Initializing AMReX (26.10-74-g47ceffc47cea)...
MPI initialized with 4 MPI processes
MPI initialized with thread support level 0
OMP initialized with 1 OMP threads
AMReX (26.10-74-g47ceffc47cea) initialized
   MFIX git describe: 26.10-21-gb00fa2e2f18e
AMReX-Hydro git hash: a153304acd787205b170b0f7fd8284627e076056
Number of levels: 1
RunType is Standard
Auto-generating level-set parameters:
  eb_refinement = 1
  levelset_pad  = 2
  eb_pad        = 2

================================================================================
Warning: Overwriting amr.check_file with value from mfix.check_file
================================================================================


================================================================================
Warning: Overwriting amr.plt_regtest with value from mfix.plt_regtest
================================================================================


================================================================================
Warning: Overwriting amr.plot_int with value from output.plot.int
================================================================================


================================================================================
Warning: Overwriting amr.plot_file with value from output.plot.file
================================================================================

Simulation is transient

--------------------------------------------------------------------------------
Info: Max effective viscosity factor not specified.
Using default 1e+06
--------------------------------------------------------------------------------

Particle-particle conduction is disabled.
Particle-fluid-particle conduction is disabled.

Load balance setup:
   Type:      DualGrid
   Strategy:  KnapSack
   Weighting: ParticleCount

Drag model: BVK2
Convection model not specified. Setting default:
  mfix.convection.model = RanzMarshall

 Building cylinder geometry.
 
 Internal Flow: 1
 Radius:    0.0039
 Height:    -1
 Direction: 0
 Rotation angle: 0
 Rotation axis: 0
 Center:    0.004, 0.004, 0.004
Done making the fluid eb levels ...

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

================================================================================
Warning: Setting particle max grid size to fluid max grid size
================================================================================

In MakeBaseGrids: BA HAS 16 GRIDS
Auto generating particles ...
Total number of generated particles: 215,120
Time spent in initializing particles 0.809495007


****************************************
  Coverage report:  Grids        Cells
          regular:      4        44960
          covered:      0        12800
              cut:     12         6240
****************************************

Bounding box for levelset imposed walls:
   Lo: 1e-15  -0.008  -0.008
   Hi: 0.016  0.016  0.016
Clean up auto-generated particles.

  IC Region                Generated           Removed         Remaining
  ****************  ****************  ****************  ****************
  full-domain                      0                 0                 0
  bed                        215,120            58,061           157,059
  ----------------  ----------------  ----------------  ----------------
  Total                      215,120            58,061           157,059
  ****************  ****************  ****************  ****************
Setting original sum_vol to 2.998926818e-07
Initial projection:
Before projection:
   max(abs(u/v/w))  = 0.015  0  0
   max(abs(gpx/gpy/gpz))  = 0  0  0
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 44.6112468

MLMG: Initial rhs               = 22.3056234
MLMG: Initial residual (resid0) = 22.3056234
MLMG: Final Iter. 12 resid, resid/bnorm = 1.477254985e-10, 6.622791744e-12
MLMG: Timers: Solve = 0.15081578 Iter = 0.11575112 Bottom = 0.003551117
After  projection:
   max(abs(u/v/w))  = 0.02199251829  0.001131161342  0.001189525564
Doing initial pressure iterations with dt = 0.0002

In initial_iterations: iter = 0
Before projection:
   max(abs(u/v/w))  = 0.014211585  0.004882459188  0.004977002287
   max(abs(gpx/gpy/gpz))  = 0  0  0
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 148.002174

MLMG: Initial rhs               = 74.00108702
MLMG: Initial residual (resid0) = 74.00108702
MLMG: Final Iter. 12 resid, resid/bnorm = 6.676403874e-10, 9.022034868e-12
MLMG: Timers: Solve = 0.149920863 Iter = 0.116341244 Bottom = 0.003733489
After  projection:
   max(abs(u/v/w))  = 0.02182750948  0.003257541671  0.00341417942

In initial_iterations: iter = 1
Before projection:
   max(abs(u/v/w))  = 0.0171546002  0.004848895969  0.004937791092
   max(abs(gpx/gpy/gpz))  = 7.863893069  1.409047578  1.423944432
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 147.5196537

MLMG: Initial rhs               = 73.75982686
MLMG: Initial residual (resid0) = 73.75982686
MLMG: Final Iter. 12 resid, resid/bnorm = 5.144104032e-10, 6.974127043e-12
MLMG: Timers: Solve = 0.148447541 Iter = 0.115245067 Bottom = 0.003326046
After  projection:
   max(abs(u/v/w))  = 0.02177110344  0.003233518523  0.003393322353

