commit 0c329e66010267662a82219f7de7abbd231463f4 Author: Luca Fedeli Date: Wed Apr 2 17:57:18 2025 +0200 CI tests: upgrade codeql-action to v3 (#62) .github/workflows/codeql-analysis.yml commit 91515a5fc8505e18b0bedc48f58f688ef084bc4a Author: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> Date: Wed Apr 2 01:18:40 2025 -0700 Update mu_0, alpha to enforce consistency between constants (#59) * Update mu_0, alpha to enforce consistency between constants * Add comments to note differences from CODATA 2022 multi_physics/QED/QED_tests/test_picsar_phys_constants.cpp multi_physics/QED/include/picsar_qed/physics/phys_constants.h commit d9ac4a833ae7beee6c02f837c363b46b64a34dcd Author: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> Date: Wed Apr 2 01:01:49 2025 -0700 CI: Upgrade Ubuntu version to 22.04 (#60) .github/workflows/codeql-analysis.yml .github/workflows/linux.yml commit eccf1f45a8c77edd95b85400f17ce1d33146dd35 Author: Luca Fedeli Date: Thu Mar 27 16:50:00 2025 +0100 Update physical constants to CODATA 2022 (#58) * update physical constants to CODATA 2022 * fix bug * use codata 2022 in library and tests * remove file included by mistake * update validation script multi_physics/QED/QED_tests/test_picsar_chi_functions.cpp multi_physics/QED/QED_tests/test_picsar_phys_constants.cpp multi_physics/QED/QED_tests/test_picsar_schwinger_engine_core.cpp multi_physics/QED/QED_tests/validation/validation.ipynb multi_physics/QED/include/picsar_qed/physics/phys_constants.h commit 47b393993f860943e387b4b5d79407ee7f52d1ab Author: Luca Fedeli Date: Fri Jan 17 03:01:43 2025 +0100 Add clang-tidy CI test (#56) * initial work to add clang-tidy workflow * add permission to run script * add missing dependencies * update clang-tidy config * start fixing issues with braces * continue fixing issues with braces * continue fixing issues with braces * fail if clang-tidy finds something wrong * add more braces * add more braces * fix an performance-type-promotion-in-math-fn issue * address modernize-concat-nested-namespaces issues * move to C++17 * add [[nodiscard]] in picsar_array.hpp * fix some bugprone-narrowing-conversions issues * add [[nodiscard]] in picsar_span.hpp * fix modernize-use-equals-default issues * fix readability-qualified-auto issue * fix readability-braces-around-statements issues * fix readability-braces-around-statements issues * fix readability-braces-around-statements issues * fix readability-braces-around-statements issues * add [[nodiscard]] in picsar_tables.hpp * fix bug * fix modernize-use-auto issues * fix narrowing conversion issue * fix modernize-concat-nested-namespaces issue * fix readability-avoid-const-params-in-decls issues * fix performance-type-promotion-in-math-fn issues * fix const correctness * fix modernize-use-using issues * add [[nodiscard]] in engine tables * fix bug * fix readability-braces-around-statements issues * fix performance-unnecessary-value-param * fix cppcoreguidelines-prefer-member-initializer issue * add [[nodiscard]] * fix const correctness * fix bugprone-integer-division issue * fix bug * fix performance-type-promotion-in-math-fn issue * fix bugprone-branch-clone issue * fix cppcoreguidelines-prefer-member-initializer issues * fix cppcoreguidelines-prefer-member-initializer issue * fix modernize auto issue * fix const correctness * fix misc-const-correctness issue * address readability-braces-around-statements issues * fix some const correctness issues * fix bug * fix bugprone-reserved-identifier issue * fix modernize-use-nodiscard issues * fix const correctness issues * replace PXRMP_CONSTEXPR_IF with if constexpr (we are moving to C++17) * address bugprone-exception-escape issue * address readability-avoid-const-params-in-decls issues * fix bugprone-reserved-identifier issue * address readability-qualified-auto issues * address readability-string-compare issues * address readability-misleading-indentation issue * address modernize-use-using issues * fix some cppcoreguidelines-prefer-member-initializer issues * fix some modernize-pass-by-value issues * fix const correctness and bugprone-exception-escape issues * fix more const correctness issues * address some cppcoreguidelines-prefer-member-initializer issues * address readability-suspicious-call-argument issues * fix cppcoreguidelines-prefer-member-initializer issues * address unused variable issue * try to address issue of function that may throw exception * fix miscellaneous issues * fix readability-duplicate-include issue * fix performance-type-promotion-in-math-fn issue * address bugprone-integer-division issues * fix misc-unused-alias-decls issue * attempt to fix a performance-unnecessary-copy-initialization issue * fix miscellaneous issues * fix miscellaneous issues * fix bugprone-narrowing-conversions issues * fix performance-unnecessary-value-param and bugprone-narrowing-conversion issues * fix miscellaneous issues * fix bugprone-exception-escape issues * fix bugs * fix issue in doc * add space at the end of the file * add NOLINT * Update .github/workflows/clang_tidy.yml Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> * Update .github/workflows/dependencies/clang15.sh --------- Co-authored-by: Edoardo Zoni <59625522+EZoni@users.noreply.github.com> .clang-tidy .github/workflows/clang_tidy.yml .github/workflows/dependencies/clang15.sh multi_physics/QED/QED_table_generator/CMakeLists.txt multi_physics/QED/QED_table_generator/table_generator.cpp multi_physics/QED/QED_tests/CMakeLists.txt multi_physics/QED/QED_tests/test_picsar_algo.cpp multi_physics/QED/QED_tests/test_picsar_array.cpp multi_physics/QED/QED_tests/test_picsar_breit_wheeler_core.cpp multi_physics/QED/QED_tests/test_picsar_breit_wheeler_tables.cpp multi_physics/QED/QED_tests/test_picsar_breit_wheeler_tables_generator.cpp multi_physics/QED/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp multi_physics/QED/QED_tests/test_picsar_chi_functions.cpp multi_physics/QED/QED_tests/test_picsar_gamma_functions.cpp multi_physics/QED/QED_tests/test_picsar_phys_constants.cpp multi_physics/QED/QED_tests/test_picsar_quadrature.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_core.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_tables.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_tables_generator.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp multi_physics/QED/QED_tests/test_picsar_schwinger_engine_core.cpp multi_physics/QED/QED_tests/test_picsar_serialization.cpp multi_physics/QED/QED_tests/test_picsar_span.cpp multi_physics/QED/QED_tests/test_picsar_spec_functions.cpp multi_physics/QED/QED_tests/test_picsar_tables.cpp multi_physics/QED/QED_tests/test_picsar_units.cpp multi_physics/QED/QED_tests/test_picsar_vec_functions.cpp multi_physics/QED/README.md multi_physics/QED/include/picsar_qed/containers/picsar_array.hpp multi_physics/QED/include/picsar_qed/containers/picsar_span.hpp multi_physics/QED/include/picsar_qed/containers/picsar_tables.hpp multi_physics/QED/include/picsar_qed/math/cmath_overloads.hpp multi_physics/QED/include/picsar_qed/math/math_constants.h multi_physics/QED/include/picsar_qed/math/quadrature.hpp multi_physics/QED/include/picsar_qed/math/special_functions.hpp multi_physics/QED/include/picsar_qed/math/vec_functions.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_core.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp multi_physics/QED/include/picsar_qed/physics/chi_functions.hpp multi_physics/QED/include/picsar_qed/physics/gamma_functions.hpp multi_physics/QED/include/picsar_qed/physics/phys_constants.h multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_core.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_detail.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_generator_detail.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp multi_physics/QED/include/picsar_qed/physics/schwinger/schwinger_pair_engine_core.hpp multi_physics/QED/include/picsar_qed/physics/unit_conversion.hpp multi_physics/QED/include/picsar_qed/qed_commons.h multi_physics/QED/include/picsar_qed/utils/picsar_algo.hpp multi_physics/QED/include/picsar_qed/utils/progress_bar.hpp multi_physics/QED/include/picsar_qed/utils/serialization.hpp multi_physics/QED/kokkos_example/kokkos_example_breit_wheeler.cpp multi_physics/QED/kokkos_example/kokkos_example_commons.hpp multi_physics/QED/kokkos_example/kokkos_example_quantum_synchrotron.cpp multi_physics/QED/python_bindings/CMakeLists.txt multi_physics/QED/python_bindings/pxr_qed.cpp multi_physics/QED/test_gpu/test_breit_wheeler.cu multi_physics/QED/test_gpu/test_quantum_sync.cu multi_physics/QED/test_gpu/test_schwinger.cu commit 6b46dbe083daf30286631c82818d4285c2676371 Author: Axel Huebl Date: Fri Aug 30 00:41:39 2024 -0700 CI: Update macOS Runner (Latest) (#54) * CI: Update macOS Runner (Latest) The old `macos-11` image is now removed. Update to running release `macos-latest`. * `test_picsar_tables.cpp`: Bump Tolerance 2x * `test_picsar_tables.cpp`: Bump Tolerance 5x * `test_picsar_tables.cpp`: Bump Tolerance 10x * `test_picsar_tables.cpp`: Bump Tolerance 20x * `test_picsar_tables.cpp`: Bump Tolerance 50x * `test_picsar_tables.cpp`: Bump Tolerance 100x * `test_picsar_tables.cpp`: Bump Tolerance 200x * `test_picsar_tables.cpp`: Bump Tolerance 500x * `test_picsar_tables.cpp`: Bump Tolerance 1000x * Reset Tolerance * `linear_function`: Add Tolerance .github/workflows/macos.yml multi_physics/QED/QED_tests/test_picsar_tables.cpp commit 44a2dfdf0f8cae93f12328664e055703989e7185 Author: Axel Huebl Date: Mon Aug 19 12:44:14 2024 -0700 Fix SYCL Include Name (#53) * Fix SYCL Include Name Evolved from `` to ``. * SYCL Update Namespaces too modernize multi_physics/QED/CMakeLists.txt multi_physics/QED/include/picsar_qed/math/cmath_overloads.hpp commit aa54e985398c1d575abc7e6737cdbc660a13765f Author: Luca Fedeli Date: Mon Jul 24 16:54:24 2023 +0200 Update Kokkos version in kokkos example (#51) multi_physics/QED/kokkos_example/CMakeLists.txt commit 1903ecfff51a31a321d39790af90d8520c10537e Author: Axel Huebl Date: Mon Jan 9 12:19:26 2023 +0100 Remove LGTM (#50) The repo already has CodeQL, which is the new LGTM product. .lgtm.yml commit 006f65f332681f13de47c16fbd41c11f1e346764 Author: Luca Fedeli Date: Fri Dec 9 02:17:51 2022 +0100 fix 3 typos (#48) multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 9347fa048362d098239337827209a949a78fef32 Author: Axel Huebl Date: Thu Dec 8 17:11:58 2022 -0800 CI: Fix Homebrew (macOS) (#49) Unbreak brew. .github/workflows/dependencies/dependencies_mac.sh commit 4252e567089fce30d2a3a82d78998e8d3d8220c2 Author: Luca Fedeli Date: Mon Jun 27 19:02:08 2022 +0200 Add new table style for Quantum Synchrotron photon emission (#34) * initial work to add new table style * work in progress to add new table * continue work to add new tables * fix some bugs in the test * added more tests for generic_table * work in progress to add new table * add new tests * fixed bugs * add lower_bound + tests * using lower_bound instead of upper_bound in quantum synchrotron emission * refactoring * refactoring * fixed bug * fixed some bugs * fix race condition * updated comment * fixed warning * add comments * removed unused function * improved comments * add comments * add comments * modified comment * fix warning * remove unused variables * fix code smell * fixed bug * fixed typo in docstring * fixed bug in tests * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_detail.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_generator_detail.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/containers/picsar_tables.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_generator_detail.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_detail.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_detail.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * removed unnecessary cast * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_detail.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * add back static_cast and add comment * add Neil's suggestion * Update multi_physics/QED/include/picsar_qed/containers/picsar_tables.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * add Neil's suggestion * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * fix typo * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_detail.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * add comment * using set_all_vals * fixed bug * fix bug Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> multi_physics/QED/QED_tests/test_picsar_quantum_sync_tables.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_tables_generator.cpp multi_physics/QED/QED_tests/test_picsar_tables.cpp multi_physics/QED/include/picsar_qed/containers/picsar_tables.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_detail.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_generator_detail.hpp commit 2becfe0665590063fdfca10abaa05c4c1bd3ec22 Author: Axel Huebl Date: Wed May 18 18:51:31 2022 +0200 QED: Move README (md) (#44) Make the README a markdown file, so that GitHub can automatically render it. multi_physics/QED/README.md commit 6a6b5b91283137ae6d2cd05ad5ccbcf433aeaf30 Author: Luca Fedeli Date: Mon May 16 11:51:44 2022 +0200 Add example using Kokkos (#21) * initial work to build kokkos example * example datastructure * BW tables with Kokkos vector * add optical depth calculation * changed default size * added pair production * added pair production * fixed issue with single precision * fix typo * added ugly workaround to sync kokkos vector * implementing a significantly less ugly solution for kokkos vector sync * fix bug * fixed bug * fixed bug * use library function to calculate gamma * fix missing default template parameter * now checking also infs * fix missing sync * using unused variable * new strategy to write data in a table to mitigate continuous calls to sync in case Kokkos is used * modified random number choice * improved checks * improved random * fixed bugs * added new Kokkos-based quantum synchrotron test * moving common functions in one file * add timers * add plenty of comments * updated CI for linux * updated CI for mac * updated dependencies for mac * revert change to mac depdendencies * updated CI * fixed bug * reverted name change * fixed bug * changed names * try to fix issue with macos * try to fix issue with macos * remove extra-semi warning because it finds an extra semicolon inside Kokkos! * improved macos.yml * add missing env variable * Update multi_physics/QED/CMakeLists.txt Co-authored-by: Axel Huebl * now using details namespace * removing llvm from macos CI * install tar in macos.yml * use macos 11 * try fix for failing test * Revert "use macos 11" This reverts commit 37be034076555ebec5b9f587769418dadf2754d4. * remove PATH * fixed bug * try with llvm * fix security issue * remove compilation with openMP for macOS CI tests * Revert "fix security issue" This reverts commit 4bf7f46a167cfc9607709a25a09720620fe02e84. * set path in macos tests * update dependencies * try export PATH * fix security issue * add flags * update flags * remove some flags from CCFLAGS * disable Werror for macos.yml * re-enable Werror for macos.yml but disable unreachable code warning * update flags for macos * update flags * add verbose flag * add -Wno-error=unused-parameter in macos.yml * using macos 11 * remove Werror * removing llvm from dependecies for macos CI tests * removed test for macos * fix revert * add file back * removed Werror * remove dependency * apply Neil's suggestion to fix issue with progress bar, Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/CMakeLists.txt Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_breit_wheeler.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_quantum_synchrotron.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_commons.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * update to C++17 * correct comment * Update multi_physics/QED/kokkos_example/kokkos_example_breit_wheeler.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_commons.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_breit_wheeler.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_commons.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_quantum_synchrotron.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_commons.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_commons.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_quantum_synchrotron.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_commons.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_commons.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * implementing Neil's suggestion * improve comment of a function * Update multi_physics/QED/kokkos_example/kokkos_example_commons.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * eliminate wrong comment * simplify function using C++17 if constexpr * Update multi_physics/QED/kokkos_example/kokkos_example_quantum_synchrotron.