Initializing AMReX (26.10-139-g01130277b04d)...
MPI initialized with 4 MPI processes
MPI initialized with thread support level 0
OMP initialized with 1 OMP threads
AMReX (26.10-139-g01130277b04d) initialized
   MFIX git describe: 26.10-45-g517829837eb0
AMReX-Hydro git hash: 154572aa6cf22c35a69729c74a0276909b96d5e3
Number of levels: 1
RunType is Standard
Auto-generating level-set parameters:
  eb_refinement = 1
  levelset_pad  = 2
  eb_pad        = 2

================================================================================
Warning: Overwriting amr.check_file with value from mfix.check_file
================================================================================


================================================================================
Warning: Overwriting amr.plt_regtest with value from mfix.plt_regtest
================================================================================


================================================================================
Warning: Overwriting amr.plot_int with value from output.plot.int
================================================================================


================================================================================
Warning: Overwriting amr.plot_file with value from output.plot.file
================================================================================

Simulation is transient

--------------------------------------------------------------------------------
Info: Max effective viscosity factor not specified.
Using default 1e+06
--------------------------------------------------------------------------------

Particle-particle conduction is disabled.
Particle-fluid-particle conduction is disabled.

Load balance setup:
   Type:      DualGrid
   Strategy:  KnapSack
   Weighting: ParticleCount

Drag model: BVK2
Convection model not specified. Setting default:
  mfix.convection.model = RanzMarshall

 Building cylinder geometry.
 
 Internal Flow: 1
 Radius:    0.0039
 Height:    -1
 Direction: 0
 Rotation angle: 0
 Rotation axis: 0
 Center:    0.004, 0.004, 0.004
Done making the fluid eb levels ...

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

================================================================================
Warning: Setting particle max grid size to fluid max grid size
================================================================================

In MakeBaseGrids: BA HAS 16 GRIDS
Auto generating particles ...
Total number of generated particles: 215,120
Time spent in initializing particles 0.805695796


****************************************
  Coverage report:  Grids        Cells
          regular:      4        44960
          covered:      0        12800
              cut:     12         6240
****************************************

Bounding box for levelset imposed walls:
   Lo: 1e-15  -0.008  -0.008
   Hi: 0.016  0.016  0.016
Clean up auto-generated particles.

  IC Region                Generated           Removed         Remaining
  ****************  ****************  ****************  ****************
  full-domain                      0                 0                 0
  bed                        215,120            58,061           157,059
  ----------------  ----------------  ----------------  ----------------
  Total                      215,120            58,061           157,059
  ****************  ****************  ****************  ****************
Setting original sum_vol to 2.998926818e-07
Initial projection:
Before projection:
   max(abs(u/v/w))  = 0.015  0  0
   max(abs(gpx/gpy/gpz))  = 0  0  0
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 44.6112468

MLMG: Initial rhs               = 22.3056234
MLMG: Initial residual (resid0) = 22.3056234
MLMG: Final Iter. 12 resid, resid/bnorm = 1.475768396e-10, 6.616127108e-12
MLMG: Timers: Solve = 0.149024345 Iter = 0.11377801 Bottom = 0.003637103
After  projection:
   max(abs(u/v/w))  = 0.02199251829  0.001131161343  0.001189525565
Doing initial pressure iterations with dt = 0.0002

In initial_iterations: iter = 0
Before projection:
   max(abs(u/v/w))  = 0.014211585  0.004882459189  0.004977002289
   max(abs(gpx/gpy/gpz))  = 0  0  0
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 148.002174

MLMG: Initial rhs               = 74.00108702
MLMG: Initial residual (resid0) = 74.00108702
MLMG: Final Iter. 12 resid, resid/bnorm = 6.681746545e-10, 9.029254588e-12
MLMG: Timers: Solve = 0.147665793 Iter = 0.113768103 Bottom = 0.003814108
After  projection:
   max(abs(u/v/w))  = 0.02182752578  0.002007162363  0.002102075339

In initial_iterations: iter = 1
Before projection:
   max(abs(u/v/w))  = 0.01715471639  0.004871918643  0.004962549299
   max(abs(gpx/gpy/gpz))  = 7.863898951  0.6377384995  0.6836572841
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 147.5196537

MLMG: Initial rhs               = 73.75982684
MLMG: Initial residual (resid0) = 73.75982684
MLMG: Final Iter. 12 resid, resid/bnorm = 5.329256481e-10, 7.225147765e-12
MLMG: Timers: Solve = 0.147526141 Iter = 0.114058145 Bottom = 0.003841185
After  projection:
   max(abs(u/v/w))  = 0.02177113833  0.002773963131  0.002889364751

In initial_iterations: iter = 2
Before projection:
   max(abs(u/v/w))  = 0.01774292217  0.004861723965  0.00494825502
   max(abs(gpx/gpy/gpz))  = 15.69527858  1.377175469  1.446111575
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 147.0385839