In initial_iterations: iter = 2
Before projection:
   max(abs(u/v/w))  = 0.0177426968  0.00481581808  0.004898945493
   max(abs(gpx/gpy/gpz))  = 15.69526012  2.807721902  2.836717293
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 147.038584

MLMG: Initial rhs               = 73.519292
MLMG: Initial residual (resid0) = 73.519292
MLMG: Final Iter. 12 resid, resid/bnorm = 2.541888644e-10, 3.4574444e-12
MLMG: Timers: Solve = 0.148404895 Iter = 0.115020282 Bottom = 0.003467819
After  projection:
   max(abs(u/v/w))  = 0.02178343022  0.00320998773  0.00337294207
Enclosed domain volume is   2.998926818e-07
Time spent in init      4.04022076

  Writing plotfile BENCH05-Size0008_wide-Chemistry_plt00000 at time 0
Regridding at step 0
Updating particle ebfactory
Regridding level-set on lev = 0
Also regridding refined level-set

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 1: from old_time 0 to new time 1.807175125e-05 with dt = 1.807175125e-05

Before projection (with small dt modification):
   max(abs(u/v/w))  = 0.01505648444  0.005329910363  0.005403699662
   max(abs(gpx/gpy/gpz))  = 23.46624449  4.196155297  4.238468346
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 182.2931522

MLMG: Initial rhs               = 91.14657612
MLMG: Initial residual (resid0) = 91.14657612
MLMG: Final Iter. 12 resid, resid/bnorm = 7.248834866e-10, 7.952942584e-12
MLMG: Timers: Solve = 0.14919987 Iter = 0.115578468 Bottom = 0.003314461
After  projection (with small dt modification):
   max(abs(u/v/w))  = 0.02278377928  0.003461130333  0.003571149442
Evolving particles on level: 0 ... with fluid dt 1.807175125e-05
done. 
   Time per fluid step      0.842901103
   Time per 38 particle steps 0.655147941
   Coupling time per step   0.074621307
   Time per chemistry step  0.028856175
   Time per step        1.65769305
Regridding at step 1

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 2: from old_time 1.807175125e-05 to new time 3.604330969e-05 with dt = 1.797155844e-05

Before projection:
   max(abs(u/v/w))  = 0.02683197833  0.008176814279  0.008205723778
   max(abs(gpx/gpy/gpz))  = 107.9786094  16.82539024  16.88966325
Min and Max of epf 0.2712174507 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 318.5391155

MLMG: Initial rhs               = 159.2695577
MLMG: Initial residual (resid0) = 159.2695577
MLMG: Final Iter. 12 resid, resid/bnorm = 1.240382741e-09, 7.787946162e-12
MLMG: Timers: Solve = 0.149224938 Iter = 0.115707884 Bottom = 0.00353158
After  projection:
   max(abs(u/v/w))  = 0.02520309237  0.004360964199  0.004673968672
Evolving particles on level: 0 ... with fluid dt 1.797155844e-05
done. 
   Time per fluid step      0.861748332
   Time per 38 particle steps 0.650116272
   Coupling time per step   0.069464282
   Time per chemistry step  0.028316003
   Time per step        1.619675234
Regridding at step 2

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 3: from old_time 3.604330969e-05 to new time 5.391480952e-05 with dt = 1.787149982e-05

Before projection:
   max(abs(u/v/w))  = 0.047577514  0.009959406588  0.009923317863
   max(abs(gpx/gpy/gpz))  = 192.3264757  24.73779616  24.75242563
Min and Max of epf 0.2712339692 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 452.0701138

MLMG: Initial rhs               = 226.0350569
MLMG: Initial residual (resid0) = 226.0350569
MLMG: Final Iter. 12 resid, resid/bnorm = 1.410711603e-09, 6.241118623e-12
MLMG: Timers: Solve = 0.148657584 Iter = 0.115350466 Bottom = 0.003576606
After  projection:
   max(abs(u/v/w))  = 0.02761727253  0.004754436146  0.005169830342
Evolving particles on level: 0 ... with fluid dt 1.787149982e-05
done. 
   Time per fluid step      0.858392782
   Time per 37 particle steps 0.636045586
   Coupling time per step   0.069857339
   Time per chemistry step  0.028196664
   Time per step        1.602163938
Regridding at step 3

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 4: from old_time 5.391480952e-05 to new time 7.168446886e-05 with dt = 1.776965934e-05

Before projection:
   max(abs(u/v/w))  = 0.06767685734  0.0112003651  0.01106395262
   max(abs(gpx/gpy/gpz))  = 275.5914687  30.35199963  30.16238202
Min and Max of epf 0.2712610448 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 581.8119724

