Initializing AMReX (26.10-109-g1aebac90c563)...
MPI initialized with 4 MPI processes
MPI initialized with thread support level 0
OMP initialized with 1 OMP threads
AMReX (26.10-109-g1aebac90c563) initialized
   MFIX git describe: 26.10-35-g8b22e2f054a2
AMReX-Hydro git hash: a153304acd787205b170b0f7fd8284627e076056
Number of levels: 1
RunType is Standard
Auto-generating level-set parameters:
  eb_refinement = 1
  levelset_pad  = 2
  eb_pad        = 2

================================================================================
Warning: Overwriting amr.check_file with value from mfix.check_file
================================================================================


================================================================================
Warning: Overwriting amr.plt_regtest with value from mfix.plt_regtest
================================================================================


================================================================================
Warning: Overwriting amr.plot_int with value from output.plot.int
================================================================================


================================================================================
Warning: Overwriting amr.plot_file with value from output.plot.file
================================================================================

Simulation is transient

--------------------------------------------------------------------------------
Info: Max effective viscosity factor not specified.
Using default 1e+06
--------------------------------------------------------------------------------

Particle-particle conduction is disabled.
Particle-fluid-particle conduction is disabled.

Load balance setup:
   Type:      DualGrid
   Strategy:  KnapSack
   Weighting: ParticleCount

Drag model: BVK2
Convection model not specified. Setting default:
  mfix.convection.model = RanzMarshall

 Building cylinder geometry.
 
 Internal Flow: 1
 Radius:    0.0039
 Height:    -1
 Direction: 0
 Rotation angle: 0
 Rotation axis: 0
 Center:    0.004, 0.004, 0.004
Done making the fluid eb levels ...

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

================================================================================
Warning: Setting particle max grid size to fluid max grid size
================================================================================

In MakeBaseGrids: BA HAS 16 GRIDS
Auto generating particles ...
Total number of generated particles: 215,120
Time spent in initializing particles 0.710247749


****************************************
  Coverage report:  Grids        Cells
          regular:      4        44960
          covered:      0        12800
              cut:     12         6240
****************************************

Bounding box for levelset imposed walls:
   Lo: 1e-15  -0.008  -0.008
   Hi: 0.016  0.016  0.016
Clean up auto-generated particles.

  IC Region                Generated           Removed         Remaining
  ****************  ****************  ****************  ****************
  full-domain                      0                 0                 0
  bed                        215,120            58,061           157,059
  ----------------  ----------------  ----------------  ----------------
  Total                      215,120            58,061           157,059
  ****************  ****************  ****************  ****************
Setting original sum_vol to 2.998926818e-07
Initial projection:
Before projection:
   max(abs(u/v/w))  = 0.015  0  0
   max(abs(gpx/gpy/gpz))  = 0  0  0
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 44.6112468

MLMG: Initial rhs               = 22.3056234
MLMG: Initial residual (resid0) = 22.3056234
MLMG: Final Iter. 12 resid, resid/bnorm = 1.475342071e-10, 6.614215816e-12
MLMG: Timers: Solve = 0.149018951 Iter = 0.114131953 Bottom = 0.00381549
After  projection:
   max(abs(u/v/w))  = 0.02199251829  0.001131161343  0.001189525565
Doing initial pressure iterations with dt = 0.0002

In initial_iterations: iter = 0
Before projection:
   max(abs(u/v/w))  = 0.014211585  0.004882459189  0.004977002289
   max(abs(gpx/gpy/gpz))  = 0  0  0
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 148.002174

MLMG: Initial rhs               = 74.00108702
MLMG: Initial residual (resid0) = 74.00108702
MLMG: Final Iter. 12 resid, resid/bnorm = 6.44145931e-10, 8.704546878e-12
MLMG: Timers: Solve = 0.147963392 Iter = 0.114595798 Bottom = 0.003602719
After  projection:
   max(abs(u/v/w))  = 0.02182750948  0.003257541671  0.003414179416

In initial_iterations: iter = 1
Before projection:
   max(abs(u/v/w))  = 0.0171546002  0.00484889597  0.004937791093
   max(abs(gpx/gpy/gpz))  = 7.863893069  1.409047577  1.423944431
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 147.5196537

MLMG: Initial rhs               = 73.75982686
MLMG: Initial residual (resid0) = 73.75982686
MLMG: Final Iter. 12 resid, resid/bnorm = 5.385139557e-10, 7.300911331e-12
MLMG: Timers: Solve = 0.148978021 Iter = 0.115205765 Bottom = 0.003557116
After  projection:
   max(abs(u/v/w))  = 0.02177110344  0.003233518523  0.003393322349