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * using more descriptive name for a variable * Update multi_physics/QED/kokkos_example/kokkos_example_breit_wheeler.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * using more descriptive names for check and check_multi * making variable names more descriptive * Update multi_physics/QED/kokkos_example/kokkos_example_breit_wheeler.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/kokkos_example/kokkos_example_breit_wheeler.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * add constexpr to a const variable * try to fix issue * Revert "try to fix issue" This reverts commit 9fa5c608eb27a20d77ae944cf2a52750fc453efc. * try to fix issue * try llvm * try having openMP working * remove too severe warning Co-authored-by: Axel Huebl Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> .github/workflows/dependencies/dependencies_mac.sh .github/workflows/linux.yml .github/workflows/macos.yml multi_physics/QED/CMakeLists.txt multi_physics/QED/QED_tests/test_picsar_tables.cpp multi_physics/QED/include/picsar_qed/containers/picsar_tables.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp multi_physics/QED/include/picsar_qed/qed_commons.h multi_physics/QED/include/picsar_qed/utils/progress_bar.hpp multi_physics/QED/kokkos_example/CMakeLists.txt multi_physics/QED/kokkos_example/kokkos_example_breit_wheeler.cpp multi_physics/QED/kokkos_example/kokkos_example_commons.hpp multi_physics/QED/kokkos_example/kokkos_example_quantum_synchrotron.cpp commit 53195d0fac4defeeab3842163fca5183969cd943 Author: Axel Huebl Date: Mon May 9 17:51:12 2022 -0700 CI: Fix pybind11 pip install (#45) Fix the failing CI: ``` Collecting pybind11[global] Downloading pybind11-2.9.2-py2.py3-none-any.whl (213 kB) ERROR: Could not find a version that satisfies the requirement pybind11-global==2.9.2; extra == "global" (from pybind11[global]) (from versions: 2.6.0b1, 2.6.0rc1, 2.6.0rc2, 2.6.0rc3, 2.6.0, 2.6.1, 2.6.2, 2.7.0, 2.7.1, 2.8.0, 2.8.1, 2.9.0, 2.9.1) ERROR: No matching distribution found for pybind11-global==2.9.2; extra == "global" (from pybind11[global]) ``` .github/workflows/dependencies/dependencies.sh commit a621a5a41fb8f7dbb19e03ec8f75c50f3b26b546 Author: Axel Huebl Date: Wed Apr 20 17:48:52 2022 -0700 NCI: Fix Nearest Neighbor Interpolation (#39) Operator precedence causes the 2nd term for linear weighting to always be zero. src/filtering/nci_godfrey_corr.F90 commit 24676a2a9356640515fa11724c841d6762b2b9c3 Author: Axel Huebl Date: Wed Apr 20 00:27:02 2022 -0700 Fix: CUDA Compile QED Tables (#43) This fixed the following issue compiling WarpX on Perlmutter (NERSC): ``` ... /global/homes/a/ahuebl/src/warpx/build_pm/_deps/fetchedpicsar-src/multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp:86:25: error: 'isinf' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation 86 | if(isinf(f1) || isinf(cc)) | ~~~~~^~~~ ``` via `cmake -S . -B build_pm -DWarpX_QED_TABLE_GEN=ON`. Compilers / Dependencies: - GCC 11.2.0 - CUDA 11.5 / NVCC 11.5.119 - CMake 3.22.0 - Boost 1.78.0 multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit e7ef03b852b889d69cfaf3852ab1aa926d20fcb0 Author: Luca Fedeli Date: Thu Feb 24 15:53:34 2022 +0100 add santizers to CI tests (#41) .github/workflows/linux.yml .github/workflows/macos.yml commit c85314ddf3c833a21da380dd533a0d632e2ff649 Author: Luca Fedeli Date: Thu Feb 24 15:49:18 2022 +0100 fix bug (#42) multi_physics/QED/python_bindings/pxr_qed.cpp commit 7877075f43cfac29c78ade709144cc09aa46d269 Author: Luca Fedeli Date: Thu Feb 24 09:59:02 2022 +0100 fix bug (#40) multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables.hpp commit 543b9822ca2f78c5b63d62a77fdf0491af5dd12a Author: Luca Fedeli Date: Fri Feb 4 03:57:54 2022 +0100 Fix corner case in photon emission (using lower_bound) (#33) * add lower_bound + tests * using lower_bound instead of upper_bound in quantum synchrotron emission * Update multi_physics/QED/include/picsar_qed/utils/picsar_algo.hpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> multi_physics/QED/QED_tests/test_picsar_algo.cpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp multi_physics/QED/include/picsar_qed/qed_commons.h multi_physics/QED/include/picsar_qed/utils/picsar_algo.hpp commit 15651b072cd9a45a5a5061d8cf7b928d136e39f3 Author: Luca Fedeli Date: Tue Feb 1 08:55:14 2022 +0100 Use C++17 (#36) * use C++17 * clang was a bit pedantic but it was right... multi_physics/QED/CMakeLists.txt multi_physics/QED/python_bindings/pxr_qed.cpp commit 7b5449f92a4b30a095cc4a67f0a8b1fc69680e15 Author: Remi Lehe Date: Wed Dec 1 00:11:17 2021 -0800 Replace erroneous text on current deposition (#32) Doxygen/pages/latex_theory/Gather/Field_gather.tex commit 8ff12fbf118b9aba7cfe602cb1a5e6da32bf7eef Author: Luca Fedeli Date: Wed Nov 10 12:01:41 2021 +0100 Fix issues with fujitsu compiler (#29) * fix compilation issues * fix issue with mistmatch type more elegantly * added fujitsu compiler option * added comment * fix issues with OpenMP src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 commit eb55d45b00111c496a4808c3593c04f35195126b Author: Luca Fedeli Date: Wed Nov 10 11:31:18 2021 +0100 Add option to compile with the Fujitsu compiler for A64FX architecture (#28) * fix compilation issues * fix issue with mistmatch type more elegantly * added fujitsu compiler option * added comment Makefile commit 552c22eaa14f72b8333eb19115cc7d764623b451 Author: Luca Fedeli Date: Tue Nov 9 17:10:11 2021 +0100 fix compilation issues (#27) * fix compilation issues * fix issue with mistmatch type more elegantly src/field_solvers/Maxwell/yee_solver/yee.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit a78be127f66adc1558f527edc8964e37e3a055ff Author: Luca Fedeli Date: Tue Sep 14 12:20:22 2021 +0200 Documentation: fixed missing term in an expression (#26) * Documentation: fixed missing term in an expression (no consequences on the code) * correct typo Co-authored-by: Luca Fedeli multi_physics/QED/QED_tests/validation/validation.ipynb commit 7ec0d7b58e4ba8f721d985f4153100cb8d57d842 Author: Axel Huebl Date: Thu Sep 2 17:23:24 2021 -0700 PICSAR QED: Search Boost if Needed (#25) Instead of always searching for boost, we should only search for it when `PXRMP_QED_TABLEGEN` is set. This way, we avoid potentially failing a build if an incompatible boost library is present and picked up. Also, we do not accidentially pick up system dependencies in complex environments and package managers. multi_physics/QED/CMakeLists.txt commit c16b642e3dcf860480dd1dd21cefa3874f395773 Author: Luca Fedeli Date: Thu Apr 29 14:42:38 2021 +0200 fix missing default template parameter (#23) multi_physics/QED/include/picsar_qed/physics/gamma_functions.hpp commit 93dc4619028c960332467c9808a07e5574a82baf Author: Luca Fedeli Date: Tue Apr 27 15:48:36 2021 +0200 Add gamma functions (#22) * add gamma functions * removed unused variables * Update multi_physics/QED/python_bindings/demo_python_bindings.ipynb Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * made test shorter following Neil's suggestion Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> multi_physics/QED/QED_tests/CMakeLists.txt multi_physics/QED/QED_tests/test_picsar_gamma_functions.cpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_core.hpp multi_physics/QED/include/picsar_qed/physics/chi_functions.hpp multi_physics/QED/include/picsar_qed/physics/gamma_functions.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_core.hpp multi_physics/QED/python_bindings/demo_python_bindings.ipynb multi_physics/QED/python_bindings/pxr_qed.cpp commit 0b6b880ad8d7918e0e78a9895deb10b7a68b69d6 Author: Luca Fedeli Date: Wed Apr 21 11:59:04 2021 +0200 Add python bindings for QED library 🐍 (#20) * improve table_generator * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * move MAX_CMD_SIZE * add default values for optional parameters * check for duplicated arguments * add wrappers to stod and stoi to check if conversion succeeds * initial work to add python bindings to the library * progress with python bindings * added CMakeLists.txt for python bindings * Mark pure getters as const * further progress towards python bindings * completed python bindings for chi functions * added python bindings for schwinger pair production * added optical depths to python bindings * added lookup table parameters to python bindings * now table params have __repr__ method * added BW lookup tables to python bindings * added interp methods to python bindings * added BW optical depth evolution to python bindings * added optical depth evolution for QS in python bindings * added demo script for python bindings * removed binary file accidentally ended up in git * removed binary file accidentally ended up in git * install pybind11 in CI * fixed bug * added Breit-Wheeler pair production * removed trailing spaces * added QS photon emission to python bindings * updated demo script * updated structure * fixed compilation with units != SI * added plenty of comments * updated CI * fix CI * Update multi_physics/QED/python_bindings/CMakeLists.txt Co-authored-by: Axel Huebl * Update multi_physics/QED/python_bindings/CMakeLists.txt Co-authored-by: Axel Huebl * Update multi_physics/QED/python_bindings/CMakeLists.txt Co-authored-by: Axel Huebl * implement Axel's suggetion (can't do that on github) * use 2.6 instead of 2.6.0 as version * reduce version from 2.6 to 2.4! * use version 2.6 and try pybind11 installation with pip * using pybind11[global] * fixed installation directory * Update multi_physics/QED/python_bindings/pxr_qed.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/python_bindings/pxr_qed.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/python_bindings/pxr_qed.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/python_bindings/pxr_qed.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * fix bug concerning qs_photon_emission_lookup_table_params constructor in python bindings * add missing parameter * Update multi_physics/QED/python_bindings/pxr_qed.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/python_bindings/pxr_qed.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/python_bindings/pxr_qed.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> Co-authored-by: Axel Huebl .github/workflows/codeql-analysis.yml .github/workflows/dependencies/dependencies.sh .github/workflows/dependencies/dependencies_mac.sh multi_physics/QED/CMakeLists.txt multi_physics/QED/python_bindings/CMakeLists.txt multi_physics/QED/python_bindings/demo_python_bindings.ipynb multi_physics/QED/python_bindings/pxr_qed.cpp commit 3a948c4eb74b5355727b27eb0a7b2a215be69610 Author: Luca Fedeli Date: Mon Apr 19 10:46:47 2021 +0200 Mark pure getters as const (#19) multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 32622885cc5a36fc2834e6443cd040cf58087dc0 Author: Luca Fedeli Date: Thu Apr 15 15:05:57 2021 +0200 Improve table_generator (#18) * improve table_generator * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> * move MAX_CMD_SIZE * add default values for optional parameters * check for duplicated arguments * add wrappers to stod and stoi to check if conversion succeeds Co-authored-by: Neïl Zaim <49716072+NeilZaim@users.noreply.github.com> multi_physics/QED/QED_table_generator/CMakeLists.txt multi_physics/QED/QED_table_generator/table_generator.cpp multi_physics/QED/QED_table_generator/table_inspector.ipynb commit 348830b444c65ca305aa3f89cd72fef7c65abd7d Author: Axel Huebl Date: Wed Mar 31 12:56:44 2021 -0700 Silence CUDA Warning: Host Constant (#17) CUDA/NVCC is sometimes a bit pedantic when using constexpr in device code. Storing those in a temporary variable silences these warnings. Fix #16 multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_core.hpp commit b35f07243c51ac35d47857fe36f0aafb6b517955 Author: Luca Fedeli Date: Fri Feb 12 17:32:48 2021 +0100 fix misplaced using (#15) multi_physics/QED/QED_tests/test_picsar_serialization.cpp commit 0ea93e3f83e50b2264540f92b8d7a6a381155470 Author: Axel Huebl Date: Wed Feb 10 09:27:37 2021 -0800 DPCPP: Fix Warning (Double define) (#14) I saw a redefine warning in PICSAR with WarpX for the DPCPP work-around in CI: ``` /home/runner/work/WarpX/WarpX/build_sp/_deps/fetchedpicsar-src/multi_physics/QED/include/picsar_qed/qed_commons.h:134:13: warning: 'PXRMP_DPCPP_FIX' macro redefined [-Wmacro-redefined] #define PXRMP_DPCPP_FIX ^ :1:9: note: previous definition is here ^ ``` multi_physics/QED/include/picsar_qed/qed_commons.h commit 7ce1b321d9e047a238e56ee95507d36520a95b5b Author: Luca Fedeli Date: Fri Feb 5 18:16:18 2021 +0100 Improve PICSAR QED library structure and CMakeLists (#7) * improved CMakeLists * updated another CMakeLists * fixed minor issues * fixed issue * fixed bug * Update src/multi_physics/CMakeLists.txt Co-authored-by: Axel Huebl * Update src/multi_physics/QED_tests/CMakeLists.txt Co-authored-by: Axel Huebl * Update src/multi_physics/QED_tests/CMakeLists.txt Co-authored-by: Axel Huebl * Update src/multi_physics/QED/CMakeLists.txt Co-authored-by: Axel Huebl * Update src/multi_physics/QED/CMakeLists.txt Co-authored-by: Axel Huebl * Update src/multi_physics/QED_tests/CMakeLists.txt Co-authored-by: Axel Huebl * added minimum version * add HAS_BOOST flag * Update src/multi_physics/QED_tests/CMakeLists.txt Co-authored-by: Axel Huebl * add missing PRIVATE * Multi-Physics: Add CI * Boost: Try without math * macOS CI: Install Boost * CMake: Move QED target * Move QED Tests * Remove Wshadow warning * Boost: 1.66.0+ The header `boost/math/quadrature/tanh_sinh.hpp` was introduced in this release. * add ifdefs to remove openMP if needed * option to have boost without table generation support * enable warnings * remove warning in test * fixed warning * moved options to top CMakeLists.txt * Update src/multi_physics/CMakeLists.txt Co-authored-by: Axel Huebl * fixed CMakeLists for table_generator * fixed warning * now std:: math functions are used by default * fix issues related to double to float conversions * Do not include `math/` in -I * includes now use full path starting from root * large reorganization * updated automated tests * updated automated tests * removed line in dependencies_mac.sh * modified dependencies_mac.sh * modified dependencies_mac.sh * removed debug line * sycl fix (hopefully) * added fix for dpc++ * fixed bug * added comment * fixed bug * sycl fix * changed logic for FORCE_BOOST for special functions * updated README * updated gitignore * Update multi_physics/QED/QED_table_generator/CMakeLists.txt Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/CMakeLists.txt Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_table_generator/CMakeLists.txt Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/math/cmath_overloads.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/math/cmath_overloads.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/QED_tests/CMakeLists.txt Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/CMakeLists.txt Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * not using INTERNAL preprocessor variables anymore * try to add .lgtm.yml file * trying to add codeql-analysis.yml * improve codeql-analysis.yml * bugfixing in codeql-analysis.yml * analyze only C++ * do not run tests while doing code analysis * updated lgtm file * Update multi_physics/QED/include/picsar_qed/qed_commons.h Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update multi_physics/QED/include/picsar_qed/qed_commons.h Co-authored-by: Axel Huebl * Update multi_physics/QED/QED_table_generator/table_generator.cpp Co-authored-by: Axel Huebl * rearranged c++ stdlib includes * Update multi_physics/QED/include/picsar_qed/qed_commons.h Co-authored-by: Axel Huebl Co-authored-by: Axel Huebl Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> .github/workflows/codeql-analysis.yml .github/workflows/dependencies/dependencies.sh .github/workflows/dependencies/dependencies_mac.sh .github/workflows/linux.yml .github/workflows/macos.yml .gitignore .lgtm.yml multi_physics/QED/CMakeLists.txt multi_physics/QED/QED_table_generator/CMakeLists.txt multi_physics/QED/QED_table_generator/table_generator.cpp multi_physics/QED/QED_table_generator/table_inspector.ipynb multi_physics/QED/QED_tests/CMakeLists.txt multi_physics/QED/QED_tests/test_picsar_algo.cpp multi_physics/QED/QED_tests/test_picsar_array.cpp multi_physics/QED/QED_tests/test_picsar_breit_wheeler_core.cpp multi_physics/QED/QED_tests/test_picsar_breit_wheeler_tables.cpp multi_physics/QED/QED_tests/test_picsar_breit_wheeler_tables_generator.cpp multi_physics/QED/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp multi_physics/QED/QED_tests/test_picsar_chi_functions.cpp multi_physics/QED/QED_tests/test_picsar_cmath_overload.cpp multi_physics/QED/QED_tests/test_picsar_math_constants.cpp multi_physics/QED/QED_tests/test_picsar_phys_constants.cpp multi_physics/QED/QED_tests/test_picsar_quadrature.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_core.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_tables.