2026-09-30-003 / BioToy

Build/Test information:
- Build directory: Exec
- Parallel run
  - MPI numprocs = 4
- Files:
  - input file: inputs
  - auxillary file 1: BioToy/bio_toy_ini_fennel_classic64.nc
  - auxillary file 2: BioToy/bio_toy_grd_classic64.nc
  - auxillary file 3: BioToy/bio_toy_frc_classic64.nc
- Dimensionality: 3
Compilation:
- Successful
- Compilation time: 133.716 s
- Compilation command:
  make -j8 AMREX_HOME=/scratch/AMReX_RegTesting/amrex/ DEBUG=FALSE USE_ACC=FALSE USE_MPI=TRUE USE_OMP=FALSE DIM=3 USE_PNETCDF=TRUE COMP=g++ TEST=TRUE USE_ASSERTION=TRUE PRECISION=FLOAT
- make output
Execution:
- Execution time: 1.349 s
- Execution command:
  mpiexec -n 4 ./REMORA3d.gnu.FLOAT.TEST.MPI.PNC.ex inputs remora.plot_file=BioToy_plt remora.check_file=BioToy_chk amr.checkpoint_files_output=0 remora.max_step=100 remora.plot_int=100 fabarray.mfiter_tile_size=1024 1024 1024
- execution output
- execution stderr
- job_info
Comparison:
- Failed

/scratch/AMReX_RegTesting/amrex/Tools/Plotfile//fcompare.gnu.ex --abort_if_not_all_found -n 0 --rel_tol 0.0001 --abs_tol 0.0001 --allow_diff_dx /scratch/AMReX_RegTesting/rt-REMORA/REMORA-benchmarks/BioToy_plt00100 BioToy_plt00100

variable name absolute error relative error

(||A - B||) (||A - B||/||A||)

level = 0

temp 0.01225530823 0.002745552376

salt 0.0001658866737 4.750897177e-06

NO3 0.0008215343518 5.47026197e-05

NH4 0.0001400888017 0.0007346040172

chlorophyll 0.002212412339 0.07159918687

phytoplankton 0.0006325995445 0.01582902645

zooplankton 2.099539544e-06 0.002141939762

LdetritusN 5.031329552e-05 0.02212676773

SdetritusN 8.044166331e-05 0.001757398294

LdetritusC 5.066956486e-05 0.02119557016

SdetritusC 0.0001138067459 0.00184659212

TIC 0.05341602381 2.529991591e-05

alkalinity 0.008038619584 3.417127766e-06

x_velocity 0.0003096500588 0.005399150285

y_velocity 0.0001523125496 0.02471405896

z_velocity 0.0 0.0

variable name	absolute error	relative error
	(\|\|A - B\|\|)	(\|\|A - B\|\|/\|\|A\|\|)
level = 0
temp	0.01225530823	0.002745552376
salt	0.0001658866737	4.750897177e-06
NO3	0.0008215343518	5.47026197e-05
NH4	0.0001400888017	0.0007346040172
chlorophyll	0.002212412339	0.07159918687
phytoplankton	0.0006325995445	0.01582902645
zooplankton	2.099539544e-06	0.002141939762
LdetritusN	5.031329552e-05	0.02212676773
SdetritusN	8.044166331e-05	0.001757398294
LdetritusC	5.066956486e-05	0.02119557016
SdetritusC	0.0001138067459	0.00184659212
TIC	0.05341602381	2.529991591e-05
alkalinity	0.008038619584	3.417127766e-06
x_velocity	0.0003096500588	0.005399150285
y_velocity	0.0001523125496	0.02471405896
z_velocity	0.0	0.0

2026-09-30-003 / BioToy

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