In initial_iterations: iter = 2
Before projection:
   max(abs(u/v/w))  = 0.0177426968  0.004815818082  0.004898945495
   max(abs(gpx/gpy/gpz))  = 15.69526012  2.807721899  2.836717291
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 147.038584

MLMG: Initial rhs               = 73.519292
MLMG: Initial residual (resid0) = 73.519292
MLMG: Final Iter. 12 resid, resid/bnorm = 2.686594835e-10, 3.65427191e-12
MLMG: Timers: Solve = 0.149154818 Iter = 0.1151377 Bottom = 0.003600048
After  projection:
   max(abs(u/v/w))  = 0.02178343022  0.00320998773  0.003372942066
Enclosed domain volume is   2.998926818e-07
Time spent in init      3.802746556

  Writing plotfile BENCH05-Size0008_wide-Chemistry_plt00000 at time 0
Regridding at step 0
Updating particle ebfactory
Regridding level-set on lev = 0
Also regridding refined level-set

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 1: from old_time 0 to new time 1.807175125e-05 with dt = 1.807175125e-05

Before projection (with small dt modification):
   max(abs(u/v/w))  = 0.01505648444  0.005329910363  0.005403699663
   max(abs(gpx/gpy/gpz))  = 23.46624449  4.196155293  4.238468343
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 182.2931522

MLMG: Initial rhs               = 91.14657612
MLMG: Initial residual (resid0) = 91.14657612
MLMG: Final Iter. 12 resid, resid/bnorm = 7.25478011e-10, 7.959465313e-12
MLMG: Timers: Solve = 0.149115789 Iter = 0.115105939 Bottom = 0.003652987
After  projection (with small dt modification):
   max(abs(u/v/w))  = 0.02278377929  0.003461130333  0.003571149439
Evolving particles on level: 0 ... with fluid dt 1.807175125e-05
done. 
   Time per fluid step      0.811840449
   Time per 38 particle steps 0.645133016
   Coupling time per step   0.069765076
   Time per chemistry step  0.028258294
   Time per step        1.613567461
Regridding at step 1

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 2: from old_time 1.807175125e-05 to new time 3.604330969e-05 with dt = 1.797155844e-05

Before projection:
   max(abs(u/v/w))  = 0.02683197833  0.008176814277  0.008205723777
   max(abs(gpx/gpy/gpz))  = 107.9786094  16.82539023  16.88966324
Min and Max of epf 0.2712174507 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 318.5391155

MLMG: Initial rhs               = 159.2695577
MLMG: Initial residual (resid0) = 159.2695577
MLMG: Final Iter. 12 resid, resid/bnorm = 1.239854663e-09, 7.78463054e-12
MLMG: Timers: Solve = 0.149792545 Iter = 0.115580854 Bottom = 0.003701283
After  projection:
   max(abs(u/v/w))  = 0.02520309237  0.004360964193  0.004673968666
Evolving particles on level: 0 ... with fluid dt 1.797155844e-05
done. 
   Time per fluid step      0.834567506
   Time per 38 particle steps 0.642576235
   Coupling time per step   0.064600118
   Time per chemistry step  0.028702772
   Time per step        1.58031404
Regridding at step 2

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 3: from old_time 3.604330969e-05 to new time 5.391480952e-05 with dt = 1.787149982e-05

Before projection:
   max(abs(u/v/w))  = 0.047577514  0.009959406584  0.009923317859
   max(abs(gpx/gpy/gpz))  = 192.3264757  24.73779614  24.75242561
Min and Max of epf 0.2712339692 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 452.0701138

MLMG: Initial rhs               = 226.0350569
MLMG: Initial residual (resid0) = 226.0350569
MLMG: Final Iter. 12 resid, resid/bnorm = 1.424670326e-09, 6.302873305e-12
MLMG: Timers: Solve = 0.14941171 Iter = 0.11557082 Bottom = 0.00362122
After  projection:
   max(abs(u/v/w))  = 0.02761727253  0.004754436139  0.005169830335
Evolving particles on level: 0 ... with fluid dt 1.787149982e-05
done. 
   Time per fluid step      0.830216051
   Time per 37 particle steps 0.628458903
   Coupling time per step   0.066335216
   Time per chemistry step  0.028657992
   Time per step        1.563584748
Regridding at step 3

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 4: from old_time 5.391480952e-05 to new time 7.168446886e-05 with dt = 1.776965934e-05

Before projection:
   max(abs(u/v/w))  = 0.06767685734  0.0112003651  0.01106395261
   max(abs(gpx/gpy/gpz))  = 275.5914687  30.3519996  30.16238199
Min and Max of epf 0.2712610448 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 581.8119724