MLMG: Initial rhs               = 73.51929195
MLMG: Initial residual (resid0) = 73.51929195
MLMG: Final Iter. 12 resid, resid/bnorm = 2.257256049e-10, 3.070290789e-12
MLMG: Timers: Solve = 0.14780659 Iter = 0.114135454 Bottom = 0.003879743
After  projection:
   max(abs(u/v/w))  = 0.0217799692  0.003183185454  0.003316757802
Enclosed domain volume is   2.998926818e-07
Time spent in init      3.904140455

  Writing plotfile BENCH05-Size0008_wide-Chemistry_plt00000 at time 0
Regridding at step 0
Updating particle ebfactory
Regridding level-set on lev = 0
Also regridding refined level-set

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 1: from old_time 0 to new time 1.807175116e-05 with dt = 1.807175116e-05

Before projection (with small dt modification):
   max(abs(u/v/w))  = 0.01505648261  0.004738505028  0.00475849595
   max(abs(gpx/gpy/gpz))  = 23.4662823  2.128787563  2.205468023
Min and Max of epf 0.2712117833 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 182.2931523

MLMG: Initial rhs               = 91.14657615
MLMG: Initial residual (resid0) = 91.14657615
MLMG: Final Iter. 12 resid, resid/bnorm = 7.251361733e-10, 7.955714893e-12
MLMG: Timers: Solve = 0.147834456 Iter = 0.113782161 Bottom = 0.003657836
After  projection (with small dt modification):
   max(abs(u/v/w))  = 0.02281090062  0.002039600208  0.002315378864
Evolving particles on level: 0 ... with fluid dt 1.807175116e-05
done. 
   Time per fluid step      0.811805211
   Time per 38 particle steps 0.649161134
   Coupling time per step   0.067655891
   Time per chemistry step  0.028219972
   Time per step        1.61473481
Regridding at step 1

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 2: from old_time 1.807175116e-05 to new time 3.604288715e-05 with dt = 1.797113599e-05

Before projection:
   max(abs(u/v/w))  = 0.02681226687  0.005836315522  0.005691195537
   max(abs(gpx/gpy/gpz))  = 107.9543545  8.374418462  9.273648694
Min and Max of epf 0.2712174435 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 318.5347437

MLMG: Initial rhs               = 159.2673719
MLMG: Initial residual (resid0) = 159.2673719
MLMG: Final Iter. 12 resid, resid/bnorm = 1.239833236e-09, 7.784602845e-12
MLMG: Timers: Solve = 0.147050942 Iter = 0.113619768 Bottom = 0.003829542
After  projection:
   max(abs(u/v/w))  = 0.02524924737  0.003281428983  0.003695600231
Evolving particles on level: 0 ... with fluid dt 1.797113599e-05
done. 
   Time per fluid step      0.828344415
   Time per 38 particle steps 0.644713252
   Coupling time per step   0.065142767
   Time per chemistry step  0.028311869
   Time per step        1.576408875
Regridding at step 2

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 3: from old_time 3.604288715e-05 to new time 5.391431677e-05 with dt = 1.787142962e-05

Before projection:
   max(abs(u/v/w))  = 0.04753113255  0.006581978554  0.006336075521
   max(abs(gpx/gpy/gpz))  = 192.2816315  14.05904283  15.17102024
Min and Max of epf 0.2712339391 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 452.0718766

MLMG: Initial rhs               = 226.0359383
MLMG: Initial residual (resid0) = 226.0359383
MLMG: Final Iter. 12 resid, resid/bnorm = 1.424811547e-09, 6.303473498e-12
MLMG: Timers: Solve = 0.148395278 Iter = 0.114483003 Bottom = 0.003702879
After  projection:
   max(abs(u/v/w))  = 0.02768826314  0.004167676031  0.004629295839
Evolving particles on level: 0 ... with fluid dt 1.787142962e-05
done. 
   Time per fluid step      0.828045125
   Time per 37 particle steps 0.63399807
   Coupling time per step   0.065361456
   Time per chemistry step  0.02777389
   Time per step        1.565035983
Regridding at step 3

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 4: from old_time 5.391431677e-05 to new time 7.16863061e-05 with dt = 1.777198933e-05

Before projection:
   max(abs(u/v/w))  = 0.06759605467  0.007374890746  0.006990073112
   max(abs(gpx/gpy/gpz))  = 275.5045065  21.1020983  21.45035686
Min and Max of epf 0.2712609676 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 581.8752264