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_tables_generator.cpp multi_physics/QED/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp multi_physics/QED/QED_tests/test_picsar_schwinger_engine_core.cpp multi_physics/QED/QED_tests/test_picsar_serialization.cpp multi_physics/QED/QED_tests/test_picsar_span.cpp multi_physics/QED/QED_tests/test_picsar_spec_functions.cpp multi_physics/QED/QED_tests/test_picsar_tables.cpp multi_physics/QED/QED_tests/test_picsar_units.cpp multi_physics/QED/QED_tests/test_picsar_vec_functions.cpp multi_physics/QED/QED_tests/test_progress_bar.cpp multi_physics/QED/QED_tests/validation/validation.ipynb multi_physics/QED/README multi_physics/QED/include/picsar_qed/containers/picsar_array.hpp multi_physics/QED/include/picsar_qed/containers/picsar_span.hpp multi_physics/QED/include/picsar_qed/containers/picsar_tables.hpp multi_physics/QED/include/picsar_qed/math/cmath_overloads.hpp multi_physics/QED/include/picsar_qed/math/math_constants.h multi_physics/QED/include/picsar_qed/math/quadrature.hpp multi_physics/QED/include/picsar_qed/math/special_functions.hpp multi_physics/QED/include/picsar_qed/math/vec_functions.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_core.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp multi_physics/QED/include/picsar_qed/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp multi_physics/QED/include/picsar_qed/physics/chi_functions.hpp multi_physics/QED/include/picsar_qed/physics/phys_constants.h multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_core.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp multi_physics/QED/include/picsar_qed/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp multi_physics/QED/include/picsar_qed/physics/schwinger/schwinger_pair_engine_core.hpp multi_physics/QED/include/picsar_qed/physics/unit_conversion.hpp multi_physics/QED/include/picsar_qed/qed_commons.h multi_physics/QED/include/picsar_qed/utils/picsar_algo.hpp multi_physics/QED/include/picsar_qed/utils/progress_bar.hpp multi_physics/QED/include/picsar_qed/utils/serialization.hpp multi_physics/QED/test_gpu/test_breit_wheeler.cu multi_physics/QED/test_gpu/test_quantum_sync.cu multi_physics/QED/test_gpu/test_schwinger.cu shippable.yml src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_table_generator/CMakeLists.txt src/multi_physics/QED_table_generator/README src/multi_physics/QED_tests/CMakeLists.txt commit 024db7c01daf820ae321c3473f2dd5ec73476946 Author: Luca Fedeli Date: Thu Jan 7 17:50:50 2021 +0100 fix boost assert (#13) src/multi_physics/QED/src/math/quadrature.hpp commit 47c269eb242815f9382da61a110c0c8f12be2d08 Author: Luca Fedeli Date: Thu Nov 26 12:01:49 2020 +0100 fix issues related to double to float conversions (#11) src/multi_physics/QED/src/math/cmath_overloads.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_picsar_cmath_overload.cpp commit 951cd961ee146ace1a06818a33c0ec66d1595d16 Author: Luca Fedeli Date: Wed Nov 25 15:22:40 2020 +0100 Truly fix cross execution errors (#10) * make empty constructors constexpr * change is_POD to is_trivially_copyable, which is more appropriate * eliminate double semicolon src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/utils/serialization.hpp commit da00701cf1d474c2fb16692d43c233c68a35e72d Author: Luca Fedeli Date: Tue Nov 24 17:17:13 2020 +0100 some empty constructors are now compiled as __host__ __device__ on GPU (#9) src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit b456b971796a07229f4968a5baacf83dce235b46 Author: Luca Fedeli Date: Tue Nov 3 18:19:57 2020 +0100 Add floor to cmath overloads (#8) * add floor to cmath overloads * Update src/multi_physics/QED_tests/test_picsar_cmath_overload.cpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> * Update src/multi_physics/QED/src/math/cmath_overloads.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/math/cmath_overloads.hpp src/multi_physics/QED_tests/test_picsar_cmath_overload.cpp commit d60c72ff5aa15dbd7e225654964b6c4fb10d52e2 Author: Luca Fedeli Date: Fri Oct 30 09:25:33 2020 +0100 fix undefined behaviour (#6) src/multi_physics/QED/src/utils/serialization.hpp commit 94e61726e04b5ad04acddef9a40acb5b74c51d3d Author: Luca Fedeli Date: Wed Oct 28 10:29:53 2020 +0100 fix misprint in a formula (#5) src/multi_physics/QED_tests/validation/validation.ipynb commit 70d0d45837d2803139c093ba3f3390acfc3110a6 Merge: 2ffe4ac1 0446788c Author: NeilZaim <49716072+NeilZaim@users.noreply.github.com> Date: Tue Oct 20 15:56:24 2020 +0200 Merge pull request #4 from lucafedeli88/fix_warnings [mini-PR] fix some warnings related to unnecessary ";" commit 0446788c68c4936a4ceb28c0d925bd584d8d94b9 Author: Luca Fedeli Date: Fri Oct 16 14:53:41 2020 +0200 removed warnings src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 2ffe4ac15f6a1da20a2e8e5614371aef157de3c2 Merge: 9924a345 c8556585 Author: Luca Fedeli Date: Thu Oct 15 02:03:30 2020 +0200 Merge pull request #3 from lucafedeli88/fix_warnings Fix some warnings commit c8556585173e458eca5b43eb60b4ba86f09dbfe6 Author: Luca Fedeli Date: Wed Oct 14 17:54:12 2020 +0200 fix some warnings src/multi_physics/QED/src/physics/unit_conversion.hpp commit 9924a34515cb46a3be5ccb6cfcd939abde272c6e Merge: 82bc47e7 8de01dbb Author: Luca Fedeli Date: Mon Sep 21 11:21:18 2020 +0200 Merge pull request #2 from lucafedeli88/improved Improved version of the QED library commit 8de01dbbf6f27ebd4b75203d7ed2b2bcdb54b562 Author: Luca Fedeli Date: Mon Sep 21 03:49:55 2020 +0200 make calculation of tabulated function more robust src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp commit 6fa22cca8fe263b9245661caeb5d2178960b28bb Author: Luca Fedeli Date: Mon Sep 21 03:34:36 2020 +0200 make calculation of tabulated function more robust src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp commit 05b06065c83b312fc125193694ece55e0d02ef9d Author: Luca Fedeli Date: Mon Sep 21 03:17:23 2020 +0200 make calculation of tabulated function more robust src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp commit bedacccdd3daa3e8cf28cc083be9cc52d3151024 Author: Luca Fedeli Date: Sun Sep 20 11:35:38 2020 +0200 improved serialization src/multi_physics/QED/src/utils/serialization.hpp commit acc3b5a4b46b3b29f565b2a8eade0c2ad29b82c1 Author: Luca Fedeli Date: Sat Sep 19 12:47:15 2020 +0200 simplified CMakeLists src/multi_physics/QED/CMakeLists.txt commit 9beac0587f30efc5e9c5fcacd96d7e95c8cac778 Author: Luca Fedeli Date: Sat Sep 19 12:37:15 2020 +0200 make picsar tests compilable with boost 1.66 src/multi_physics/CMakeLists.txt commit 16e55d26435902234adda8f28a0348afb94f5a80 Author: Luca Fedeli Date: Sat Sep 19 12:35:11 2020 +0200 fixed bug related to how BOOST_ENABLE_ASSERT_HANDLER was used src/multi_physics/QED/src/math/quadrature.hpp commit c345a11460cd789ceae571d78ee10f504e04b074 Author: Luca Fedeli Date: Wed Aug 26 15:48:21 2020 +0200 simplified picsar_array src/multi_physics/QED/src/containers/picsar_array.hpp commit b04a925609839fb89a2b284e2fd8e5f1854c2959 Author: Luca Fedeli Date: Mon Jul 27 02:52:48 2020 +0200 changed behavior for very low chi_photon in synchrotron emission src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 5b1ab6dbc07ae74e2b81c8382a209b2a59858bc7 Author: Luca Fedeli Date: Thu Jul 23 17:06:33 2020 +0200 fixed all the warnings in tests src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp src/multi_physics/QED_tests/test_picsar_math_constants.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit c30985cad90ccfdab968f786cdd0351f331b49b3 Author: Luca Fedeli Date: Thu Jul 23 02:35:22 2020 +0200 fixed minor bug concerning output message src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp commit d43606e89013e403c739f20e8fcee1376d575e11 Author: Luca Fedeli Date: Wed Jul 22 18:42:13 2020 +0200 replaced size_t with int src/multi_physics/QED/src/containers/picsar_array.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED/src/utils/picsar_algo.hpp commit e1e23e5fa1dc9566e678e01ddb104771840205db Author: Luca Fedeli Date: Wed Jul 22 12:39:27 2020 +0200 added inline specifiers src/multi_physics/QED/src/math/quadrature.hpp src/multi_physics/QED/src/math/special_functions.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/utils/progress_bar.hpp src/multi_physics/QED/src/utils/serialization.hpp commit b4421c9da6b8f85033048439449c431ee086899f Author: Luca Fedeli Date: Wed Jul 22 12:10:39 2020 +0200 fixed comment src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp commit a5a13f79fa3234b7ad27570963e853bef0174bfb Author: Luca Fedeli Date: Wed Jul 22 10:41:25 2020 +0200 added some const src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit b78df277cf62565a309d5ef04b186e82e97cec71 Author: Luca Fedeli Date: Wed Jul 22 10:33:02 2020 +0200 two methods are now marked as const src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 58adeb1071ab67d5f483385fb750c58364b6f992 Author: Luca Fedeli Date: Wed Jul 22 04:14:25 2020 +0200 fixed ambiguous constructor src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp commit 838c9ccf948d3939389d4c055474eca54d64f223 Author: Luca Fedeli Date: Wed Jul 22 04:01:21 2020 +0200 table_view is not constant anymore (although it still points to constant data) src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 6325f46ba55a2efac421964a5022ae433df92331 Author: Luca Fedeli Date: Wed Jul 22 03:25:56 2020 +0200 table_view is not constant anymore (although it still points to constant data) src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit af3d925c160038de6456322b75112de0a5df8a75 Author: Luca Fedeli Date: Wed Jul 22 03:08:28 2020 +0200 added empty constructors src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 4cce33dc345bf2b0906dd68a04378cf4cf3ddbce Author: Luca Fedeli Date: Tue Jul 21 15:39:55 2020 +0200 Update src/multi_physics/test_gpu/test_breit_wheeler.cu Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/test_gpu/test_breit_wheeler.cu commit d8ef106e53e59211c0a18056e7a3cc3d8b4578e9 Author: Luca Fedeli Date: Tue Jul 21 15:39:45 2020 +0200 Update src/multi_physics/test_gpu/test_breit_wheeler.cu Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/test_gpu/test_breit_wheeler.cu commit c50969ecf228df7b4951a7852eaf975d70bb8601 Author: Luca Fedeli Date: Tue Jul 21 15:39:34 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit 9999a8be66d310372ee9e19e0168f9e1429afa9b Author: Luca Fedeli Date: Tue Jul 21 15:39:11 2020 +0200 Update src/multi_physics/test_gpu/test_quantum_sync.cu Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/test_gpu/test_quantum_sync.cu commit b99e862dabad82b20d951bdaaf4d2b548b1c19e0 Author: Luca Fedeli Date: Tue Jul 21 15:39:02 2020 +0200 Update src/multi_physics/test_gpu/test_schwinger.cu Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/test_gpu/test_schwinger.cu commit df19bc22a3f437e2e9d1f56d52c381a608acf6ea Author: Luca Fedeli Date: Tue Jul 21 15:38:51 2020 +0200 Update src/multi_physics/test_gpu/test_quantum_sync.cu Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/test_gpu/test_quantum_sync.cu commit 156b0b2e20dc41e6c012834b5687335e7ac5b90b Author: Luca Fedeli Date: Tue Jul 21 10:31:03 2020 +0200 updated README src/multi_physics/README commit c2539a5a636f54954623995cd65fa48fde648179 Author: Luca Fedeli Date: Tue Jul 21 10:27:34 2020 +0200 Update src/multi_physics/README Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/README commit 8b005876c1c90ab61cd7410f4ad2a00973d4c3c2 Author: Luca Fedeli Date: Tue Jul 21 10:25:53 2020 +0200 Update src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp commit d355eb5979438586216c57393ef820160e6c0214 Author: Luca Fedeli Date: Tue Jul 21 10:20:04 2020 +0200 Update src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp commit 9aa8371d10dbe1b660485322c91d75e062d2d5e5 Author: Luca Fedeli Date: Tue Jul 21 10:19:48 2020 +0200 Update src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp commit 1c7f08d861559faeefeb1044c4cead0bcfbca1d9 Author: Luca Fedeli Date: Tue Jul 21 10:19:39 2020 +0200 Update src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp commit 4bb6bff87f55bcf1c89a57e75948b8efa55de7f9 Author: Luca Fedeli Date: Mon Jul 20 14:53:29 2020 +0200 fixed numerical issue with integral src/multi_physics/QED/src/math/quadrature.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit fd3900f8bdbab3a7ed7bb9b456727aafb56c41ae Author: Luca Fedeli Date: Mon Jul 20 11:57:55 2020 +0200 fixed comment src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit b4924d53cd78ee1d90e0fbd7e0c5b766ae0a7cc5 Author: Luca Fedeli Date: Mon Jul 20 10:43:42 2020 +0200 corrected misprints src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp commit 62dc10ffd50f1dfabee0cc05f81ffcb128a11845 Author: Luca Fedeli Date: Mon Jul 20 10:19:32 2020 +0200 improved comments src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit a668d75ad5e62a6914c696382e22ca5000356d8c Author: Luca Fedeli Date: Mon Jul 20 10:17:07 2020 +0200 corrected comment src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit 371d64c9c24082918d61f1494a0218dc045c299a Author: Luca Fedeli Date: Fri Jul 17 17:07:14 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit 02dd9a5a85909f0d60ca6f4749c38c993c2b8965 Author: Luca Fedeli Date: Fri Jul 17 16:30:25 2020 +0200 Update src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp commit ea8211792f00e8f6586e62c4ce998dea2e241044 Author: Luca Fedeli Date: Fri Jul 17 16:30:13 2020 +0200 Update src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp commit 05aef74c1ae3eeac370ea2ec8ce0cd16f8ba932a Author: Luca Fedeli Date: Fri Jul 17 16:29:51 2020 +0200 Update src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp commit 0bd74e4d976138b162860813e46c0afe6aae9cba Author: Luca Fedeli Date: Fri Jul 17 16:29:30 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp commit bde25c656a28ced474d01b590a48b42fac3f3d37 Author: Luca Fedeli Date: Fri Jul 17 16:29:22 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp commit 4e9f761e15a24f0dd9ef00e32317276888689e72 Author: Luca Fedeli Date: Fri Jul 17 16:29:13 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp commit 0a24e764aba00bae4b1e5f99d24bfb7c0a59eccd Author: Luca Fedeli Date: Fri Jul 17 16:28:09 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit db74b842ecc3cd15150472f3611ed5043e6c4b76 Author: Luca Fedeli Date: Fri Jul 17 16:28:00 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit a93dccc295461cbc2a6adb5942f45b6a100f17da Author: Luca Fedeli Date: Fri Jul 17 16:27:49 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit fb045de3e85c468d7384efa377186e29ebab92cf Author: Luca Fedeli Date: Fri Jul 17 16:27:10 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 5d5200d16a96150209e4595a8130762fb3a7538e Author: Luca Fedeli Date: Fri Jul 17 16:16:26 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit b28113ddd9a02199652104281e1096282cd2ed6a Author: Luca Fedeli Date: Fri Jul 17 16:15:53 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 3724a7c119ce2250062053524a1bd761902a4042 Author: Luca Fedeli Date: Fri Jul 17 16:15:39 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit f2d79370dff396bf4020f58b8a2f5f2bbf0fd4aa Author: Luca Fedeli Date: Fri Jul 17 16:15:27 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 0c9206194d31fd043932bd03fe407f10ed3f6523 Author: Luca Fedeli Date: Fri Jul 17 16:15:06 2020 +0200 Update src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 91b01fd45287116d7b255d6cef04572378ad8dc7 Merge: 0556b74d 87387a8c Author: Luca Fedeli Date: Fri Jul 17 11:48:17 2020 +0200 Merge branch 'improved' of github.com:lucafedeli88/picsar into improved commit 0556b74d119367b93d72799e5085e63967676d51 Author: Luca Fedeli Date: Fri Jul 17 11:47:44 2020 +0200 removed line which caused bugs on some systems src/multi_physics/QED_tests/test_picsar_algo.cpp src/multi_physics/QED_tests/test_picsar_array.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables_generator.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp src/multi_physics/QED_tests/test_picsar_chi_functions.cpp src/multi_physics/QED_tests/test_picsar_cmath_overload.cpp src/multi_physics/QED_tests/test_picsar_math_constants.cpp src/multi_physics/QED_tests/test_picsar_phys_constants.cpp src/multi_physics/QED_tests/test_picsar_quadrature.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables_generator.