MLMG: Initial rhs               = 290.9059862
MLMG: Initial residual (resid0) = 290.9059862
MLMG: Final Iter. 12 resid, resid/bnorm = 1.060148969e-09, 3.644300973e-12
MLMG: Timers: Solve = 0.14898004 Iter = 0.115443487 Bottom = 0.003327836
After  projection:
   max(abs(u/v/w))  = 0.02998394916  0.004932315462  0.005390151975
Evolving particles on level: 0 ... with fluid dt 1.776965934e-05
done. 
   Time per fluid step      0.856529795
   Time per 37 particle steps 0.637034989
   Coupling time per step   0.069520617
   Time per chemistry step  0.028475261
   Time per step        1.601170143
Regridding at step 4

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 5: from old_time 7.168446886e-05 to new time 8.934981363e-05 with dt = 1.766534477e-05

Before projection:
   max(abs(u/v/w))  = 0.08721132193  0.01210817984  0.01185815599
   max(abs(gpx/gpy/gpz))  = 357.8644136  34.50829179  34.06072698
Min and Max of epf 0.2712983842 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 707.7223889

MLMG: Initial rhs               = 353.8611944
MLMG: Initial residual (resid0) = 353.8611944
MLMG: Final Iter. 12 resid, resid/bnorm = 1.115934678e-09, 3.153594391e-12
MLMG: Timers: Solve = 0.148355574 Iter = 0.114987478 Bottom = 0.003682435
After  projection:
   max(abs(u/v/w))  = 0.03229966596  0.00542112622  0.006050648303
Evolving particles on level: 0 ... with fluid dt 1.766534477e-05
done. 
   Time per fluid step      0.854806345
   Time per 37 particle steps 0.638656438
   Coupling time per step   0.068947635
   Time per chemistry step  0.028363962
   Time per step        1.600469409
Regridding at step 5

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 6: from old_time 8.934981363e-05 to new time 0.0001069100894 with dt = 1.756027573e-05

Before projection:
   max(abs(u/v/w))  = 0.1062119692  0.012804629  0.01244131263
   max(abs(gpx/gpy/gpz))  = 439.1464109  37.73144709  39.39367342
Min and Max of epf 0.2713456842 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 829.8057219

MLMG: Initial rhs               = 414.902861
MLMG: Initial residual (resid0) = 414.902861
MLMG: Final Iter. 12 resid, resid/bnorm = 1.417070905e-09, 3.415428136e-12
MLMG: Timers: Solve = 0.14849902 Iter = 0.115054923 Bottom = 0.003314997
After  projection:
   max(abs(u/v/w))  = 0.03456444953  0.005812253366  0.006537938618
Evolving particles on level: 0 ... with fluid dt 1.756027573e-05
done. 
   Time per fluid step      0.854813416
   Time per 37 particle steps 0.637750525
   Coupling time per step   0.069200988
   Time per chemistry step  0.028684844
   Time per step        1.599891819
Regridding at step 6

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 7: from old_time 0.0001069100894 to new time 0.0001243655039 with dt = 1.745541458e-05

Before projection:
   max(abs(u/v/w))  = 0.1247015721  0.01336594923  0.01289518241
   max(abs(gpx/gpy/gpz))  = 519.4209155  45.73815078  48.15298553
Min and Max of epf 0.2714026399 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 947.9092872

MLMG: Initial rhs               = 473.9546436
MLMG: Initial residual (resid0) = 473.9546436
MLMG: Final Iter. 12 resid, resid/bnorm = 2.842025282e-09, 5.996407715e-12
MLMG: Timers: Solve = 0.148193688 Iter = 0.114795719 Bottom = 0.003316811
After  projection:
   max(abs(u/v/w))  = 0.03677890423  0.006111997682  0.006913788523
Evolving particles on level: 0 ... with fluid dt 1.745541458e-05
done. 
   Time per fluid step      0.854902666
   Time per 36 particle steps 0.624647026
   Coupling time per step   0.068904766
   Time per chemistry step  0.02849043
   Time per step        1.586570686
Regridding at step 7

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 8: from old_time 0.0001243655039 to new time 0.0001417169227 with dt = 1.735141875e-05

Before projection:
   max(abs(u/v/w))  = 0.1426955987  0.01384080962  0.01326956329
   max(abs(gpx/gpy/gpz))  = 598.6668902  54.2878509  57.11421361
Min and Max of epf 0.2714689522 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1062.091607