MLMG: Initial rhs               = 290.9059862
MLMG: Initial residual (resid0) = 290.9059862
MLMG: Final Iter. 12 resid, resid/bnorm = 1.065531441e-09, 3.662803419e-12
MLMG: Timers: Solve = 0.149296549 Iter = 0.115439627 Bottom = 0.003649964
After  projection:
   max(abs(u/v/w))  = 0.02998394917  0.004932315462  0.005390151976
Evolving particles on level: 0 ... with fluid dt 1.776965934e-05
done. 
   Time per fluid step      0.831136988
   Time per 37 particle steps 0.644754884
   Coupling time per step   0.065316383
   Time per chemistry step  0.028418119
   Time per step        1.579410363
Regridding at step 4

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 5: from old_time 7.168446886e-05 to new time 8.934981363e-05 with dt = 1.766534477e-05

Before projection:
   max(abs(u/v/w))  = 0.08721132193  0.01210817983  0.01185815599
   max(abs(gpx/gpy/gpz))  = 357.8644136  34.50829176  34.06072695
Min and Max of epf 0.2712983842 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 707.7223889

MLMG: Initial rhs               = 353.8611944
MLMG: Initial residual (resid0) = 353.8611944
MLMG: Final Iter. 12 resid, resid/bnorm = 1.243839698e-09, 3.515049735e-12
MLMG: Timers: Solve = 0.149688085 Iter = 0.115619696 Bottom = 0.003788147
After  projection:
   max(abs(u/v/w))  = 0.03229966597  0.00542112622  0.006050648304
Evolving particles on level: 0 ... with fluid dt 1.766534477e-05
done. 
   Time per fluid step      0.829375023
   Time per 37 particle steps 0.631207531
   Coupling time per step   0.064826542
   Time per chemistry step  0.028309953
   Time per step        1.563135403
Regridding at step 5

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 6: from old_time 8.934981363e-05 to new time 0.0001069100894 with dt = 1.756027573e-05

Before projection:
   max(abs(u/v/w))  = 0.1062119692  0.012804629  0.01244131262
   max(abs(gpx/gpy/gpz))  = 439.1464109  37.73144706  39.39367346
Min and Max of epf 0.2713456842 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 829.8057219

MLMG: Initial rhs               = 414.902861
MLMG: Initial residual (resid0) = 414.902861
MLMG: Final Iter. 12 resid, resid/bnorm = 1.422815643e-09, 3.429274119e-12
MLMG: Timers: Solve = 0.148573298 Iter = 0.115081335 Bottom = 0.003668458
After  projection:
   max(abs(u/v/w))  = 0.03456444953  0.005812253368  0.00653793862
Evolving particles on level: 0 ... with fluid dt 1.756027573e-05
done. 
   Time per fluid step      0.826699083
   Time per 37 particle steps 0.630734596
   Coupling time per step   0.065736009
   Time per chemistry step  0.028418256
   Time per step        1.561755772
Regridding at step 6

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 7: from old_time 0.0001069100894 to new time 0.0001243655039 with dt = 1.745541458e-05

Before projection:
   max(abs(u/v/w))  = 0.1247015721  0.01336594923  0.0128951824
   max(abs(gpx/gpy/gpz))  = 519.4209155  45.73815083  48.15298558
Min and Max of epf 0.2714026399 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 947.9092872

MLMG: Initial rhs               = 473.9546436
MLMG: Initial residual (resid0) = 473.9546436
MLMG: Final Iter. 12 resid, resid/bnorm = 2.72914491e-09, 5.758240681e-12
MLMG: Timers: Solve = 0.148550789 Iter = 0.115034515 Bottom = 0.003618709
After  projection:
   max(abs(u/v/w))  = 0.03677890424  0.006111997683  0.006913788525
Evolving particles on level: 0 ... with fluid dt 1.745541458e-05
done. 
   Time per fluid step      0.828561403
   Time per 36 particle steps 0.618348511
   Coupling time per step   0.065530718
   Time per chemistry step  0.028650915
   Time per step        1.551173042
Regridding at step 7

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 8: from old_time 0.0001243655039 to new time 0.0001417169227 with dt = 1.735141875e-05

Before projection:
   max(abs(u/v/w))  = 0.1426955987  0.01384080962  0.01326956329
   max(abs(gpx/gpy/gpz))  = 598.6668902  54.28785096  57.11421366
Min and Max of epf 0.2714689522 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1062.091607