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp src/multi_physics/QED_tests/test_picsar_serialization.cpp src/multi_physics/QED_tests/test_picsar_span.cpp src/multi_physics/QED_tests/test_picsar_spec_functions.cpp src/multi_physics/QED_tests/test_picsar_tables.cpp src/multi_physics/QED_tests/test_picsar_units.cpp src/multi_physics/QED_tests/test_picsar_vec_functions.cpp src/multi_physics/QED_tests/test_progress_bar.cpp commit 87387a8cf2551529a5930e2cbeb196be5b64ec1b Author: lucafedeli88 Date: Fri Jul 17 10:19:56 2020 +0200 recovered from stash src/multi_physics/test_gpu/test_breit_wheeler.cu commit 7fc530d40ac17eea59f2673d5a7e3fd3fc0109da Merge: 75b575b3 8d4d2bac Author: lucafedeli88 Date: Fri Jul 17 09:54:11 2020 +0200 Merge branch 'improved' of github.com:lucafedeli88/picsar into improved commit 75b575b36cebec0f03bc2a51a574062bd7f1f867 Author: lucafedeli88 Date: Fri Jul 17 09:53:25 2020 +0200 added new test src/multi_physics/test_gpu/test_quantum_sync.cu commit 8d4d2bac5a1bd8a21944d4657dc8e27ebcccd590 Author: Luca Fedeli Date: Thu Jul 16 12:50:41 2020 +0200 cleaning and improving table inspector src/multi_physics/QED_table_generator/table_generator.cpp src/multi_physics/QED_table_generator/table_inspector.ipynb src/multi_physics/test_gpu/test_breit_wheeler.cu commit 748ca11cdc5c439d68cbc496731c5fac2ac5464d Author: Luca Fedeli Date: Thu Jul 16 11:03:21 2020 +0200 fixed bug in test src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables_generator.cpp commit adef08f712b0f40dfa046f14894df6d7b33aa5ab Author: Luca Fedeli Date: Thu Jul 16 03:54:22 2020 +0200 fixed some bugs in tests src/multi_physics/QED_tests/test_picsar_quantum_sync_tables_generator.cpp commit 6500902b90aa0194795ffd433264c4c7de65c2f0 Author: Luca Fedeli Date: Thu Jul 16 03:48:45 2020 +0200 fixed table generator and updated table inspector src/multi_physics/QED_table_generator/table_generator.cpp src/multi_physics/QED_table_generator/table_inspector.ipynb commit 0df6b419d4b1ad87c44287d28d5ddc5131f55583 Author: Luca Fedeli Date: Thu Jul 16 02:19:57 2020 +0200 changed strategy to deal with probability in BW table src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables_generator.cpp commit cdc4e4cdf404bbb2ab0b808a299ec711616eecbd Author: Luca Fedeli Date: Wed Jul 15 19:06:39 2020 +0200 correct mistake (but tests still not passing) src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables_generator.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables_generator.cpp commit e6ef74a6b54897e6714be32b5449dfe57af8fec0 Author: Luca Fedeli Date: Wed Jul 15 19:01:15 2020 +0200 bugfixing src/multi_physics/QED_table_generator/table_generator.cpp commit c08d6f6ba482aa14b7abc84612e2367d43441d87 Author: Luca Fedeli Date: Wed Jul 15 18:52:38 2020 +0200 added tests (not passing) src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables_generator.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables_generator.cpp commit d36740d3a36b7d937595f8f7fb229e345e601bc4 Author: Luca Fedeli Date: Wed Jul 15 16:29:28 2020 +0200 bugfixing src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp commit 0710e2deaac2d41d77bdf6a511afe034bb6afdb0 Author: Luca Fedeli Date: Wed Jul 15 15:47:13 2020 +0200 fixed exceptions src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED_table_generator/table_generator.cpp commit e0736d607f2fd8b998af993d5f0cde200fe2eae9 Author: Luca Fedeli Date: Wed Jul 15 15:00:00 2020 +0200 changed way of exporting all coordinates src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_table_generator/table_generator.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp commit 6c1c4fa5b000e10438c488a2a03c0c992bdf8823 Author: Luca Fedeli Date: Wed Jul 15 12:43:29 2020 +0200 added checks and improved tests src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables_generator.cpp commit 1e5e07bcee67aefd937d7dc5fd0a033dbe9338b0 Author: Luca Fedeli Date: Wed Jul 15 03:16:43 2020 +0200 added two tests and cleaning src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED_table_generator/CMakeLists.txt src/multi_physics/QED_table_generator/README src/multi_physics/QED_table_generator/table_inspector.ipynb src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables_generator.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables_generator.cpp commit 8414d5ea0b3465ed43632e9a36db97e78dfe1f66 Author: Luca Fedeli Date: Tue Jul 14 18:46:51 2020 +0200 improved description src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp commit 03cbccf8029277584b603bb0c0280700e5252818 Author: Luca Fedeli Date: Tue Jul 14 18:46:38 2020 +0200 fixed bug and polished tests src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp commit b6dbb40c6051db3606325385dbd2bf2244ff37a2 Author: Luca Fedeli Date: Tue Jul 14 17:00:02 2020 +0200 polished tests src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp commit 8e47e6c7fd81de7b20f87af378164dbe9b84383a Author: Luca Fedeli Date: Tue Jul 14 16:25:15 2020 +0200 added check for data out of table and polished tests src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp commit 8e30ad236d010c370c50fce620628cf8f5948ecf Author: Luca Fedeli Date: Tue Jul 14 15:05:21 2020 +0200 made table generation much faster src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit 743c984e5c4982ae27893af1e0f762d1f60dac43 Author: Luca Fedeli Date: Tue Jul 14 14:21:24 2020 +0200 optimized table generation src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp commit 80fed7272358f532f32a109a9363e083a834f430 Author: Luca Fedeli Date: Tue Jul 14 12:35:44 2020 +0200 Compiling with OpenMP is now an option src/multi_physics/QED_table_generator/CMakeLists.txt src/multi_physics/QED_table_generator/README commit f3aab2902f0c8d0d2cace461ab0a0e342e093cc2 Author: Luca Fedeli Date: Tue Jul 14 03:56:55 2020 +0200 initial work to have a table inspector src/multi_physics/QED_table_generator/table_inspector.ipynb commit 947c320cbb3489c8bda7124be00be992595ca937 Author: Luca Fedeli Date: Tue Jul 14 03:38:02 2020 +0200 bugfixing src/multi_physics/QED_table_generator/table_generator.cpp commit bad2ef22b25babb84146772782c5203c00f4e873 Author: Luca Fedeli Date: Tue Jul 14 02:35:59 2020 +0200 set schedule to dynamic for openmp 2D table generation src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp commit 24af463538417371de44eca217d04ab75a6bfc14 Author: Luca Fedeli Date: Tue Jul 14 02:24:55 2020 +0200 added option to compile with march=native src/multi_physics/QED_table_generator/CMakeLists.txt src/multi_physics/QED_table_generator/README src/multi_physics/README commit e512368808006c623aa61daee588b2830adb2cb0 Author: Luca Fedeli Date: Mon Jul 13 17:23:17 2020 +0200 put back function deleted by mistake src/multi_physics/QED_tests/validation/validation.ipynb commit 3e25f4ab0214dce44c8ffb893687ff8c76bf2600 Author: Luca Fedeli Date: Mon Jul 13 17:20:08 2020 +0200 removed useless functions src/multi_physics/QED_tests/validation/validation.ipynb commit 1422e1d0cd5e8049dd5da521bfdd42f355131457 Author: Luca Fedeli Date: Mon Jul 13 17:17:04 2020 +0200 removed useless functions src/multi_physics/QED_tests/validation/validation.ipynb commit e556d4441190080fa35f1e1f0c17c7add08dc1f0 Author: Luca Fedeli Date: Mon Jul 13 17:05:14 2020 +0200 bugfixing src/multi_physics/QED_tests/validation/validation.ipynb commit 85d7e9c856c5fcf93dd7aafa21a4293a50a9f8f3 Author: Luca Fedeli Date: Mon Jul 13 16:47:22 2020 +0200 fixed bug src/multi_physics/QED_tests/validation/validation.ipynb commit de0acd2b2f79f4ec3c42c75998382a49bc672151 Author: Luca Fedeli Date: Mon Jul 13 15:40:08 2020 +0200 fixed bug src/multi_physics/QED_tests/validation/validation.ipynb commit 18968d6d359be85867a53dbbfa471d48e24ce794 Author: Luca Fedeli Date: Mon Jul 13 15:39:02 2020 +0200 fixed bug src/multi_physics/QED_tests/validation/validation.ipynb commit 1a2642cd937f92ec4f93bff88189244fbadf9cf1 Author: Luca Fedeli Date: Mon Jul 13 15:16:12 2020 +0200 now tables store internally m_dx and m_dy src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit a1c4d5f83add872bb2c69c18adb1fe2951fc022d Author: Luca Fedeli Date: Mon Jul 13 14:23:48 2020 +0200 renamed variable for better clarity src/multi_physics/QED/src/math/vec_functions.hpp src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED_tests/test_picsar_vec_functions.cpp commit 1c9272c96e2d75bb68c3bbc583e639042f02030b Author: Luca Fedeli Date: Mon Jul 13 14:16:25 2020 +0200 renamed a variable src/multi_physics/QED/src/utils/progress_bar.hpp commit 89910f5479d0d0f99b91b1ff50758ea2a7f4664c Author: Luca Fedeli Date: Mon Jul 13 14:12:35 2020 +0200 Update src/multi_physics/QED/src/utils/picsar_algo.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/utils/picsar_algo.hpp commit 441cfc5a7071061d34a158544694f1efd46b51b2 Author: Luca Fedeli Date: Mon Jul 13 14:12:18 2020 +0200 Update src/multi_physics/QED/src/utils/picsar_algo.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/utils/picsar_algo.hpp commit 1bdc7e994f99a33977c02215f83f4bc339611c3c Author: Luca Fedeli Date: Mon Jul 13 14:11:50 2020 +0200 Update src/multi_physics/QED/src/math/quadrature.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/math/quadrature.hpp commit 6e23663564a6f1bab90c67f17d3de205dde08188 Author: Luca Fedeli Date: Mon Jul 13 14:11:33 2020 +0200 Update src/multi_physics/QED/src/containers/picsar_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/containers/picsar_tables.hpp commit 3f297534d2fa2a65242be5058c3d775833097bba Author: Luca Fedeli Date: Mon Jul 13 14:11:11 2020 +0200 Update src/multi_physics/QED/src/containers/picsar_tables.hpp Co-authored-by: NeilZaim <49716072+NeilZaim@users.noreply.github.com> src/multi_physics/QED/src/containers/picsar_tables.hpp commit f5beafcd35a7072de6b3d9f44b1e9cd8165d5525 Merge: f77da56c 07229959 Author: Luca Fedeli Date: Thu Jul 9 13:35:42 2020 +0200 Merge branch 'improved' of github.com:lucafedeli88/picsar into improved commit f77da56c496ae1b4cbf6cb096e0f4c9ec5212007 Author: Luca Fedeli Date: Thu Jul 9 13:35:23 2020 +0200 bugfixing src/multi_physics/QED_table_generator/table_generator.cpp commit 07229959f82e57367cef42710d28d457a01bbbaf Author: lucafedeli88 Date: Thu Jul 9 04:04:27 2020 +0200 improved test src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/test_gpu/test_breit_wheeler.cu commit a4ed40a6b3cb0f3db12b532d1453b72f7ab12869 Author: lucafedeli88 Date: Wed Jul 8 18:56:19 2020 +0200 small correction src/multi_physics/QED/src/containers/picsar_tables.hpp commit 6a6b549370d8818776aca11f050fe10b421930cf Author: lucafedeli88 Date: Wed Jul 8 18:52:25 2020 +0200 work to have also tests on GPU src/multi_physics/README src/multi_physics/test_gpu/test_breit_wheeler.cu src/multi_physics/test_gpu/test_schwinger.cu commit 643a802e98f200c74f040e724e6223c8c23e055b Author: lucafedeli88 Date: Wed Jul 8 18:35:53 2020 +0200 cleaning src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp commit 265334fea0f30515d8212c875c45ddf9789c2b8a Author: Luca Fedeli Date: Wed Jul 8 15:37:34 2020 +0200 modified table generator and added CMakeLists.txt src/multi_physics/QED/src/containers/picsar_span.hpp src/multi_physics/QED_table_generator/CMakeLists.txt src/multi_physics/QED_table_generator/table_generator.cpp commit d5dc36a877b3d0833adef4e89e4ace6d4b39d17b Author: Luca Fedeli Date: Wed Jul 8 12:21:00 2020 +0200 bigfixing src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp src/multi_physics/QED_tests/test_picsar_algo.cpp commit 97a5bc7de7dace423e9622ae9d98a1988df6c204 Author: Luca Fedeli Date: Wed Jul 8 11:39:07 2020 +0200 added some tests and some comments src/multi_physics/QED_tests/test_picsar_algo.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp src/multi_physics/QED_tests/test_picsar_cmath_overload.cpp commit 44eba32d68e91ad918fa4075af2d8462d0d81ab3 Author: Luca Fedeli Date: Wed Jul 8 11:24:47 2020 +0200 added comments src/multi_physics/QED_tests/test_picsar_serialization.cpp commit 4f6fd9da2df682469a439882baa6d50a9a0959d1 Author: Luca Fedeli Date: Wed Jul 8 11:23:59 2020 +0200 added comments and split a file into two src/multi_physics/QED_tests/test_picsar_math_constants.cpp src/multi_physics/QED_tests/test_picsar_phys_constants.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp src/multi_physics/QED_tests/test_picsar_serialization.cpp src/multi_physics/QED_tests/test_picsar_span.cpp src/multi_physics/QED_tests/test_picsar_spec_functions.cpp src/multi_physics/QED_tests/validation/validation.ipynb commit f6d7ff9ca33be852663906b8ebef480d7864b51f Author: Luca Fedeli Date: Wed Jul 8 11:07:11 2020 +0200 added comments src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp commit 1ad4866b5e5920233c88b25f8adf1da153e4da7e Author: Luca Fedeli Date: Wed Jul 8 10:48:55 2020 +0200 added comments src/multi_physics/README commit cc1a04e302d5f4680ab978889b57be7704287825 Author: Luca Fedeli Date: Wed Jul 8 04:01:00 2020 +0200 added comments src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit 4818e2d67bc4ef83d9cb0176d853c1511895c1fb Author: Luca Fedeli Date: Wed Jul 8 00:56:22 2020 +0200 added comments src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp commit b7a0578de8199166ca735a468b4a231eeaeda2cd Author: Luca Fedeli Date: Wed Jul 8 00:27:35 2020 +0200 fixed bug in fake table src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp commit 447cdb76ce2d6792efa58b07af38f10083826eaf Author: Luca Fedeli Date: Wed Jul 8 00:09:21 2020 +0200 bugfixing src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit 51ad949dae0960da7d3035adf6c06f13e87c7b92 Author: Luca Fedeli Date: Tue Jul 7 18:45:27 2020 +0200 [warning: a bug has been introduced] src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp commit 1c8353745483a8c8541d4b8064b2ec0420bf7322 Author: Luca Fedeli Date: Tue Jul 7 18:20:47 2020 +0200 added comments and cleaning src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_table_generator/table_generator.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp src/multi_physics/test_gpu/test_breit_wheeler.cu commit 8c2175b01b12a76c5c0f8a6e0fa0efb5945948bb Author: Luca Fedeli Date: Tue Jul 7 17:33:45 2020 +0200 simplified some names, added comments src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp commit b22f93b3e14f993056ef83a4d7c3908a3c9bcd3c Author: Luca Fedeli Date: Tue Jul 7 17:01:34 2020 +0200 added comments src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit 973d9ef857d910e830bbe324eedaf80dc42e9363 Author: Luca Fedeli Date: Tue Jul 7 16:57:32 2020 +0200 added comments src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit 5a014e926f16d7aa6cc4fda5af04cc1cc1528ad1 Author: Luca Fedeli Date: Tue Jul 7 16:35:58 2020 +0200 added comments src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp commit c6d17cdbd7730a7ff0fc25bb1e27fe7308609975 Author: Luca Fedeli Date: Tue Jul 7 16:29:57 2020 +0200 added comments src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/README commit d4ffceaa5c6e33bed68882e311eb5baeabb4dc99 Author: lucafedeli88 Date: Tue Jul 7 13:19:39 2020 +0200 updated test and modified tables src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/test_gpu/test_breit_wheeler.cu commit 93d253db0bd38db4234a13895250373246f5ccb6 Author: Luca Fedeli Date: Tue Jul 7 04:14:08 2020 +0200 fixed table generation src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables_generator.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED_table_generator/table_generator.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp commit b8580b59876df5c9cdcc13c49c29aa04ba01f8a5 Author: Luca Fedeli Date: Mon Jul 6 23:51:05 2020 +0200 added test for progress bar src/multi_physics/QED_tests/test_progress_bar.cpp commit 7a27e90253541cd32fe35fd30e8ad23f39878577 Author: Luca Fedeli Date: Mon Jul 6 23:40:32 2020 +0200 bugfixing src/multi_physics/QED/src/utils/progress_bar.hpp src/multi_physics/QED_table_generator/table_generator.cpp commit ca9cff1a307f628a1267354448f9e2f62714476f Author: Luca Fedeli Date: Mon Jul 6 23:34:17 2020 +0200 improved comment for progress bar src/multi_physics/QED/src/utils/progress_bar.hpp src/multi_physics/QED_table_generator/table_generator.cpp commit a01c15572a3bf8d77b57af3ebb756366e49dd576 Author: Luca Fedeli Date: Mon Jul 6 18:50:20 2020 +0200 initial work to add progress bar and table generation src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables_generator.hpp src/multi_physics/QED/src/utils/progress_bar.hpp src/multi_physics/QED_table_generator/table_generator.cpp commit c9cea0c07b155a5c7a6476bf8c0cc883fcbca6d3 Author: Luca Fedeli Date: Mon Jul 6 18:21:24 2020 +0200 added some comments src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp commit ed5fd10e29fce7ad6b8bc8c7267e2646d94f7075 Author: Luca Fedeli Date: Mon Jul 6 17:10:11 2020 +0200 simplified BW table src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp commit 1e71b5221cbb65ac23a7f0e31e92b2001538c565 Author: Luca Fedeli Date: Mon Jul 6 16:50:16 2020 +0200 fixed bug and added tests src/multi_physics/QED/src/math/cmath_overloads.hpp src/multi_physics/QED_tests/test_picsar_cmath_overload.cpp commit c2465a4c7620df806cb6bfe863a88055a2cd7649 Author: Luca Fedeli Date: Mon Jul 6 16:40:08 2020 +0200 added overloaded versions of the cmath functions src/multi_physics/QED/src/math/cmath_overloads.hpp src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED/src/math/quadrature.hpp src/multi_physics/QED/src/math/vec_functions.