MLMG: Initial rhs               = 290.9376132
MLMG: Initial residual (resid0) = 290.9376132
MLMG: Final Iter. 12 resid, resid/bnorm = 1.067606559e-09, 3.669537764e-12
MLMG: Timers: Solve = 0.148002014 Iter = 0.114581164 Bottom = 0.003710244
After  projection:
   max(abs(u/v/w))  = 0.03007612074  0.004888809133  0.00537161067
Evolving particles on level: 0 ... with fluid dt 1.777198933e-05
done. 
   Time per fluid step      0.826240639
   Time per 37 particle steps 0.633209892
   Coupling time per step   0.06595344
   Time per chemistry step  0.027791993
   Time per step        1.562897392
Regridding at step 4

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 5: from old_time 7.16863061e-05 to new time 8.935580204e-05 with dt = 1.766949594e-05

Before projection:
   max(abs(u/v/w))  = 0.0870940195  0.008118231492  0.007598569142
   max(abs(gpx/gpy/gpz))  = 357.7096866  28.59431563  28.9476102
Min and Max of epf 0.2712982317 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 707.8484696

MLMG: Initial rhs               = 353.9242348
MLMG: Initial residual (resid0) = 353.9242348
MLMG: Final Iter. 12 resid, resid/bnorm = 1.194579768e-09, 3.375241509e-12
MLMG: Timers: Solve = 0.147673514 Iter = 0.113814124 Bottom = 0.003696619
After  projection:
   max(abs(u/v/w))  = 0.0324114816  0.005388470709  0.006029773269
Evolving particles on level: 0 ... with fluid dt 1.766949594e-05
done. 
   Time per fluid step      0.825033971
   Time per 37 particle steps 0.631608861
   Coupling time per step   0.064500033
   Time per chemistry step  0.027896054
   Time per step        1.558842092
Regridding at step 5

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 6: from old_time 8.935580204e-05 to new time 0.0001069226982 with dt = 1.756689616e-05

Before projection:
   max(abs(u/v/w))  = 0.106063641  0.008833618049  0.008747788134
   max(abs(gpx/gpy/gpz))  = 438.9039291  36.39268723  37.40026379
Min and Max of epf 0.2713454319 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 830.035934

MLMG: Initial rhs               = 415.017967
MLMG: Initial residual (resid0) = 415.017967
MLMG: Final Iter. 12 resid, resid/bnorm = 1.421181395e-09, 3.424385226e-12
MLMG: Timers: Solve = 0.148202752 Iter = 0.114429168 Bottom = 0.003591215
After  projection:
   max(abs(u/v/w))  = 0.0346951635  0.005790911664  0.006514597912
Evolving particles on level: 0 ... with fluid dt 1.756689616e-05
done. 
   Time per fluid step      0.825801451
   Time per 37 particle steps 0.632723463
   Coupling time per step   0.065779767
   Time per chemistry step  0.028275922
   Time per step        1.562530228
Regridding at step 6

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 7: from old_time 0.0001069226982 to new time 0.000124387851 with dt = 1.746515278e-05

Before projection:
   max(abs(u/v/w))  = 0.124528642  0.009978864224  0.0107785246
   max(abs(gpx/gpy/gpz))  = 519.0669236  44.4249925  46.31407092
Min and Max of epf 0.2714022764 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 948.2954258

MLMG: Initial rhs               = 474.1477129
MLMG: Initial residual (resid0) = 474.1477129
MLMG: Final Iter. 12 resid, resid/bnorm = 2.815490063e-09, 5.938001991e-12
MLMG: Timers: Solve = 0.150236221 Iter = 0.115687441 Bottom = 0.00368973
After  projection:
   max(abs(u/v/w))  = 0.03692823426  0.00608817008  0.0068872866
Evolving particles on level: 0 ... with fluid dt 1.746515278e-05
done. 
   Time per fluid step      0.827382743
   Time per 36 particle steps 0.62343415
   Coupling time per step   0.064569859
   Time per chemistry step  0.027851169
   Time per step        1.552957852
Regridding at step 7

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 8: from old_time 0.000124387851 to new time 0.000141752461 with dt = 1.736461007e-05

Before projection:
   max(abs(u/v/w))  = 0.1425041963  0.0117948001  0.01288046407
   max(abs(gpx/gpy/gpz))  = 598.1791447  52.62228142  55.63630627
Min and Max of epf 0.2714684852 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1062.678076

MLMG: Initial rhs               = 531.3390379
MLMG: Initial residual (resid0) = 531.3390379
MLMG: Final Iter. 12 resid, resid/bnorm = 2.1388189e-09, 4.025337397e-12
MLMG: Timers: Solve = 0.149648553 Iter = 0.115116864 Bottom = 0.003581956
After  projection:
   max(abs(u/v/w))  = 0.03911162421  0.006321537108  0.007191503641
Evolving particles on level: 0 ... with fluid dt 1.736461007e-05
done. 
   Time per fluid step      0.833199966
   Time per 36 particle steps 0.61945249
   Coupling time per step   0.065899692
   Time per chemistry step  0.028116956
   Time per step        1.555962887
Regridding at step 8