MLMG: Initial rhs               = 531.0458035
MLMG: Initial residual (resid0) = 531.0458035
MLMG: Final Iter. 12 resid, resid/bnorm = 2.123627496e-09, 3.998953541e-12
MLMG: Timers: Solve = 0.148266492 Iter = 0.114576254 Bottom = 0.003799364
After  projection:
   max(abs(u/v/w))  = 0.03894398439  0.006346603768  0.007220170987
Evolving particles on level: 0 ... with fluid dt 1.735141875e-05
done. 
   Time per fluid step      0.826917255
   Time per 36 particle steps 0.617966477
   Coupling time per step   0.064857975
   Time per chemistry step  0.028777343
   Time per step        1.548681977
Regridding at step 8

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 9: from old_time 0.0001417169227 to new time 0.0001589656621 with dt = 1.724873944e-05

Before projection:
   max(abs(u/v/w))  = 0.1602084219  0.01426036681  0.01489108714
   max(abs(gpx/gpy/gpz))  = 676.8660339  63.01725849  66.23639738
Min and Max of epf 0.2715443201 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1172.445058

MLMG: Initial rhs               = 586.2225292
MLMG: Initial residual (resid0) = 586.2225292
MLMG: Final Iter. 12 resid, resid/bnorm = 2.165187141e-09, 3.693456039e-12
MLMG: Timers: Solve = 0.149445297 Iter = 0.115761814 Bottom = 0.003683957
After  projection:
   max(abs(u/v/w))  = 0.04106038608  0.006589722682  0.007482817994
Evolving particles on level: 0 ... with fluid dt 1.724873944e-05
done. 
   Time per fluid step      0.833924447
   Time per 36 particle steps 0.623841884
   Coupling time per step   0.064694488
   Time per chemistry step  0.028757573
   Time per step        1.561336948
Regridding at step 9

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 10: from old_time 0.0001589656621 to new time 0.0001761134581 with dt = 1.7147796e-05

Before projection:
   max(abs(u/v/w))  = 0.1772533555  0.01602370884  0.01708026346
   max(abs(gpx/gpy/gpz))  = 754.0015071  71.89928536  75.48343931
Min and Max of epf 0.2716284532 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1279.076636

MLMG: Initial rhs               = 639.5383178
MLMG: Initial residual (resid0) = 639.5383178
MLMG: Final Iter. 12 resid, resid/bnorm = 4.397294973e-09, 6.8757334e-12
MLMG: Timers: Solve = 0.148612695 Iter = 0.115042058 Bottom = 0.003621723
After  projection:
   max(abs(u/v/w))  = 0.04312888063  0.006913951038  0.007715913957
Evolving particles on level: 0 ... with fluid dt 1.7147796e-05
done. 
   Time per fluid step      0.827088685
   Time per 36 particle steps 0.616683796
   Coupling time per step   0.066477698
   Time per chemistry step  0.028720755
   Time per step        1.548373699

**************************************************************************************************************
  Species mass balance for interval:      0.000000  to     0.000176

  Species     mass(t+dt)      mass(t)     production      mass(in)     mass(out)      net accu       flux   
  CH4         2.1642e-09    2.1642e-09    0.0000e+00    8.9444e-13    9.0817e-13   -8.2718e-25   -1.3734e-14
  H2          4.3284e-09    4.3284e-09    0.0000e+00    1.7889e-12    1.8163e-12   -1.6544e-24   -2.7468e-14
  CO          2.1642e-09    2.1642e-09    0.0000e+00    8.9444e-13    9.0817e-13   -8.2718e-25   -1.3734e-14
  H2O         4.3284e-09    4.3284e-09    0.0000e+00    1.7889e-12    1.8163e-12   -1.6544e-24   -2.7468e-14
  CO2         2.1642e-09    2.1642e-09    0.0000e+00    8.9444e-13    9.0817e-13   -8.2718e-25   -1.3734e-14
  O2          2.1642e-09    2.1642e-09    0.0000e+00    8.9444e-13    9.0817e-13   -8.2718e-25   -1.3734e-14
  N2          4.3284e-09    4.3284e-09    0.0000e+00    1.7889e-12    1.8163e-12   -1.6544e-24   -2.7468e-14
  Fe2O3       4.9342e-05    4.9342e-05    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00
  FeO         4.9342e-05    4.9342e-05    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00
  inert       6.5789e-05    6.5789e-05    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00    0.0000e+00
--------------------------------------------------------------------------------------------------------------
  Total       1.6449e-04    1.6449e-04    0.0000e+00    8.9444e-12    9.0817e-12   -8.2718e-24   -1.3734e-13

  total number of particles =          157,059
  |(total acc) - (net flux)| =      1.3734e-13
**************************************************************************************************************

  Writing plotfile BENCH05-Size0008_wide-Chemistry_plt00010 at time 0.0001761134581
Time spent in main (after init) 15.71363814
Time spent in main      19.5163847

AMReX (26.10-109-g1aebac90c563) finalized