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/physics/unit_conversion.hpp commit 80208b0e40bee29c63a2803c4c1a1b91acdea367 Author: Luca Fedeli Date: Mon Jul 6 14:52:45 2020 +0200 added some comments src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp commit 106f4c10d04616d0b090b716515f5aa5b72b864d Author: Luca Fedeli Date: Mon Jul 6 12:21:22 2020 +0200 Performed some cleaning src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp commit 083db3a4d1fcef1131376d7396cec915ab4d0b2d Author: Luca Fedeli Date: Mon Jul 6 12:19:26 2020 +0200 performed some cleaning src/multi_physics/QED/src/physics/unit_conversion.hpp commit 7d49dc4c804d903146935eef1f20035fe0150952 Author: Luca Fedeli Date: Mon Jul 6 12:16:40 2020 +0200 performed some cleaning src/multi_physics/QED/src/physics/phys_constants.h commit f2265248a0af57f8df33c1b2b13f57add426d30c Author: Luca Fedeli Date: Mon Jul 6 12:13:51 2020 +0200 performed some cleaning src/multi_physics/QED/src/physics/chi_functions.hpp commit 91c8f617e6a495dba7a27144e43d341780e9a3d0 Author: Luca Fedeli Date: Mon Jul 6 12:10:33 2020 +0200 Added comments src/multi_physics/QED/src/utils/serialization.hpp commit e29396be05cdc98bfa0f1b84633bf319e72e5892 Author: Luca Fedeli Date: Mon Jul 6 11:59:29 2020 +0200 perform some cleaning src/multi_physics/QED/src/math/quadrature.hpp src/multi_physics/QED/src/math/special_functions.hpp commit 6368e7f61d4d27b6b272dc3c1e65efff99d8f2a2 Author: Luca Fedeli Date: Mon Jul 6 11:54:05 2020 +0200 added comments src/multi_physics/QED/src/utils/picsar_algo.hpp commit 840159e94d0bb0c120db49a25bcc928c0d308e7b Author: Luca Fedeli Date: Mon Jul 6 11:44:58 2020 +0200 removed unwanted file src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/utils/rng_wrapper.hpp src/multi_physics/QED_tests/test_picsar_rng_wrapper.cpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp commit 92430b728d85156cb5041e53697cbfb97b1f264a Author: Luca Fedeli Date: Mon Jul 6 11:42:26 2020 +0200 performed some cleaning src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED/src/math/quadrature.hpp src/multi_physics/QED/src/math/special_functions.hpp src/multi_physics/QED/src/math/vec_functions.hpp commit af0fa435810e363d4a61a618bf67df792faba02f Author: Luca Fedeli Date: Mon Jul 6 11:34:44 2020 +0200 Added comments + some cleaning src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_picsar_tables.cpp commit 3b981a190d4024ad81f3008d0dbc0cb8cee46a76 Author: Luca Fedeli Date: Mon Jul 6 04:07:27 2020 +0200 added comments, added few helper functions and updated tests src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit dff762378ddcbf4110669ac964dfb0aafd43dac5 Author: Luca Fedeli Date: Mon Jul 6 03:25:45 2020 +0200 improved table 1D src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit 4ea67fa471eb58a5366a4d78a19ca22870528055 Author: Luca Fedeli Date: Mon Jul 6 02:45:11 2020 +0200 changed name of a macro src/multi_physics/QED/src/containers/picsar_span.hpp commit 806a38a60d0dcbdc9105f5c3027913b6d791fdf2 Author: Luca Fedeli Date: Mon Jul 6 02:44:43 2020 +0200 improved comments for picsar_span src/multi_physics/QED/src/containers/picsar_array.hpp src/multi_physics/QED/src/containers/picsar_span.hpp commit cfe51702fc7b5b8048dbd6965398f8a3426d2464 Author: Luca Fedeli Date: Mon Jul 6 02:27:53 2020 +0200 removed useless dependencies src/multi_physics/QED/src/containers/picsar_span.hpp src/multi_physics/QED_tests/test_picsar_span.cpp commit 3d44fd8b370ce1585926020b64cf1c0bccba3e71 Author: Luca Fedeli Date: Mon Jul 6 02:23:35 2020 +0200 improved comments for picsar_array src/multi_physics/QED/src/containers/picsar_array.hpp commit 074c2ab60d7549d060ab2297f2fe5882aaf5922d Author: Luca Fedeli Date: Mon Jul 6 01:44:37 2020 +0200 fixed issue with test src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp commit 81ff4a2187c3aadeb8a17fcb3a6684c729fc34a4 Author: Luca Fedeli Date: Mon Jul 6 01:06:47 2020 +0200 bugfixing src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp commit 53c55b3b42efb0c583afe0730314ea44c71ac16d Author: Luca Fedeli Date: Sun Jul 5 17:44:57 2020 +0200 fixed bug and updated tests src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp commit 91096d983af77d06433c87c2980ae53a05259af4 Author: Luca Fedeli Date: Sun Jul 5 17:40:32 2020 +0200 improved tests (still not working) src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp commit cafd1e42cf8834be5af9252b21a916bb999a51c4 Author: Luca Fedeli Date: Sun Jul 5 17:07:59 2020 +0200 removed unwanted file from git src/multi_physics/QED_tests/validation/validation-Copy1.ipynb commit f657058ece775cc7270605b543d454fa28511f3a Author: Luca Fedeli Date: Sun Jul 5 17:05:49 2020 +0200 improved tests src/multi_physics/QED_tests/test_picsar_algo.cpp src/multi_physics/QED_tests/validation/validation-Copy1.ipynb commit eaf2e3274050932036d73f04406b9e2b8377a17b Author: Luca Fedeli Date: Sun Jul 5 03:43:17 2020 +0200 prepared tests for QS, still failing src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp commit 7cdc8d94e0dd750fb2cf1e1f776fe1f99056b2b8 Author: Luca Fedeli Date: Sat Jul 4 13:54:37 2020 +0200 added serialization test src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp commit 41f366b1f44fc572d55cb2331d000a499be21eae Author: Luca Fedeli Date: Sat Jul 4 13:28:44 2020 +0200 added test for BW src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp commit ea5f5ceb0460f2ad771c39bc4a7c21b97ec7a789 Author: Luca Fedeli Date: Sat Jul 4 13:15:48 2020 +0200 added QS photon emission table (tests partially missing) src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_table_generator/table_generator.cpp commit 043867ad9a9599a31b4b2c634f5a2696e57fba4c Author: Luca Fedeli Date: Fri Jul 3 20:02:59 2020 +0200 added QS core functions and tabulated functions + some tests src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp commit a609b1064cf97236d18db115a1b4001702937f76 Author: Luca Fedeli Date: Fri Jul 3 20:02:11 2020 +0200 made calculations *much* faster src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp commit 21099bee6529f7a1bb4698b8959d42c250cfd092 Author: Luca Fedeli Date: Fri Jul 3 17:23:30 2020 +0200 updated table generator src/multi_physics/QED_table_generator/table_generator.cpp commit 218524f87cb2a474d2c20e1c90c3e7910322ea1a Author: Luca Fedeli Date: Fri Jul 3 16:34:27 2020 +0200 added BW pair production table + tests src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp commit e1dcb6570d5e2d4bcb4ad15ce0cf6a045ce153f7 Author: Luca Fedeli Date: Fri Jul 3 12:43:41 2020 +0200 added new algorithm + test src/multi_physics/QED/src/utils/picsar_algo.hpp src/multi_physics/QED_tests/test_picsar_algo.cpp commit 63177b0665cbb07f878e2752c3fd0fa6331014fb Author: Luca Fedeli Date: Fri Jul 3 12:32:21 2020 +0200 added new functionalities to picsar tables src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit e996a7ffbf86964986cc018ea6173da01ca4eb57 Author: Luca Fedeli Date: Thu Jul 2 12:25:49 2020 +0200 fixed issue with test src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp commit d334bcfd6271f4defcc1d125f31e28da1751e514 Author: Luca Fedeli Date: Thu Jul 2 12:14:32 2020 +0200 halfway through BW tests src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp commit e2d7716e1fee130913e60440e4e82dc11a3df1a5 Author: Luca Fedeli Date: Wed Jul 1 19:08:32 2020 +0200 Initial work to add back pair production tables src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp commit 2b0fb8f8c6229968c171ee7e630f83d69e458b9c Author: Luca Fedeli Date: Wed Jul 1 16:42:09 2020 +0200 removed old code src/multi_physics/QED/src/OLD/breit_wheeler_engine.hpp src/multi_physics/QED/src/OLD/breit_wheeler_engine_ctrl.h src/multi_physics/QED/src/OLD/quantum_sync_engine.hpp src/multi_physics/QED/src/OLD/quantum_sync_engine_ctrl.h src/multi_physics/QED/src/OLD/utilities.hpp commit b76f443fbe269ce8ebbda96ccc528caff4bfa76a Author: Luca Fedeli Date: Wed Jul 1 16:37:20 2020 +0200 add cumulative probability distribution for BW and tests src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp commit 94f9514a5c78f9b2bd3a5b1711679717e241a24a Author: Luca Fedeli Date: Wed Jul 1 10:35:05 2020 +0200 bugfixing src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp commit 223bfbed5b80aa599e637521bcc95ef879ce5fdb Merge: 8806e9ce 1b07102c Author: Luca Fedeli Date: Wed Jul 1 09:32:12 2020 +0200 Merge branch 'improved' of https://github.com/lucafedeli88/picsar into improved commit 1b07102cfb3397b149e5b6c87ba31a03e4aaccfd Author: Luca Fedeli Date: Wed Jul 1 03:18:51 2020 +0200 removed old tests src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_gpu/OLD/README src/multi_physics/test_gpu/OLD/main_bw.cu src/multi_physics/test_gpu/OLD/main_qs.cu src/multi_physics/test_gpu/OLD/validate.cu commit 10eaf74c4d586e4cdba724b54ce838e5914d91e1 Author: Luca Fedeli Date: Wed Jul 1 03:16:31 2020 +0200 removed old test src/multi_physics/QED_tests/OLD/test_utilities.cpp commit ba11a0f968f5b9aea3712aac47777e8d8626d842 Author: Luca Fedeli Date: Wed Jul 1 03:13:21 2020 +0200 added new test (partially working) src/multi_physics/QED_tests/test_picsar_quantum_sync_tables.cpp commit 89f20eba261a56063afe7cf0dcc79d0c583a3c9a Author: Luca Fedeli Date: Wed Jul 1 02:11:24 2020 +0200 removed old tests and added new test src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED_tests/OLD/test_quantum_sync_engine_SI.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp commit 82bc47e7264e572a6cdae37ee588d76ae6e77f99 Merge: b78ba49a 1a43b13c Author: NeilZaim <49716072+NeilZaim@users.noreply.github.com> Date: Tue Jun 30 17:33:19 2020 +0200 Merge pull request #1 from ECP-WarpX/master_to_development Change reference of master to development commit 1a43b13cfa3c14363153f6092fa639d0303387f7 Author: Neil Zaim Date: Tue Jun 30 17:31:05 2020 +0200 Change reference of master to development performance_tests/run_alltests_1node.py commit f499dae3941d2bc4aaf6df1c71679fb541ff88ab Author: Luca Fedeli Date: Tue Jun 30 13:40:44 2020 +0200 removed unwanted files src/multi_physics/QED_tests/OLD/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/OLD/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/OLD/test_quantum_sync_engine_norm.cpp commit 8806e9cec143bb20c5a7ba5eac511041767e4324 Author: Luca Fedeli Date: Fri Jun 26 10:07:27 2020 +0200 removed several old tests src/multi_physics/QED_tests/OLD/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/OLD/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/OLD/test_quantum_sync_engine_SI.cpp src/multi_physics/QED_tests/OLD/test_quantum_sync_engine_norm.cpp commit 318f8ee753c38eaf53ca49ae7505fd2e18267f60 Author: Luca Fedeli Date: Fri Jun 26 03:46:05 2020 +0200 fixed bugs and added table generation src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_table_generator/table_generator.cpp commit 3998191a6c58981805d8d8aa577d5c84bab4fc81 Author: Luca Fedeli Date: Fri Jun 26 03:18:31 2020 +0200 initial work to add back quantum synchrotron engine src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_core.hpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_core.cpp commit 9ef2496724021de0cdd6f3a7b06a120549152c7f Author: Luca Fedeli Date: Fri Jun 26 03:17:55 2020 +0200 corrected error in validation script src/multi_physics/QED_tests/validation/validation.ipynb commit 6f634a2b4998b5a538191e142429db12e3b9626e Author: Luca Fedeli Date: Thu Jun 25 21:45:24 2020 +0200 updated test src/multi_physics/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp commit d28a2d3c6957a1f16220907cf4272e4bac83aba9 Author: Luca Fedeli Date: Thu Jun 25 21:38:57 2020 +0200 corrected bug src/multi_physics/QED_tests/validation/validation.ipynb commit 5e96b25a43bb7b9edffab3d0bfe8660ff7f512dc Author: Luca Fedeli Date: Thu Jun 25 20:40:36 2020 +0200 removed unwanted file src/multi_physics/QED/src/physics/quantum_sync/a.out commit 9b24b72b969e6b5b02bcd29a994bb159bc648fdf Author: Luca Fedeli Date: Thu Jun 25 16:42:55 2020 +0200 added new expression for difficult integral src/multi_physics/QED_tests/validation/validation.ipynb commit 49c375e5b1cfa45fd3c2ba3029b3d5a1fae8d0ae Author: Luca Fedeli Date: Thu Jun 25 16:41:13 2020 +0200 added tests for quantum_sync production rate src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp commit 1f39fa49e4d9d92f7b26599795e02c1b5c7c1af5 Author: Luca Fedeli Date: Thu Jun 25 15:06:28 2020 +0200 replaced difficult integral with simpler form src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED_tests/test_picsar_constants.cpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp commit 66ff4ade6226d8a5faabb069bae57570e2a299d0 Author: Luca Fedeli Date: Thu Jun 25 13:19:07 2020 +0200 removed unwanted file src/multi_physics/QED/src/physics/quantum_sync/demo.cpp commit 1c477fde3374bbdc3a431385d68db1cdb68356f4 Author: Luca Fedeli Date: Thu Jun 25 13:17:45 2020 +0200 add test of a constant src/multi_physics/QED_tests/test_picsar_constants.cpp commit cac6a7316453168c230f64600981fa2091bdc7de Author: Luca Fedeli Date: Thu Jun 25 13:17:16 2020 +0200 added selection of low chi photon cutoff src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp commit c8e873085b99ebae3b5d26546118fa0167e3c884 Author: Luca Fedeli Date: Thu Jun 25 13:16:50 2020 +0200 added quantum synchrotron folder to cmakelist src/multi_physics/QED/CMakeLists.txt commit a86859d8adac8e8780f0aa26427c0d3b9d6dbcb3 Author: Luca Fedeli Date: Wed Jun 24 08:21:20 2020 +0200 Initial work to add back quantum synchrotron src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED/src/physics/quantum_sync/a.out src/multi_physics/QED/src/physics/quantum_sync/demo.cpp src/multi_physics/QED/src/physics/quantum_sync/quantum_sync_engine_tabulated_functions.hpp src/multi_physics/QED_tests/test_picsar_quantum_sync_tabulated_functions.cpp commit 4eb0c579bd07f55ebebff2ae91d68c8a598e855c Author: Luca Fedeli Date: Tue Jun 23 16:32:23 2020 +0200 updated test GPU src/multi_physics/test_gpu/test_breit_wheeler.cu commit 28f31637c83017cd808ba5b881ec77fa8a29b750 Author: Luca Fedeli Date: Tue Jun 23 16:29:48 2020 +0200 updated table generator src/multi_physics/QED_table_generator/table_generator.cpp commit a37107361510de2d8a63c778b7e87459437f3ce2 Author: Luca Fedeli Date: Tue Jun 23 16:28:25 2020 +0200 simplified BW table src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp commit 63ba15a353b5566f70ca52f6d11b0e1193d883c5 Author: lucafedeli88 Date: Tue Jun 23 15:44:32 2020 +0200 added a GPU test for BW_dndt src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/test_gpu/test_breit_wheeler.cu commit a6e435a8b5743d3e4d355fcf3720a2a7a05b5a43 Author: Luca Fedeli Date: Mon Jun 22 03:31:30 2020 +0200 Initial work to add table_generator src/multi_physics/QED_table_generator/table_generator.cpp commit 5ce9b467d6cf8c7048ee94cf7f4ee74e1cf91a57 Author: Luca Fedeli Date: Mon Jun 22 02:48:25 2020 +0200 removed test program src/multi_physics/test_program/CMakeLists.txt src/multi_physics/test_program/companion_notebook.ipynb src/multi_physics/test_program/src/commons.h src/multi_physics/test_program/src/electrons.cpp src/multi_physics/test_program/src/electrons.h src/multi_physics/test_program/src/leptons.cpp src/multi_physics/test_program/src/leptons.h src/multi_physics/test_program/src/main.cpp src/multi_physics/test_program/src/photons.cpp src/multi_physics/test_program/src/photons.h src/multi_physics/test_program/src/positrons.cpp src/multi_physics/test_program/src/positrons.h src/multi_physics/test_program/src/species.cpp src/multi_physics/test_program/src/species.h commit 6e7e81a30c263792b94c965210ea0711bd24e32b Author: Luca Fedeli Date: Mon Jun 22 02:32:31 2020 +0200 completed serialization for breit-wheeler src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/utils/serialization.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit d5d5ab0695c26cec8acb5553d1ca6ff04f8b8f73 Author: Luca Fedeli Date: Sun Jun 21 23:57:42 2020 +0200 add missing test src/multi_physics/QED_tests/test_picsar_tables.cpp commit 6d5ea148375fd0fb8d04c0ce352dd72761ae8fef Author: Luca Fedeli Date: Sun Jun 21 23:56:37 2020 +0200 add serialization to 1D tables src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/utils/serialization.hpp src/multi_physics/QED_tests/test_picsar_serialization.cpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit cf41df7808a90030b6494d94a44c22ea0151d5d8 Author: Luca Fedeli Date: Sat Jun 20 13:48:37 2020 +0200 added back evolve optical depth plus tests src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp commit 25b2c92bd816508f048d2fb76b81675508ff4b3a Author: Luca Fedeli Date: Sat Jun 20 11:41:17 2020 +0200 improved out of table approximations + tests src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp commit 22e1e262786985a9be711df068d0fac6d1b6a1aa Author: Luca Fedeli Date: Sat Jun 20 10:23:36 2020 +0200 removed unused test src/multi_physics/QED_tests/OLD/test_schwinger_pair_engine_SI.cpp commit 9d35f7ec56a012228c47ff876e8f856f2bf78c6d Author: Luca Fedeli Date: Fri Jun 19 18:36:38 2020 +0200 progress towards improved BW engine src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/math/quadrature.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_table_gen.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_picsar_breit_wheeler_core.