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 9: from old_time 0.000141752461 to new time 0.0001590181054 with dt = 1.726564433e-05

Before projection:
   max(abs(u/v/w))  = 0.160004503  0.01363416457  0.01504175748
   max(abs(gpx/gpy/gpz))  = 676.2218055  60.94418239  65.31987066
Min and Max of epf 0.271543779 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1173.276694

MLMG: Initial rhs               = 586.6383472
MLMG: Initial residual (resid0) = 586.6383472
MLMG: Final Iter. 12 resid, resid/bnorm = 2.22436114e-09, 3.791707702e-12
MLMG: Timers: Solve = 0.148073799 Iter = 0.114177038 Bottom = 0.0036223
After  projection:
   max(abs(u/v/w))  = 0.04124602932  0.006513875686  0.007451450232
Evolving particles on level: 0 ... with fluid dt 1.726564433e-05
done. 
   Time per fluid step      0.82627895
   Time per 36 particle steps 0.620027413
   Coupling time per step   0.064550595
   Time per chemistry step  0.028311755
   Time per step        1.549530577
Regridding at step 9

On level 0 updated BC areas:
BC: 0  area: 4.776607274e-05
BC: 1  area: 4.776607274e-05

 ============   NEW TIME STEP   ============ 

   Step 10: from old_time 0.0001590181054 to new time 0.0001761866629 with dt = 1.716855748e-05

Before projection:
   max(abs(u/v/w))  = 0.1770420254  0.01548962913  0.01725173592
   max(abs(gpx/gpy/gpz))  = 753.1789677  69.35410345  75.32084892
Min and Max of epf 0.2716278916 1
Nodal Projection:
 >> Before projection:
  * On lev 0 max(abs(rhs)) = 1280.194078

MLMG: Initial rhs               = 640.0970389
MLMG: Initial residual (resid0) = 640.0970389
MLMG: Final Iter. 12 resid, resid/bnorm = 3.436030127e-09, 5.367983163e-12
MLMG: Timers: Solve = 0.147151002 Iter = 0.11378565 Bottom = 0.003822899
After  projection:
   max(abs(u/v/w))  = 0.04333221318  0.006679636746  0.00768215459
Evolving particles on level: 0 ... with fluid dt 1.716855748e-05
done. 
   Time per fluid step      0.824788277
   Time per 36 particle steps 0.635654821
   Coupling time per step   0.076508471
   Time per chemistry step  0.028305593
   Time per step        1.564447304

**************************************************************************************************************
  Species mass balance for interval:      0.000000  to     0.000176

  Species     mass(t+dt)      mass(t)     production      mass(in)     mass(out)      net accu       flux   
  CH4         2.1642e-09    2.1642e-09    0.0000e+00    8.9481e-13    9.0856e-13   -4.1359e-25   -1.3748e-14
  H2          4.3284e-09    4.3284e-09    0.0000e+00    1.7896e-12    1.8171e-12   -8.2718e-25   -2.7497e-14
  CO          2.1642e-09    2.1642e-09    0.0000e+00    8.9481e-13    9.0856e-13   -4.1359e-25   -1.3748e-14
  H2O         4.3284e-09    4.3284e-09    0.0000e+00    1.7896e-12    1.8171e-12   -8.2718e-25   -2.7497e-14
  CO2         2.1642e-09    2.1642e-09    0.0000e+00    8.9481e-13    9.0856e-13   -4.1359e-25   -1.3748e-14
  O2          2.1642e-09    2.1642e-09    0.0000e+00    8.9481e-13    9.0856e-13   -4.1359e-25   -1.3748e-14
  N2          4.3284e-09    4.3284e-09    0.0000e+00    1.7896e-12    1.8171e-12   -8.2718e-25   -2.7497e-14
  Fe2O3       4.9342e-05    4.9342e-05    0.0000e+00    0.0000e+00    0.0000e+00    6.7763e-21    0.0000e+00
  FeO         4.9342e-05    4.9342e-05    0.0000e+00    0.0000e+00    0.0000e+00    6.7763e-21    0.0000e+00
  inert       6.5789e-05    6.5789e-05    0.0000e+00    0.0000e+00    0.0000e+00   -1.3553e-20    0.0000e+00
--------------------------------------------------------------------------------------------------------------
  Total       1.6449e-04    1.6449e-04    0.0000e+00    8.9481e-12    9.0856e-12   -4.1359e-24   -1.3748e-13

  total number of particles =          157,059
  |(total acc) - (net flux)| =      1.3748e-13
**************************************************************************************************************

  Writing plotfile BENCH05-Size0008_wide-Chemistry_plt00010 at time 0.0001761866629
Time spent in main (after init) 15.70591534
Time spent in main      19.6100558

AMReX (26.10-139-g01130277b04d) finalized
