert_implicit_fac : 0 0 0 use_coriolis : 1 use_gravity : 1 Moisture Model: Kessler Terrain Type: StaticFittedMesh Buildings Type: None Mesh Type: VariableDz ABL Driver Type: Geostrophic Wind (-0,0.00218763477,-1.339539959e-19) Radiation Model: None Gradp_type : 0 Buoyancy_type at level 0 : 2 Advection Choices: dycore_horiz_adv_type : Upwind_3rd dycore_vert_adv_type : Upwind_3rd dryscal_horiz_adv_type : Upwind_3rd dryscal_vert_adv_type : Upwind_3rd moistscal_horiz_adv_type : WENO3 moistscal_vert_adv_type : WENO3 Diffusion choices: rho0_trans : 1 alpha_T : 0 alpha_C : 0 dynamic_viscosity : 0 Not using any molecular diffusivity, i.e. using the modeled turbulent diffusivity Sponge choices: Rayleigh damping : None w damping : 0 (coeff = -1 * dz/dt**2) Turbulence Settings at level 0 Using Smagorinsky LES model at level 0 Smagorinsky uses Richardson number correction with Ri_crit = 0.25 Cs : 0.005 isotropic mixing : 1 Pr_t : 0.3333333333 Sc_t : 1 Creating new distribution map on level: 0 BA FROM SCRATCH AT LEVEL 0 (BoxArray maxbox(4) m_ref->m_hash_sig(0) ((0,0,0) (99,99,175) (0,0,0)) ((100,0,0) (199,99,175) (0,0,0)) ((0,100,0) (99,199,175) (0,0,0)) ((100,100,0) (199,199,175) (0,0,0)) ) Loading initial data from NetCDF file at level 0 Reading from file wrfinput_chisholmview_d01 Will read density from ALB + AL variables Have read (nx,ny,nz) = 200 200 176 Have read (parent_ilo,parent_jlo) = 0 0 Have read refinement ratio = 1 Box in file ((0,0,0) (199,199,175) (0,0,0)) Box to fill ((0,0,0) (199,199,175) (0,0,0)) Checking for ALB ... Reading ALB Checking for AL ... Reading AL Checking for U ... Reading U Checking for V ... Reading V Checking for W ... Reading W Checking for THM ... Reading THM Checking for PH ... Reading PH Checking for PHB ... Reading PHB Checking for PB ... Reading PB Checking for P ... Reading P Checking for PSFC ... Reading PSFC Checking for MUB ... Reading MUB Checking for MAPFAC_U ... Reading MAPFAC_U Checking for MAPFAC_V ... Reading MAPFAC_V Checking for MAPFAC_M ... Reading MAPFAC_M Checking for SST ... Reading SST Checking for TSK ... Reading TSK Checking for LANDMASK ... Reading LANDMASK Checking for C1H ... Reading C1H Checking for C2H ... Reading C2H Checking for XLAT_V ... Reading XLAT_V Checking for XLONG_U ... Reading XLONG_U Checking for QVAPOR ... Reading QVAPOR Checking for QCLOUD ... Reading QCLOUD Checking for QRAIN ... Reading QRAIN Checking for IVGTYP ... Reading IVGTYP Checking for ISLTYP ... Reading ISLTYP Terrain has min value = -50.12749566 and max value = 3509.155697 Top of mesh has min value = 15684.13091 and max value = 16560.73164 Max of second-to-highest row = 16382.9893 which is greater than average of top row so defaulting to alternate approach Warning: ProbHi(2) will be ignored; we are setting top of domain to 16471.86047 Verifying grid integrity Loading boundary data from NetCDF file Reading Times wrfbdy datetime 0 : 2013-11-21_06:00:00 1385013600 wrfbdy datetime 1 : 2013-11-21_09:00:00 1385024400 wrfbdy datetime 2 : 2013-11-21_12:00:00 1385035200 wrfbdy datetime 3 : 2013-11-21_15:00:00 1385046000 wrfbdy datetime 4 : 2013-11-21_18:00:00 1385056800 wrfbdy datetime 5 : 2013-11-21_21:00:00 1385067600 wrfbdy datetime 6 : 2013-11-22_00:00:00 1385078400 wrfbdy datetime 7 : 2013-11-22_03:00:00 1385089200 Reading time slice 0 from wrfbdy_chisholmview_d01_width1 Read in boundary data with width 1 Running with relaxation width: 1 Reading time slice 1 from wrfbdy_chisholmview_d01_width1 Reading time slice 2 from wrfbdy_chisholmview_d01_width1 start_bdy_time is 1385013600 from wrfbdy but note that time variable in simulation is elapsed time Based on cfl of one Compressible dt at level 0 would be: 52.06233526 Anelastic dt at level 0 would be: 345.9945654 Fixed dt at level 0 is: 0.5 smallest even ratio is: 4 If there is water, Charnock relation with C_a=0.0185 will be used Variable sea roughness (type charnock) Using MOST with specified surface temperature (land: TSK, sea: SST) Writing native 3D plotfile WPS_Test_Terrain_plt00000 3DPlotfile write time = 0.854083951 seconds. TIME= 0 MASS = 1.187149998e+17 RHO THETA = 3.75671301e+19 RHO SCALAR = 0 RHO QTOTAL = 2.540126461e+14 2013-11-21 06:00:00.000000 (0 s elapsed) Coarse STEP 1 starts ... Based on cfl of one Compressible dt at level 0 would be: 52.06233526 Anelastic dt at level 0 would be: 345.9945654 Fixed dt at level 0 is: 0.5 smallest even ratio is: 4 [Level 0 step 1] ADVANCE from elapsed time = 0 to 0.5 with dt = 0.5 Making slow rhs at time 0 for fast variables advancing from 0 to 0.1666666666667 Fast time integration at level 0 from 0 to 0.1666666666667 with dt = 0.1666666666667 Time integration of scalars at level 0 from 0 to 0.1666666666667 with dt = 0.1666666666667 using RHS created at 0 Making slow rhs at time 0.1666666666667 for fast variables advancing from 0 to 0.25 Fast time integration at level 0 from 0 to 0.25 with dt = 0.25 Time integration of scalars at level 0 from 0 to 0.25 with dt = 0.25 using RHS created at 0.1666666666667 Making slow rhs at time 0.25 for fast variables advancing from 0 to 0.5 Fast time integration at level 0 from 0 to 0.25 with dt = 0.25 Fast time integration at level 0 from 0.25 to 0.5 with dt = 0.25 Time integration of scalars at level 0 from 0 to 0.5 with dt = 0.5 using RHS created at 0.25 Done with advance_dycore at level 0 [Level 0 step 1] Advanced 7040000 cells Cloud fraction 0 0.1971 Coarse STEP 1 ends. TIME = 0.5 DT = 0.5 Timestep time = 11.56055583 seconds. TIME= 0.5 MASS = 1.187150044e+17 RHO THETA = 3.75671402e+19 RHO SCALAR = 0 RHO QTOTAL = 2.540123026e+14 Writing native 3D plotfile WPS_Test_Terrain_plt00001 3DPlotfile write time = 0.636886887 seconds. Total Time: 23.28370462 Unused ParmParse Variables: [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::erf.real_set_width(nvals = 1) :: [1] AMReX (26.04-101-g59e9ebe6c1f3) finalized