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tabulated_functions.cpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp src/multi_physics/QED_tests/validation/validation.ipynb src/multi_physics/QED_tests/validation/validation_breit_wheeler.ipynb src/multi_physics/QED_tests/validation/validation_chi.ipynb src/multi_physics/QED_tests/validation/validation_photon_emission.ipynb src/multi_physics/QED_tests/validation/validation_schwinger.ipynb commit 447b70ab4a78dbd410a3298bf74ff82f55f28c28 Author: Luca Fedeli Date: Fri Jun 19 03:36:16 2020 +0200 progress with BW tables src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_picsar_algo.cpp src/multi_physics/QED_tests/test_picsar_array.cpp src/multi_physics/QED_tests/test_picsar_breit_wheeler_tables.cpp src/multi_physics/QED_tests/test_picsar_chi_functions.cpp src/multi_physics/QED_tests/test_picsar_constants.cpp src/multi_physics/QED_tests/test_picsar_quadrature.cpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp src/multi_physics/QED_tests/test_picsar_span.cpp src/multi_physics/QED_tests/test_picsar_spec_functions.cpp src/multi_physics/QED_tests/test_picsar_tables.cpp src/multi_physics/QED_tests/test_picsar_units.cpp src/multi_physics/QED_tests/test_picsar_vec_functions.cpp commit 50e237b1bc36b231bdafb877d73ed1833f0d739a Author: Luca Fedeli Date: Mon Jun 8 07:51:23 2020 +0200 work on validation scripts src/multi_physics/QED_tests/validation/validation.ipynb commit 8bbc515ce0d028da0bbb34d719339c5d53356cc4 Author: Luca Fedeli Date: Mon Jun 8 07:51:04 2020 +0200 work on validation scripts src/multi_physics/QED_tests/validation/validation_breit_wheeler.ipynb src/multi_physics/QED_tests/validation/validation_chi.ipynb src/multi_physics/QED_tests/validation/validation_schwinger.ipynb commit b8027ccf04101fae70d990d9c0c199519b8683d8 Author: Luca Fedeli Date: Thu May 21 10:25:05 2020 +0200 moved some validation scripts src/multi_physics/QED_tests/validation/validation_breit_wheeler.ipynb src/multi_physics/QED_tests/validation/validation_photon_emission.ipynb commit 6c16c6198d4d47e0d15f5204caecbd519866b237 Author: Luca Fedeli Date: Fri May 15 18:28:08 2020 +0200 initial work on porting BW engine src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tables.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_tabulated_functions.hpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp commit 2cd331b64850e4890289c29ecc266c5d984b9f0d Author: Luca Fedeli Date: Thu May 14 10:23:09 2020 +0200 towards better lookup tables for Breit Wheeler src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_table_gen.hpp commit df771c1d1bbbf320120b5c77f261390e8d42ca39 Author: Luca Fedeli Date: Wed May 13 18:34:38 2020 +0200 added new constants and test src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED_tests/test_picsar_constants.cpp commit dacb25369fddba95bee164ed3e577269944a4e33 Author: Luca Fedeli Date: Wed May 13 17:14:07 2020 +0200 bugfixing & updated tests src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit 6f03e227dfe0365a4d0914e636163d0c0aa4c3cc Author: Luca Fedeli Date: Wed May 6 16:15:56 2020 +0200 improved lookup tables and tests src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit 74560b85d3b11a623625faea63cbf9cc0dc35ce2 Author: Luca Fedeli Date: Mon Apr 27 19:24:21 2020 +0200 added comments and new function src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit 7d22430bcf62158a31183d59d4616f5d99ac545e Author: Luca Fedeli Date: Mon Apr 27 19:23:57 2020 +0200 added test for new constant src/multi_physics/QED_tests/test_picsar_constants.cpp commit 745eb9e396ab822773d5c3e9806740f33837a565 Author: Luca Fedeli Date: Mon Apr 27 19:16:31 2020 +0200 removed old files src/multi_physics/QED/src/OLD/__qed_commons.h src/multi_physics/QED/src/OLD/lookup_tables.hpp commit 95aff0f4e8e4f565df9b490cc79eb29d8f55cdd3 Author: Luca Fedeli Date: Mon Apr 27 19:00:24 2020 +0200 added new constant + tests src/multi_physics/QED/src/math/math_constants.h commit b3c3e0abedf670b3f1ecc92fcb8c88a338a48f7a Author: Luca Fedeli Date: Mon Apr 27 18:59:49 2020 +0200 remove old tests src/multi_physics/QED_tests/OLD/test_lookup_tables.cpp commit 2196e94c1bad01572b8bb2767a61fcdf635bbb74 Author: Luca Fedeli Date: Mon Apr 27 18:59:30 2020 +0200 new lookup tables are now implemented (+tests) src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit 164c4316ca0aaca59c966086d6d2024da0537b43 Author: Luca Fedeli Date: Sat Apr 25 03:17:37 2020 +0200 added 1D lookup tables and tests src/multi_physics/QED/src/containers/picsar_tables.hpp src/multi_physics/QED_tests/test_picsar_tables.cpp commit 678edd41219cfc4df9d247bdb783bac75a02a4f3 Author: Luca Fedeli Date: Sat Apr 25 01:45:40 2020 +0200 removed no longer used file src/multi_physics/QED/src/containers/picsar_equispaced_tables.hpp commit 42f0b8131c0656027f6845890210ef54cd5cb131 Author: Luca Fedeli Date: Fri Apr 24 18:23:36 2020 +0200 removed unused define src/multi_physics/test_gpu/test_schwinger.cu commit 82df39d87a33ecf098e02d964084d9b5b63fcaaa Author: Luca Fedeli Date: Fri Apr 24 18:21:58 2020 +0200 add GPU test for schwinger src/multi_physics/test_gpu/test_schwinger.cu commit d5585bd61980dbeaf390b7eba12a7e5dc7401461 Author: Luca Fedeli Date: Fri Apr 24 17:53:11 2020 +0200 bugfixing src/multi_physics/QED/src/physics/unit_conversion.hpp commit 30e6450ac8651c65783102b3d3bb6519fb6cff3f Author: Luca Fedeli Date: Fri Apr 24 15:04:26 2020 +0200 modified constants src/multi_physics/QED_tests/test_picsar_constants.cpp commit 729eff2e61dd05e15de8d65ffdec54ecdecb05c5 Author: Luca Fedeli Date: Fri Apr 24 13:49:25 2020 +0200 moved old GPU tests src/multi_physics/test_gpu/OLD/README src/multi_physics/test_gpu/OLD/main_bw.cu src/multi_physics/test_gpu/OLD/main_qs.cu src/multi_physics/test_gpu/OLD/validate.cu commit 5ce36bc4bf38831d1cacf671a6f5dee9fa0be8b7 Author: Luca Fedeli Date: Fri Apr 24 13:12:22 2020 +0200 bugfixing and updated test src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp src/multi_physics/QED_tests/validation/validation_schwinger.ipynb commit fb355057ba6fe93cc311fd3adbca84d55c83aab8 Author: Luca Fedeli Date: Thu Apr 23 01:17:58 2020 +0200 updated schwinger engine (not fully working) src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp commit b5a2fc72616d50048fce2f5e85d4f8ae78e1e3ad Author: Luca Fedeli Date: Thu Apr 23 00:54:18 2020 +0200 Added new constant + test src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_units.cpp commit 10ca336a566025812b104092cd14181c86120cca Author: Luca Fedeli Date: Thu Apr 23 00:01:40 2020 +0200 added new constants src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_constants.cpp commit 0856ceaf69cc930181f8ea6cb39910144f08ca06 Author: Luca Fedeli Date: Wed Apr 22 23:34:16 2020 +0200 removed unused macro src/multi_physics/QED/src/qed_commons.h commit 1c650dba7f6f671b054f9a0309ccf633bf9ca1da Author: Luca Fedeli Date: Wed Apr 22 23:27:36 2020 +0200 delete old tests src/multi_physics/QED_tests/OLD/test_chi_functions_norm.cpp src/multi_physics/QED_tests/OLD/test_msg.cpp src/multi_physics/QED_tests/OLD/test_quadrature.cpp src/multi_physics/QED_tests/OLD/test_special_functions.cpp commit e505614cb613073ff9f6942c8aff633d04295d28 Author: Luca Fedeli Date: Wed Apr 22 23:24:29 2020 +0200 added validation notebook src/multi_physics/QED_tests/validation/validation_chi.ipynb commit db59623e958a4ab908665f7c5167ef4de4f6f9d1 Author: Luca Fedeli Date: Wed Apr 22 23:23:44 2020 +0200 updated chi functions and tests src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED_tests/test_picsar_chi_functions.cpp commit ca84a1b2ca86814ce63744dd5c67b301ba6b46f1 Author: Luca Fedeli Date: Wed Apr 22 16:19:11 2020 +0200 improved unit conversion src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_units.cpp commit 84de572a3760c63dc6a363aac462f7e90c90184b Author: Luca Fedeli Date: Wed Apr 22 15:41:02 2020 +0200 added constants and updated tests src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_units.cpp commit 98560a344a8c986e9f11ed987e67beb3d4b9a0bc Author: Luca Fedeli Date: Wed Apr 22 14:57:25 2020 +0200 improved unit conversion src/multi_physics/QED/src/physics/unit_conversion.hpp commit 5859bfe88b32f36de2b1b00d0a044eaa079066ee Author: Luca Fedeli Date: Wed Apr 22 14:21:32 2020 +0200 improved unit conversion and updated test src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_units.cpp commit ffb05cb64aea1184e7e11458f40d2399d2eaf6e3 Author: Luca Fedeli Date: Wed Apr 22 13:50:05 2020 +0200 improved unit conversion and updated test src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_units.cpp commit b78ba49a4299ddc8000b0ad4a244f291459fdb10 Merge: 0d38a7a4 b01bf73f Author: Luca Fedeli Date: Tue Apr 21 11:27:33 2020 +0000 Merged in QED (pull request #213) Add possiblity to include only the core functions of the QED library commit e993bb004e2561b82bd946ff081a34cd8ce8b5c0 Author: Luca Fedeli Date: Tue Apr 21 13:01:37 2020 +0200 completed tests src/multi_physics/QED_tests/test_picsar_units.cpp commit 470b9bb01ec4e6a35dfc71da03828cf8d1153c58 Author: Luca Fedeli Date: Tue Apr 21 13:01:23 2020 +0200 bugfixing src/multi_physics/QED/src/physics/unit_conversion.hpp commit ead9c1d54ceee05b99d3df014d6d9666228753d5 Author: Luca Fedeli Date: Mon Apr 20 19:09:13 2020 +0200 add more tests src/multi_physics/QED_tests/test_picsar_units.cpp commit 260ac754e71a246904830db709a23dd44c01208a Author: Luca Fedeli Date: Mon Apr 20 17:53:45 2020 +0200 added time and rate to test src/multi_physics/QED_tests/test_picsar_units.cpp commit 83fd518563d8a8155b8b89d5751bafe4c5ffdce9 Author: Luca Fedeli Date: Mon Apr 20 16:46:09 2020 +0200 added time src/multi_physics/QED_tests/test_picsar_units.cpp commit 68cba6a02b26a97902f0b922e124921d1d72c8d9 Author: Luca Fedeli Date: Mon Apr 20 15:45:33 2020 +0200 added length to unit conversion test src/multi_physics/QED_tests/test_picsar_units.cpp commit 3df5c08afc4ba66231eb8dde079ebaa7b458f465 Author: Luca Fedeli Date: Mon Apr 20 15:06:04 2020 +0200 updated test (in progress) src/multi_physics/QED_tests/test_picsar_units.cpp commit 96f786edbb9fb585d273320be6670798beb5ea2a Author: Luca Fedeli Date: Mon Apr 20 14:14:47 2020 +0200 bugfixing src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_constants.cpp commit b62e6f8c2d4dce589e571817d2d94df0a67e5be9 Author: Luca Fedeli Date: Mon Apr 20 14:13:48 2020 +0200 Minor modifications to comments src/multi_physics/QED_tests/test_picsar_algo.cpp src/multi_physics/QED_tests/test_picsar_array.cpp src/multi_physics/QED_tests/test_picsar_quadrature.cpp src/multi_physics/QED_tests/test_picsar_rng_wrapper.cpp src/multi_physics/QED_tests/test_picsar_span.cpp src/multi_physics/QED_tests/test_picsar_spec_functions.cpp src/multi_physics/QED_tests/test_picsar_vec_functions.cpp commit 6cb90b3ba740256dbacb4f690ea881c2f536a69f Author: Luca Fedeli Date: Mon Apr 20 14:11:47 2020 +0200 added constant useful for Heaviside Lorentz units src/multi_physics/QED/src/physics/phys_constants.h commit e718bd56bc013ddd29216b10815c7d78effc6c95 Author: Luca Fedeli Date: Mon Apr 20 10:44:31 2020 +0200 bugfixing src/multi_physics/QED/src/physics/unit_conversion.hpp commit b2ab2aeb1549edbc357a055d483c15b3e72e2a4c Author: Luca Fedeli Date: Mon Apr 20 10:44:09 2020 +0200 updated test src/multi_physics/QED_tests/test_picsar_quadrature.cpp commit 7bb8e9d7f90d64d2bb0ee37c8bcce7288cffc16a Author: Luca Fedeli Date: Mon Apr 20 10:43:46 2020 +0200 bugfixing src/multi_physics/QED_tests/test_picsar_constants.cpp commit 347f898937ad0a86ea8483153e62def685119808 Author: Luca Fedeli Date: Sat Apr 18 18:57:06 2020 +0200 improved unit conversion & added Heaviside Lorentz units src/multi_physics/QED/src/physics/unit_conversion.hpp commit ac19168000a65f5116424626d0822e9e9da54473 Author: Luca Fedeli Date: Sat Apr 18 15:11:32 2020 +0200 added ev, kev, MeV and GeV to phys constants src/multi_physics/QED/src/physics/phys_constants.h src/multi_physics/QED_tests/test_picsar_constants.cpp commit 7000dfee44533c52a7b432be34b6cb11d451a6f9 Author: Luca Fedeli Date: Sat Apr 18 14:20:41 2020 +0200 added mu0 src/multi_physics/QED/src/physics/phys_constants.h src/multi_physics/QED_tests/test_picsar_constants.cpp commit eb7d65ae6aea122a58ab37448f006a1fd2c62e70 Author: Luca Fedeli Date: Sat Apr 18 13:08:36 2020 +0200 bugfixing src/multi_physics/QED/src/physics/phys_constants.h src/multi_physics/QED_tests/test_picsar_constants.cpp commit 5914fa4e3c3534260a30dbd6c7e7666a48d5c283 Author: Luca Fedeli Date: Sat Apr 18 13:01:42 2020 +0200 bugfixing src/multi_physics/QED/src/physics/phys_constants.h src/multi_physics/QED/src/physics/unit_conversion.hpp commit 9916584326f03dddf7584ec38f9eec9036472e5b Author: Luca Fedeli Date: Sat Apr 18 13:01:05 2020 +0200 added test for constants src/multi_physics/QED_tests/test_picsar_constants.cpp commit b21c5b0d4ef3d2b98d65a5b4184522c7bc6d21cc Author: Luca Fedeli Date: Sat Apr 18 12:06:40 2020 +0200 pysh and math constants are now template variables src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED/src/physics/phys_constants.h commit 0d38a7a4d098742c8558895a351df6bee1d89ab4 Merge: 6f34b886 94a4f98c Author: Neil Z Date: Wed Apr 15 17:05:36 2020 +0000 Merged in zaimn/picsar/debug_current_depo_3Dtest (pull request #219) Add l_nodal flag in current deposition 3D test Approved-by: Neil Z commit 6f34b8868b6416d5a07eaac89f6e51538fd2094d Merge: d7c74cb0 5c3a0d3f Author: Neil Z Date: Wed Apr 15 17:05:12 2020 +0000 Merged in zaimn/picsar/debug_commandParameters (pull request #220) Fix issues with reading command line parameters Approved-by: Neil Z commit d7c74cb06ab154667011e2c6bd0c9117cff88c6b Merge: 8355177c c9c3d506 Author: Neil Z Date: Wed Apr 15 17:04:53 2020 +0000 Merged in zaimn/picsar/debug_yee (pull request #218) Specify some variables in the enclosing parallels of yee.F90 Approved-by: Neil Z commit 8355177c68e30c1c7a4948d3d9c8cb331f8a4cfc Merge: af8328a7 a93ddbde Author: Shawn Johnson Date: Wed Apr 15 17:04:31 2020 +0000 Merged in sjohnsoncray/avoid_sizeof_disassociated_pointer_errors (pull request #215) Avoid SIZEOF() disassociated pointer errors Approved-by: Neil Z commit af8328a71e1f2927ebd37bbde736c26a59704835 Merge: 744f414e 6651c3b1 Author: Shawn Johnson Date: Wed Apr 15 17:04:06 2020 +0000 Merged in sjohnsoncray/fix_extra_commas_in_generate_miniapp (pull request #216) Fix extra commas in generate_miniapp Approved-by: Neil Z commit 744f414e4e157a9af7ac3d83a402bb9510532c28 Merge: 009da47f 4fe0c63b Author: Shawn Johnson Date: Wed Apr 15 17:03:46 2020 +0000 Merged in sjohnsoncray/fix_fastfft_separator (pull request #217) Fix fastfft separator Approved-by: Neil Z commit c9c3d506d8151da0b91a18d4317630fd67ec481c Merge: d18f4bb7 009da47f Author: Neil Zaim Date: Wed Apr 8 12:53:21 2020 +0200 Merge remote-tracking branch 'upstream/master' into debug_yee commit 009da47fe358d3368568c2d006575fb2dd73f45d Merge: 6dee6019 448ffa92 Author: Shawn Johnson Date: Mon Apr 6 15:35:09 2020 +0000 Merged in sjohnsoncray/allow_long_input_file_path (pull request #214) Allow long input file path Approved-by: Neil Z commit d18f4bb772fd2d27a42ec0edf156f8242cfdfcfc Author: Neil Zaim Date: Thu Apr 2 10:54:20 2020 +0200 remove undeclared dtsdr variable from OMP shared src/field_solvers/Maxwell/yee_solver/yee.F90 commit 5c3a0d3fa9668b9650dcbbdb6a3ca8ea826fb108 Author: Neil Zaim Date: Thu Apr 2 10:53:00 2020 +0200 remove unnecessary ampersand src/initialization/control_file.F90 commit b01bf73fe1fa4f2c860304ccd6b72bdc30ae9087 Merge: 82f57704 6dee6019 Author: MaxThevenet Date: Wed Apr 1 07:46:06 2020 -0700 Merge branch 'master' into QED commit fa2ca53dd7100988d60eddec94be256e0e6751d1 Author: Neil Zaim Date: Fri Mar 20 14:58:34 2020 +0100 Fix issues with reading command line parameters src/initialization/control_file.F90 commit d000136a1aa08fe50b103770766c4e3b9db5c2d1 Author: Neil Zaim Date: Fri Mar 20 10:17:11 2020 +0100 Fix issues with yee.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit 94a4f98c860d94f6d932e71d959baeb7ddae2ddd Author: Neil Zaim Date: Fri Mar 20 10:16:03 2020 +0100 Fix issues with current deposition 3D test Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 commit 6dee60190e4ca1e0c56aba0023a129fa3211a8ec Author: Remi Lehe Date: Wed Mar 4 14:04:08 2020 -0800 Fix compilation for WarpX hybrid PSATD src/Make.package commit 228c7d1d2692fa51e5baa6babef284d7fedbb221 Author: Luca Fedeli Date: Mon Feb 10 17:50:43 2020 +0100 added lookup tables src/multi_physics/QED/src/containers/picsar_equispaced_tables.hpp commit fbd1cb64ea5fa08271678fe3389d19baaecc086d Author: Luca Fedeli Date: Mon Feb 10 17:02:28 2020 +0100 Added back generate_breit_wheeler_pairs to library src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp commit a13bc834abe6522ed31662d4e04492737d29bb0f Author: Luca Fedeli Date: Fri Feb 7 18:22:23 2020 +0100 work towards new version of Breit Wheeler engine src/multi_physics/QED/src/containers/lookup_tables.h src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_table_gen.