MLMG: Initial rhs               = 531.0458035
MLMG: Initial residual (resid0) = 531.0458035
MLMG: Final Iter. 12 resid, resid/bnorm = 2.126846255e-09, 4.00501471e-12
MLMG: Timers: Solve = 0.148676156 Iter = 0.1152659 Bottom = 0.00332662
After  projection:
   max(abs(u/v/w))  = 0.03894398438  0.006346603766  0.007220170985
Evolving particles on level: 0 ... with fluid dt 1.735141875e-05
done. 
   Time per fluid step      0.854522117
   Time per 36 particle steps 0.623487897
   Coupling time per step   0.068613642
   Time per chemistry step  0.028747016
   Time per step        1.585559726
Regridding at step 8

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 9: from old_time 0.0001417169227 to new time 0.0001589656621 with dt = 1.724873944e-05

Before projection:
   max(abs(u/v/w))  = 0.1602084219  0.01426036682  0.01489108713
   max(abs(gpx/gpy/gpz))  = 676.8660339  63.01725842  66.23639732
Min and Max of epf 0.2715443201 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1172.445058

MLMG: Initial rhs               = 586.2225292
MLMG: Initial residual (resid0) = 586.2225292
MLMG: Final Iter. 12 resid, resid/bnorm = 2.434227042e-09, 4.15239422e-12
MLMG: Timers: Solve = 0.17023906 Iter = 0.115618896 Bottom = 0.003353331
After  projection:
   max(abs(u/v/w))  = 0.04106038607  0.006589722682  0.007482817991
Evolving particles on level: 0 ... with fluid dt 1.724873944e-05
done. 
   Time per fluid step      0.875640755
   Time per 36 particle steps 0.62472182
   Coupling time per step   0.069145878
   Time per chemistry step  0.028618516
   Time per step        1.608019171
Regridding at step 9

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 10: from old_time 0.0001589656621 to new time 0.0001761134581 with dt = 1.7147796e-05

Before projection:
   max(abs(u/v/w))  = 0.1772533555  0.01602370882  0.01708026345
   max(abs(gpx/gpy/gpz))  = 754.0015071  71.89928527  75.48343923
Min and Max of epf 0.2716284532 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1279.076636

MLMG: Initial rhs               = 639.5383178
MLMG: Initial residual (resid0) = 639.5383178
MLMG: Final Iter. 12 resid, resid/bnorm = 4.416423671e-09, 6.905643568e-12
MLMG: Timers: Solve = 0.148689097 Iter = 0.115021336 Bottom = 0.003335447
After  projection:
   max(abs(u/v/w))  = 0.04312888062  0.006913951038  0.007715913954
Evolving particles on level: 0 ... with fluid dt 1.7147796e-05
done. 
   Time per fluid step      0.856307492
   Time per 36 particle steps 0.623970858
   Coupling time per step   0.06890735
   Time per chemistry step  0.028468766
   Time per step        1.587326822

**************************************************************************************************************
  Species mass balance for interval:      0.000000  to     0.000176

  Species     mass(t+dt)      mass(t)     production      mass(in)     mass(out)      net accu       flux   
  CH4         2.1642e-09    2.1642e-09    0.0000e+00    8.9444e-13    9.0817e-13   -1.6544e-24   -1.3734e-14
  H2          4.3284e-09    4.3284e-09    0.0000e+00    1.7889e-12    1.8163e-12   -3.3087e-24   -2.7468e-14
  CO          2.1642e-09    2.1642e-09    0.0000e+00    8.9444e-13    9.0817e-13   -1.6544e-24   -1.3734e-14
  H2O         4.3284e-09    4.3284e-09    0.0000e+00    1.7889e-12    1.8163e-12   -3.3087e-24   -2.7468e-14
  CO2         2.1642e-09    2.1642e-09    0.0000e+00    8.9444e-13    9.0817e-13   -1.6544e-24   -1.3734e-14
  O2          2.1642e-09    2.1642e-09    0.0000e+00    8.9444e-13    9.0817e-13   -1.6544e-24   -1.3734e-14
  N2          4.3284e-09    4.3284e-09    0.0000e+00    1.7889e-12    1.8163e-12   -3.3087e-24   -2.7468e-14
  Fe2O3       4.9342e-05    4.9342e-05    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00
  FeO         4.9342e-05    4.9342e-05    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00
  inert       6.5789e-05    6.5789e-05    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00
--------------------------------------------------------------------------------------------------------------
  Total       1.6449e-04    1.6449e-04    0.0000e+00    8.9444e-12    9.0817e-12   -1.6544e-23   -1.3734e-13

  total number of particles =          157,059
  |(total acc) - (net flux)| =      1.3734e-13
**************************************************************************************************************

  Writing plotfile BENCH05-Size0008_wide-Chemistry_plt00010 at time 0.0001761134581
Time spent in main (after init) 16.0911218
Time spent in main      20.13134256

AMReX (26.10-74-g47ceffc47cea) finalized