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/utils/picsar_algo.hpp commit edde21b8c3bea8f1cf67be13bc622baa225e823b Author: Luca Fedeli Date: Thu Feb 6 19:04:19 2020 +0100 initial work to test schwinger pair generation src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp src/multi_physics/QED_tests/validation/validation_schwinger.ipynb commit cf2df1057bb6fcbe7b3911a8b18f56965cd10f8b Author: Luca Fedeli Date: Wed Feb 5 18:52:06 2020 +0100 added a validation notebook src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED_tests/validation/validation_schwinger.ipynb commit da128e72c3d6dc978f8feeae892d0e65de4d1c6e Author: Luca Fedeli Date: Wed Feb 5 01:32:08 2020 +0100 added comments src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED_tests/test_picsar_schwinger_engine_core.cpp commit a0e2aa0d304fe72e1e98ad3633ecab3209a5d8c1 Author: Luca Fedeli Date: Wed Feb 5 00:35:04 2020 +0100 removed Poisson's distribution src/multi_physics/QED/src/math/poisson_distrib.hpp src/multi_physics/QED_tests/test_picsar_poisson_distrib.cpp commit 8c3598b882e1f41c6af9b20f4c83bea021c844f0 Author: Luca Fedeli Date: Tue Feb 4 18:40:00 2020 +0100 small changes src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp commit 9d315a3534637de0db63a0aff516c41efe0d8d8d Author: Luca Fedeli Date: Tue Feb 4 18:35:00 2020 +0100 Added back Poisson's distribution src/multi_physics/QED/src/math/poisson_distrib.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED_tests/test_picsar_poisson_distrib.cpp src/multi_physics/QED_tests/test_picsar_schwinger_engine.cpp commit 871d748b1114c8b256887fba622b4a2fc416c1c6 Author: Luca Fedeli Date: Tue Feb 4 18:21:38 2020 +0100 fixed bug src/multi_physics/QED/src/physics/unit_conversion.hpp commit 8a9ae13f6a948cf23bd31b838ae1fcd63bc1c18d Author: Luca Fedeli Date: Tue Feb 4 17:16:57 2020 +0100 almost done with schwinger engine, added more conversions src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_model.hpp src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_units.cpp commit 6790f5ac0a2c5847a8cfb00726580a6e0f952fb3 Author: Luca Fedeli Date: Tue Feb 4 16:26:34 2020 +0100 added comments to picsar_span src/multi_physics/QED/src/containers/picsar_span.hpp src/multi_physics/QED_tests/test_picsar_span.cpp commit 7fe941a23efa68ddc84b87a5ab9b9339e00571b0 Author: Luca Fedeli Date: Tue Feb 4 16:00:50 2020 +0100 added copy constructor src/multi_physics/QED/src/containers/picsar_array.hpp src/multi_physics/QED_tests/test_picsar_array.cpp commit 9c84d6921a134dadea8b6208d89c1f63ea4fef58 Author: Luca Fedeli Date: Tue Feb 4 15:05:31 2020 +0100 added comments to test_picsar_quadrature src/multi_physics/QED_tests/test_picsar_quadrature.cpp commit 246f06bb62f9bdc27e27c7ed8653f85431105fd5 Author: Luca Fedeli Date: Tue Feb 4 15:01:06 2020 +0100 added comments and fixed bugs in quadrature src/multi_physics/QED/src/math/quadrature.hpp commit 32767ff239644a58112954237bfe6111f00ff72f Author: Luca Fedeli Date: Tue Feb 4 14:17:05 2020 +0100 added comments to special functions src/multi_physics/QED/src/math/special_functions.hpp src/multi_physics/QED_tests/test_picsar_spec_functions.cpp commit d7847c1f34570a8d8b3a2ba5250e5599334eb45b Author: Luca Fedeli Date: Tue Feb 4 12:31:16 2020 +0100 bugfixing & comments in test_chi_functions src/multi_physics/QED_tests/test_picsar_chi_functions.cpp commit c728066be4f7be85aac309986f0852a63cdb2dfe Author: Luca Fedeli Date: Tue Feb 4 12:09:59 2020 +0100 fixed bug src/multi_physics/QED/src/physics/unit_conversion.hpp commit 6290a1cf9b4ded1c3fb412b4762b7074dced391b Author: Luca Fedeli Date: Tue Feb 4 11:57:35 2020 +0100 refactoring src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_model.hpp src/multi_physics/QED_tests/test_picsar_chi_functions.cpp commit d45203a3b5360f761aa5cc2845aac9fc3d95c897 Author: Luca Fedeli Date: Tue Feb 4 11:44:47 2020 +0100 added comments in vec functions test src/multi_physics/QED_tests/test_picsar_vec_functions.cpp commit de85dec543a0e4f9a44381f3a9ba16ded77922d8 Author: Luca Fedeli Date: Tue Feb 4 11:31:23 2020 +0100 added comments to vec_functions src/multi_physics/QED/src/math/vec_functions.hpp commit e86880edcd4873dabcaba50802d6d973f0f566a5 Author: Luca Fedeli Date: Mon Feb 3 19:10:07 2020 +0100 added comments to math constants src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED/src/math/vec_functions.hpp commit 876386c4d50d038ca22998bcc96f7c44da02a176 Author: Luca Fedeli Date: Mon Feb 3 18:46:52 2020 +0100 Added comments and missing test in test_picsar_units src/multi_physics/QED_tests/test_picsar_units.cpp commit 65a08bbe047c7238e1d9cea7fbb20413e31dae0e Author: Luca Fedeli Date: Mon Feb 3 18:29:46 2020 +0100 added comments to phys_constants & chi_functions, fixed a bug, moved two constants elsewhere src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED/src/physics/phys_constants.h src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_model.hpp commit 7359baf216d6a63fab5529a6991ada5d1c84ecce Author: Luca Fedeli Date: Sun Feb 2 10:44:49 2020 +0100 finish adding comments to unit_conversion.hpp src/multi_physics/QED/src/physics/unit_conversion.hpp commit 7497f919969584da3bf19f4099811608ff6fedfe Author: Luca Fedeli Date: Sun Feb 2 10:25:05 2020 +0100 added more comments and modified how norm_omega is managed src/multi_physics/QED/src/physics/unit_conversion.hpp commit 6cde077e6417b0d9c8f1595fd939dff69fe76d80 Author: Luca Fedeli Date: Sat Feb 1 12:46:16 2020 +0100 added several comments in unit_conversion.hpp src/multi_physics/QED/src/physics/unit_conversion.hpp commit e35d2a305f9f446601be6f778588661fc08f3d2b Author: Luca Fedeli Date: Thu Jan 30 14:42:21 2020 +0100 improved picsar_algo tests src/multi_physics/QED_tests/test_picsar_algo.cpp src/multi_physics/QED_tests/test_picsar_rng_wrapper.cpp commit e7375a6fda2822924857779bb75c1b842f6484a3 Author: Luca Fedeli Date: Thu Jan 30 14:39:32 2020 +0100 improved rng_wrapper test src/multi_physics/QED_tests/test_picsar_rng_wrapper.cpp commit 1cbbe93ee96e4013318972c308adcc8b6d278b1b Author: Luca Fedeli Date: Thu Jan 30 14:31:10 2020 +0100 added comments to picsar_algo src/multi_physics/QED/src/utils/picsar_algo.hpp commit 837302fd61314da84aad721003ea5dca292e9b1c Author: Luca Fedeli Date: Thu Jan 30 14:19:38 2020 +0100 added comments to rng_wrapper src/multi_physics/QED/src/utils/rng_wrapper.hpp commit fb801ff42476bca7efd910a3db2ff0f28fecfe6a Author: Luca Fedeli Date: Thu Jan 30 13:50:58 2020 +0100 removed msg test src/multi_physics/QED_tests/test_picsar_msg.cpp commit 250f959b0a23e6e5785a574dd6272b097b922a7d Author: Luca Fedeli Date: Thu Jan 30 13:50:14 2020 +0100 removed msg.hpp src/multi_physics/QED/src/utils/msg.hpp commit 4edc48d457c219a3563282fa7f5175eec610d3dd Author: Luca Fedeli Date: Thu Jan 30 13:47:49 2020 +0100 Added comments to qed_commons.h src/multi_physics/QED/src/qed_commons.h commit 358b79710b4151c3c1592e6708fb0dd556a85397 Author: Luca Fedeli Date: Mon Jan 13 18:22:57 2020 +0100 initial work to add back breit wheeler engine src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_model.hpp src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED_tests/test_picsar_units.cpp commit 8fa4ef8cda765a85a95c2d9de85e62fd5c7d3ece Author: Luca Fedeli Date: Wed Dec 18 18:00:55 2019 +0100 test not working src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp commit c1642e32d7d6088b3f1fab5bb92aaccb5d35c784 Author: Luca Fedeli Date: Wed Dec 18 17:52:18 2019 +0100 fixed test src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp commit a0ba1ebee3cfaa88111686a1b8fcec30231512fe Author: Luca Fedeli Date: Wed Dec 18 17:42:11 2019 +0100 tests for schwinger process (WIP) src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_model.hpp commit b842c190e9ad2560448e35abfefd733bf499e4ca Author: Luca Fedeli Date: Wed Dec 18 15:03:15 2019 +0100 work towards having schwinger limit back src/multi_physics/QED/src/containers/lookup_table_1d.hpp src/multi_physics/QED/src/containers/lookup_tables.h src/multi_physics/QED/src/containers/picsar_span.hpp src/multi_physics/QED/src/math/poisson_distrib.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/utils/rng_wrapper.hpp src/multi_physics/QED_tests/test_picsar_array.cpp src/multi_physics/QED_tests/test_picsar_rng_wrapper.cpp src/multi_physics/QED_tests/test_picsar_span.cpp commit 47ba58a6ab13a8106f152bb2e8a5f2eaac9daf80 Author: Luca Fedeli Date: Wed Dec 18 02:09:08 2019 +0100 initial work to add back BW src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/physics/breit_wheeler/breit_wheeler_engine_core.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_model.hpp commit 9456ae583d4c4c1f526b4cc65a580e58929dc0a6 Merge: ace32311 43c6a2f8 Author: Luca Fedeli Date: Tue Dec 17 17:58:59 2019 +0100 Merge branch 'improved' of https://bitbucket.org/berkeleylab/picsar into improved commit ace323114308bd12875ee6a01299c7a7eb16a02b Author: Luca Fedeli Date: Tue Dec 17 17:58:22 2019 +0100 work towards having lookup tables back src/multi_physics/QED/src/containers/lookup_table_1d.hpp src/multi_physics/QED/src/containers/picsar_array.hpp src/multi_physics/QED/src/containers/picsar_span.hpp commit 43c6a2f81a56c623df9e661e553e6155bcf0fa6a Author: Luca Fedeli Date: Tue Dec 17 01:58:58 2019 +0100 work towards adding back schwinger limit src/multi_physics/QED/src/OLD/rng_wrapper.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/utils/rng_wrapper.hpp src/multi_physics/QED_tests/OLD/test_rng_wrapper.cpp src/multi_physics/QED_tests/test_picsar_rng_wrapper.cpp commit ea1da37c4a88c3651762825f8f65472c7d3644ad Author: Luca Fedeli Date: Mon Dec 16 17:53:20 2019 +0100 work to put back in Schwinger limit src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/OLD/msg.hpp src/multi_physics/QED/src/math/poisson_distrib.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine.hpp src/multi_physics/QED/src/physics/schwinger/schwinger_pair_engine_core.hpp src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/utils/msg.hpp src/multi_physics/QED_tests/test_picsar_chi_functions.cpp src/multi_physics/QED_tests/test_picsar_msg.cpp src/multi_physics/QED_tests/test_picsar_units.cpp commit cc2ad200dbc93a56fa3a5b35acf5d110cc4b028a Author: Luca Fedeli Date: Mon Dec 16 12:25:29 2019 +0100 fixed bugs and added back upper_bound src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/utils/picsar_algo.hpp src/multi_physics/QED_tests/test_chi_functions.cpp src/multi_physics/QED_tests/test_picsar_algo.cpp commit 93e79380f6e5993bf4804f55bd5d1b21b9b5fa2f Author: Luca Fedeli Date: Mon Dec 16 11:11:15 2019 +0100 fixed error src/multi_physics/QED_tests/test_picsar_units.cpp commit 5f032a5aa51e46d2e6588d9cbeb3f83c9578e401 Author: Luca Fedeli Date: Fri Dec 13 17:43:58 2019 +0100 done some work on chi_functions src/multi_physics/QED/src/OLD/chi_functions.hpp src/multi_physics/QED/src/physics/chi_functions.hpp src/multi_physics/QED_tests/OLD/test_chi_functions_SI.cpp src/multi_physics/QED_tests/test_chi_functions.cpp commit e48260163c6833c836a58df3f291d4a31b2f1933 Author: Luca Fedeli Date: Wed Dec 11 17:54:34 2019 +0100 added more tests and some content in /phys src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/OLD/picsar_vector.hpp src/multi_physics/QED/src/containers/picsar_array.hpp src/multi_physics/QED/src/containers/picsar_span.hpp src/multi_physics/QED/src/math/math_constants.h src/multi_physics/QED/src/math/quadrature.hpp src/multi_physics/QED/src/math/special_functions.hpp src/multi_physics/QED/src/math/vec_functions.hpp src/multi_physics/QED/src/physics/phys_constants.h src/multi_physics/QED/src/physics/unit_conversion.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_picsar_quadrature.cpp src/multi_physics/QED_tests/test_picsar_spec_functions.cpp src/multi_physics/QED_tests/test_picsar_units.cpp src/multi_physics/QED_tests/test_picsar_vec_functions.cpp commit 2d3e92e34ecbee0d0ee8be1ce52629938e24d041 Author: Luca Fedeli Date: Tue Dec 10 17:59:39 2019 +0100 WIP on math hpp files src/multi_physics/QED/src/OLD/quadrature.hpp src/multi_physics/QED/src/OLD/special_functions.hpp src/multi_physics/QED/src/OLD/vec_functions.hpp src/multi_physics/QED/src/containers/picsar_array.hpp src/multi_physics/QED/src/containers/picsar_span.hpp src/multi_physics/QED/src/math/quadrature.hpp src/multi_physics/QED/src/math/special_functions.hpp src/multi_physics/QED/src/math/vec_functions.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_picsar_array.cpp src/multi_physics/QED_tests/test_picsar_span.cpp commit 99178fd0d9f530d1a81d60dbb1fe55e1384ccf82 Author: Luca Fedeli Date: Tue Dec 10 14:34:53 2019 +0100 added picsar_array + tests and picsar_span src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/OLD/__qed_commons.h src/multi_physics/QED/src/OLD/breit_wheeler_engine.hpp src/multi_physics/QED/src/OLD/breit_wheeler_engine_ctrl.h src/multi_physics/QED/src/OLD/chi_functions.hpp src/multi_physics/QED/src/OLD/lookup_tables.hpp src/multi_physics/QED/src/OLD/msg.hpp src/multi_physics/QED/src/OLD/picsar_vector.hpp src/multi_physics/QED/src/OLD/quadrature.hpp src/multi_physics/QED/src/OLD/quantum_sync_engine.hpp src/multi_physics/QED/src/OLD/quantum_sync_engine_ctrl.h src/multi_physics/QED/src/OLD/rng_wrapper.hpp src/multi_physics/QED/src/OLD/schwinger_pair_engine.hpp src/multi_physics/QED/src/OLD/special_functions.hpp src/multi_physics/QED/src/OLD/utilities.hpp src/multi_physics/QED/src/OLD/vec_functions.hpp src/multi_physics/QED/src/containers/picsar_array.hpp src/multi_physics/QED/src/containers/picsar_span.hpp src/multi_physics/QED/src/picsar_array.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/CMakeLists.txt src/multi_physics/QED_tests/OLD/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/OLD/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/OLD/test_chi_functions_SI.cpp src/multi_physics/QED_tests/OLD/test_chi_functions_norm.cpp src/multi_physics/QED_tests/OLD/test_lookup_tables.cpp src/multi_physics/QED_tests/OLD/test_msg.cpp src/multi_physics/QED_tests/OLD/test_quadrature.cpp src/multi_physics/QED_tests/OLD/test_quantum_sync_engine_SI.cpp src/multi_physics/QED_tests/OLD/test_quantum_sync_engine_norm.cpp src/multi_physics/QED_tests/OLD/test_rng_wrapper.cpp src/multi_physics/QED_tests/OLD/test_schwinger_pair_engine_SI.cpp src/multi_physics/QED_tests/OLD/test_special_functions.cpp src/multi_physics/QED_tests/OLD/test_utilities.cpp src/multi_physics/QED_tests/test_picsar_array.cpp src/multi_physics/QED_tests/test_vec_functions.cpp src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_cpu/validation.ipynb commit 448ffa92f9a7fef0171f3256d621a497f4f574c3 Author: Shawn Johnson Date: Thu Nov 21 14:23:32 2019 -0600 To avoid needing current working directory to match that of input file, in initialization/control_file.F90 read_input_file() increased size of input file path string from 32 to 4096 characters. Also updated error message when unable to open input file to include the input file path. src/initialization/control_file.F90 commit a93ddbdecd7c8c626b346d8f3608c3f318073c7d Author: Shawn Johnson Date: Thu Nov 21 14:22:28 2019 -0600 In parallelization/mpi/mpi_routines.F90 get_local_grid_mem(), wrapped several lines calling 'SIZEOF(ptr)' with 'IF (associated(ptr))' conditional, as they were producing error, "lib-4423 : UNRECOVERABLE library error An argument to inquiry function SIZEOF is a disassociated pointer or an unallocated array". src/parallelization/mpi/mpi_routines.F90 commit 6651c3b15e4f111f3ac9e96fd5f3065ee5cdc2fd Author: Shawn Johnson Date: Thu Nov 21 14:21:15 2019 -0600 To fix syntax errors, removed extra commas from 'fast_fftw_destroy_plan_dft,()' calls in utils/generate_miniapp.py. utils/generate_miniapp.py commit 4fe0c63b1b58626a3599037fd3c99dd7e740c7fc Author: Shawn Johnson Date: Thu Nov 21 14:07:01 2019 -0600 Fixed missing space in separator at top of field_solvers/Maxwell/GPSTD_solver/fastfft.F90. This caused utils/generate_miniapp.py copy_files_from_picsar() to incorrectly parse fastfft.F90, resulting in a PICSARlite/ file with duplicate module definitions. src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 commit 82f57704c539d21dfc3f9087411ecc61cd2bb79f Author: Luca Fedeli Date: Mon Nov 4 14:27:06 2019 +0100 added const qualifiers src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp commit fab3d3c64a33451ec136dd8867801b759c2e52f0 Author: Luca Fedeli Date: Tue Oct 29 18:54:53 2019 +0100 deep copy not possible anymore on GPU src/multi_physics/QED/src/picsar_vector.hpp commit 1f6f8422b01898859ce5fb30a6ab50296ce55793 Author: Luca Fedeli Date: Fri Oct 25 15:59:50 2019 +0200 Added empty constructor src/multi_physics/QED/src/lookup_tables.hpp commit 88b09ce7c2c369208678faa3efb9ce5fa315c77a Author: Luca Fedeli Date: Fri Oct 25 15:45:08 2019 +0200 Made default constructor compilable on GPU src/multi_physics/QED/src/lookup_tables.hpp commit 4168629d375a1c88447e7f11cc9d3604411955e0 Author: Luca Fedeli Date: Wed Oct 23 12:20:03 2019 +0200 added PXRMP_GPU for empty initialization of vectors src/multi_physics/QED/src/picsar_vector.hpp commit 9d8d8dbb288c53cf9ce3798f0d53c14df43f9910 Author: Luca Fedeli Date: Wed Oct 23 12:09:26 2019 +0200 Revert "bugfixing" This reverts commit b6178a735b145fc70e8f801a94e907ad79bde7a5. src/multi_physics/QED/src/lookup_tables.hpp commit b6178a735b145fc70e8f801a94e907ad79bde7a5 Author: Luca Fedeli Date: Wed Oct 23 12:03:10 2019 +0200 bugfixing src/multi_physics/QED/src/lookup_tables.hpp commit fa6e042a6373ed9d30e4f87467fec998a04eb819 Author: Luca Fedeli Date: Fri Oct 18 18:21:56 2019 +0200 separated engine ctrl structures to ease inclusion in other codes src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/breit_wheeler_engine_ctrl.h src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED/src/quantum_sync_engine_ctrl.h commit 9af6128fd954251bdabc1924f28f53598ff528f8 Author: Luca Fedeli Date: Wed Oct 16 12:01:07 2019 +0200 simplification src/multi_physics/QED/src/lookup_tables.hpp commit b81d24bb57eb8a94937f4686ee1be1151040d992 Author: Luca Fedeli Date: Wed Oct 16 11:49:00 2019 +0200 simplyfication src/multi_physics/QED/src/utilities.hpp commit c6b9d4d3984931053346dd5552badaf10439da41 Author: Luca Fedeli Date: Wed Oct 16 11:36:55 2019 +0200 cleaning src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/test_quantum_sync_engine_SI.cpp src/multi_physics/QED_tests/test_quantum_sync_engine_norm.cpp commit e85662ef0bfe45394fb53c725f6c39a52dd71b59 Author: Luca Fedeli Date: Wed Oct 16 10:05:53 2019 +0200 restructuring code to ease the inclusion in other projects (part II) src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp commit e17445543523d3bc6662821b3f7c254c627f863b Author: Luca Fedeli Date: Tue Oct 15 18:34:23 2019 +0200 restructuring code to ease the inclusion in other projects src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/utilities.hpp commit 5e28bcc350da7fda6125c42b8c8701cfe1b0ecdf Merge: 1c0ff2b9 86d6f435 Author: Maxence Thevenet Date: Fri Oct 11 23:53:49 2019 +0000 Merged in minor_typo (pull request #212) [mini-PR] fix comment in Quantum Synchrotron Radiation engine comment Approved-by: Luca Fedeli commit 86d6f43591e523e8faa116d56e9947a7fe228ab1 Author: MaxThevenet Date: Fri Oct 11 11:17:07 2019 -0700 fix comment src/multi_physics/QED/src/quantum_sync_engine.hpp commit 1c0ff2b945d6075c7bd729d2ec987f3ba7cdc027 Merge: 99e402c7 241c8078 Author: Luca Fedeli Date: Thu Oct 10 13:42:42 2019 +0000 Merged in QED (pull request #196) [Partially ready to be reviwed] QED module commit 241c8078b3a4f8a48109562678107153cc4479a9 Merge: ce706f6a 99e402c7 Author: Luca Fedeli Date: Thu Oct 10 12:01:41 2019 +0200 Addressed conflict in shippable.yml commit 99e402c7b4a7c417ad40dba3a487aac01d7dd38d Merge: 54520957 108a6b39 Author: Remi Lehe Date: Tue Sep 3 22:47:27 2019 +0000 Merged in warpx_short_compilation (pull request #211) Avoid compiling unused functions for WarpX commit 108a6b39d8005002bc6abe083c979904ad16bae0 Author: Remi Lehe Date: Tue Sep 3 14:18:48 2019 -0700 Avoid compiling unused functions for WarpX src/Make.package commit 545209573993aa8f27b12684ed20e5f4b54c3220 Author: Remi Lehe Date: Thu Aug 29 22:15:07 2019 -0700 WarpX only compiles spectral solver for specific flag src/Make.package commit ce0b542e11821eb4bda76f5d173d3f79b901115d Author: Remi Lehe Date: Fri Jul 19 00:03:34 2019 -0700 For WarpX: Do not compile spectral code on GPU src/Make.package commit 2ee6c1be8b4f93491e7a358c26ed55d6691ff259 Author: Remi Lehe Date: Thu Jun 27 09:05:22 2019 -0700 Fix missing file src/Make.package commit bcff34587791b3854fc65d3acdc2adc6c19152bd Merge: 74559012 c61dd787 Author: David Grote Date: Thu Jun 27 05:17:48 2019 +0000 Merged in FDTD_RZ_multimode (pull request #206) FDTD RZ multimode commit 74559012068362618251b1bf0c22036f1605f400 Merge: 546c81db 06db85b9 Author: Maxence Thevenet Date: Wed Jun 26 23:18:19 2019 +0000 Merged in no_nci_filter (pull request #205) WarpX does not use this NCI Godfrey filter anymore commit c61dd787611e48bd335ec6bf00763c0d58e59672 Merge: d1fd0284 546c81db Author: Dave Grote Date: Fri Jun 21 17:00:39 2019 -0700 Merge branch 'master' into FDTD_RZ_multimode commit ce706f6a3df4287216ac25cea486aa728c7ea722 Author: Luca Fedeli Date: Fri Jun 21 11:47:34 2019 +0200 corrected bug src/multi_physics/QED/src/schwinger_pair_engine.hpp commit 546c81db663b25819bab96f89f82e9bef6c76383 Merge: dedf815a 3dcbbf42 Author: zemzemi imen Date: Mon Jun 17 21:19:27 2019 +0000 Merged in correct_k_centered (pull request #208) fixed the value of k vec in the case of a nodal grid for finite order stencil commit 3dcbbf4251ff182e11ea8576e401ddb4f19a75a1 Author: zemzemi imen Date: Mon Jun 17 16:59:50 2019 +0200 change the use of k true with onesp to reduce variables allocation src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit dedf815a36fb44c6d523e14dae534b4c73fa608b Merge: 0584c533 a3d55381 Author: Remi Lehe Date: Fri Jun 14 23:05:49 2019 +0000 Merged in nodal_deposit (pull request #209) Implement nodal option for direct current deposition Approved-by: Jean-Luc Vay commit a3d55381673d3d16378fb5a2625e540a735ac4fc Author: Remi Lehe Date: Thu Jun 13 12:36:28 2019 -0700 Fix compilation errors src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit a6224dde865f4fdb9a86c8241dd327de83d64401 Author: Remi Lehe Date: Thu Jun 13 12:18:31 2019 -0700 Adapt low-level functions src/particle_deposition/current_deposition/direct/direct_current_deposition_2d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 54681de8175db00b31c250f0d829af44c6dc19b2 Author: Remi Lehe Date: Thu Jun 13 12:17:55 2019 -0700 Add "do not wrap" marker for every function src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 15f28a589d8a87f69fcee08cd498d562d533de2a Author: Remi Lehe Date: Thu Jun 13 12:13:32 2019 -0700 Modify function calls in deposition manager src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit d1fd028415fc3b54637f4708e545b20c2b7ce7de Author: Dave Grote Date: Wed Jun 12 09:18:07 2019 -0700 Removed the unneeded pxr_getf2drz_n_energy_conserving src/field_gathering/energy_conserving/field_gathering_on_circ.F90 src/field_gathering/field_gathering_manager_circ.F90 commit 27bc4fdbff1c92de3952d85cb9c18d64bfdad566 Author: Dave Grote Date: Tue Jun 11 16:03:42 2019 -0700 Removed hankel from Make.package. It's not needed yet src/Make.package commit 3738e58cb4cd6d025941715f11debbe9a3ece304 Author: zemzemi imen Date: Tue Jun 11 23:03:57 2019 +0200 fixed the value of k vec in the case of a nodal grid for finite order stencil src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit a86b7e53291731df7d6cc52a5a504d827c5f5869 Author: Luca Fedeli Date: Thu Jun 6 17:06:34 2019 +0200 No more shadow warnings src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED/src/schwinger_pair_engine.hpp src/multi_physics/QED_tests/test_quantum_sync_engine_norm.cpp commit d2579b8afe0495a3a5a21f2a45add5160fc1d9a6 Author: Luca Fedeli Date: Thu Jun 6 16:53:38 2019 +0200 removed bug src/multi_physics/QED/src/schwinger_pair_engine.hpp commit f198a96a139458e2a2f8098e302dfeb26ff70691 Author: Luca Fedeli Date: Thu Jun 6 12:40:25 2019 +0200 corrected bug src/multi_physics/QED/src/qed_commons.h commit 56f8e2417131c21c685fc120d5ed266121264d17 Author: Luca Fedeli Date: Mon Jun 3 14:11:53 2019 +0200 corrected bug src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 883ab439a7497c3ea915a4e7522202473832e513 Author: Luca Fedeli Date: Mon Jun 3 14:09:08 2019 +0200 corrected bug src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 141b32321d2360b91474be6133a6a9ed34f1e013 Author: Luca Fedeli Date: Mon Jun 3 14:07:55 2019 +0200 added = operator for BW engine src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 0584c533ce9d43883843e4d51f32afaef5d548a0 Merge: 06625008 6b5713c6 Author: Remi Lehe Date: Fri May 31 15:49:39 2019 +0000 Merged in ckc_gpu (pull request #207) Port CKC solver to GPU Approved-by: Maxence Thevenet commit 6b5713c626bd5370a56769814e35b30e37f46e81 Author: Remi Lehe Date: Thu May 30 15:54:35 2019 -0700 Port CKC solver to GPU src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 commit dcafca98d5286d7893f62618f91c294a6cc478e0 Author: Luca Fedeli Date: Wed May 29 19:36:07 2019 +0200 schwinger pair engine almost finished src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED/src/schwinger_pair_engine.hpp src/multi_physics/QED/src/utilities.hpp commit e760902843b405df5bc7c69f29f22d1c2c9a3350 Author: Luca Fedeli Date: Wed May 29 12:18:32 2019 +0200 added new functions to schwinger pair engine (still to be implemented) src/multi_physics/QED/src/schwinger_pair_engine.hpp commit 0e23802cc39283f465427d0ede74b3932f26e888 Author: Luca Fedeli Date: Wed May 29 11:32:05 2019 +0200 actually added the test module src/multi_physics/QED_tests/test_schwinger_pair_engine_SI.cpp commit 57a68d5e96b3b884357be2b51379562da0dd9505 Author: Luca Fedeli Date: Wed May 29 11:31:34 2019 +0200 added a test module for the the Schwinger pair generator src/multi_physics/QED/src/picsar_array.hpp src/multi_physics/QED/src/schwinger_pair_engine.hpp commit 01cb7f01d6f047a5da4fe9fe6571108793afeb34 Author: Luca Fedeli Date: Wed May 29 11:07:30 2019 +0200 corrected misprint src/multi_physics/QED/src/schwinger_pair_engine.hpp commit afc8845f08b76efec7af64192a342fba03072b01 Author: Luca Fedeli Date: Wed May 29 11:04:26 2019 +0200 Initial work to implement Schwinger pair module src/multi_physics/QED/src/shwinger_pair_engine.hpp commit ecf3b79644cceb0b0c9ec61a5d3377cd7929fefc Author: Luca Fedeli Date: Tue May 28 16:24:56 2019 +0200 corrected bug src/multi_physics/QED/src/quantum_sync_engine.hpp commit 8e3eedae15b83717364faa4de72b12a36741d99f Author: Luca Fedeli Date: Tue May 28 15:41:36 2019 +0200 Added checks to QS and modified default values of the lookup table src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp commit 3aee6b76f4b25f0812e5684660fc57a308bebc2f Author: Luca Fedeli Date: Tue May 28 10:45:26 2019 +0200 gneration of the 2D lookup table is now parallelized (via openMP) src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp commit 534103515196697674690e17c90659817de1c3f6 Author: Luca Fedeli Date: Fri May 24 12:24:51 2019 +0200 new lookup table for the QS engine src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp commit e9efd05ed98e7319f1f40276b83254d54908faad Author: Luca Fedeli Date: Fri May 24 09:57:12 2019 +0200 added wrapper for bracket_and_solve_root from boost library src/multi_physics/QED/src/utilities.hpp commit a810d04e4215b742b4062cca76465140cc36b2b8 Author: Luca Fedeli Date: Thu May 23 17:14:01 2019 +0200 methods provided by msg now declared as inline src/multi_physics/QED/src/msg.hpp commit eab098441fa1ffdcc1117d04dc07e8e09f65dc9b Author: Luca Fedeli Date: Thu May 23 17:04:20 2019 +0200 RNG wrapper is now fully templated src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED/src/utilities.hpp src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/test_quantum_sync_engine_SI.cpp src/multi_physics/QED_tests/test_quantum_sync_engine_norm.cpp src/multi_physics/QED_tests/test_rng_wrapper.cpp src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_gpu/main_bw.cu src/multi_physics/test_gpu/main_qs.cu src/multi_physics/test_gpu/validate.cu src/multi_physics/test_program/src/main.cpp commit ff5b45d5f83380b874597d4140a55a6885c0a3da Author: Luca Fedeli Date: Thu May 23 14:51:06 2019 +0200 Modifications to the QS table src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED/src/utilities.hpp src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_cpu/validation_QS.ipynb commit 4f72774cb603528b616140351d3edd41d7dde87d Author: Luca Fedeli Date: Wed May 22 18:33:16 2019 +0200 Almost there with QS emission src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quadrature.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_cpu/validation_QS.ipynb commit a7c371d8a4f182883095e8e81690c3fb5f1949cd Author: Luca Fedeli Date: Tue May 21 18:49:10 2019 +0200 small modifications src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_cpu/validation_QS.ipynb commit 5889da55f322bb6ba535729e3c975fa6fb76bde8 Author: Luca Fedeli Date: Tue May 21 18:33:55 2019 +0200 corrected bugs and added new test materials (unfinished) src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_cpu/validation_QS.ipynb commit aeb41cde60bc4f70f6bc4a4ee99477b2444e64b3 Author: Luca Fedeli Date: Tue May 21 11:50:50 2019 +0200 Corrected bug src/multi_physics/QED/src/quantum_sync_engine.hpp commit 3bffc3540e9211abb70683ab25e424d259d11dcc Author: Luca Fedeli Date: Mon May 20 19:13:04 2019 +0200 More checks to validate QS engine src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_cpu/validation.ipynb src/multi_physics/test_cpu/validation_QS.ipynb commit 7860ca7ca3f1c2572d57f136c201180e07af45f4 Author: Luca Fedeli Date: Mon May 20 17:30:37 2019 +0200 new integration strategy src/multi_physics/QED/src/quadrature.hpp commit 46ea1dc934cebbd894e6c96b00017690aa2ba691 Author: Luca Fedeli Date: Mon May 20 16:39:14 2019 +0200 corrected bugs & new changes to the integration methods src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/quadrature.hpp commit fb458f1a2bd45c12ab4b99f7819a21318332401b Author: Luca Fedeli Date: Mon May 20 16:08:47 2019 +0200 Corrected bugs in QS engine and changed integration methods src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quadrature.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED/src/special_functions.hpp src/multi_physics/QED/src/utilities.hpp src/multi_physics/test_cpu/validate.cpp commit cc95b7aafbd8afb080ddab38505250255fdac2df Author: Luca Fedeli Date: Fri May 17 19:19:46 2019 +0200 corrected bugs and added new test programs src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/test_cpu/validate.cpp src/multi_physics/test_cpu/validation.ipynb commit 2c73de56a6e0c25b442d8c3cd863dea9eb0b6ba7 Author: Dave Grote Date: Wed May 15 16:30:27 2019 -0700 Implemented field gather for FDTD RZ multimode Also fixed bug in FDTD RZ multimode B advance src/field_gathering/energy_conserving/field_gathering_on_circ.F90 src/field_gathering/field_gathering_manager_circ.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit cf7d0cf9be36ca64b1113d6e46e5cb93c4877796 Author: Luca Fedeli Date: Wed May 15 18:07:59 2019 +0200 small change src/multi_physics/QED/src/lookup_tables.hpp commit 5ca09c56a22ccdc22ff46efe7763ff491943370b Author: Luca Fedeli Date: Wed May 15 17:46:46 2019 +0200 small correction to the GPU test program src/multi_physics/test_gpu/validate.cu commit 7c7cd9a3248b6fcf921347c7f1c9abde1cb5f8c9 Author: Luca Fedeli Date: Wed May 15 17:32:12 2019 +0200 corrected bug src/multi_physics/QED/src/lookup_tables.hpp commit a1862ab5971e7d84d27219c02868d55cb2abcb86 Author: Luca Fedeli Date: Wed May 15 16:42:44 2019 +0200 Initial work to add a test program to validate the library for GPU src/multi_physics/test_cpu/validate.cpp commit 1789a103049914ea8a30e7f888388aea999cedf3 Author: Luca Fedeli Date: Wed May 15 16:32:13 2019 +0200 correct bug src/multi_physics/QED/src/breit_wheeler_engine.hpp commit f147e96f473c38c15dc3b7c2c2425efd90d0871d Author: Luca Fedeli Date: Wed May 15 16:03:42 2019 +0200 correct bug src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 19f753a6ff99b496b84a8223cbcaf9299ffdf107 Author: Luca Fedeli Date: Wed May 15 14:52:21 2019 +0200 small changes src/multi_physics/QED/src/lookup_tables.hpp commit 825e858c1e0181c43775cc99e32594c4846129a6 Author: Luca Fedeli Date: Wed May 15 12:12:52 2019 +0200 correct bugs src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/picsar_vector.hpp commit 8be4e2e922bc81f5c9568c953198c3f440bf926a Author: Luca Fedeli Date: Wed May 15 11:17:48 2019 +0200 corrected bug src/multi_physics/QED/src/lookup_tables.hpp commit 5c8791b1546665647515b71a1ac4e046ba2a56c6 Author: Luca Fedeli Date: Tue May 14 18:23:17 2019 +0200 correct bug src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 435693a8b31465fd4e3564db092f0653ee4920da Author: Luca Fedeli Date: Tue May 14 18:20:01 2019 +0200 correct bug src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 918e5033afe628ea45e0dd9ff718bc65fc95c1f5 Author: Luca Fedeli Date: Tue May 14 17:55:56 2019 +0200 correct bug src/multi_physics/test_gpu/validate.cu commit a1b4cb1daad05dae1a73f4a8b1243b1302b2abfc Author: Luca Fedeli Date: Tue May 14 17:51:44 2019 +0200 added another function to test in validate.cu src/multi_physics/test_gpu/validate.cu commit b211dc5a59400b70d087bdf931d5e2ca1e473df8 Author: Luca Fedeli Date: Tue May 14 17:34:38 2019 +0200 small correction src/multi_physics/test_gpu/main_bw.cu commit d0280b96c124a528490ac328a3ce6fe737efca1d Author: Luca Fedeli Date: Tue May 14 17:19:46 2019 +0200 small correction src/multi_physics/test_gpu/validate.cu commit 4cd7d8c326e6efd45992e4f8a950e1a2c86103cb Author: Luca Fedeli Date: Tue May 14 17:13:18 2019 +0200 Initial work to add a GPU program to validate the code. src/multi_physics/test_gpu/validate.cu commit 0342864e890568fe8c6de98cac53a2d2d2eb5e49 Author: Luca Fedeli Date: Tue May 14 17:11:57 2019 +0200 Changed default table properties src/multi_physics/QED/src/qed_commons.h commit c8232c6a4db657ad627eb25aa55ab18b6754db81 Author: Luca Fedeli Date: Tue May 14 17:02:53 2019 +0200 Corrected bug src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/test_gpu/main_bw.cu commit 5dfa8b852935a2deed965d1316dd61cddd2566ae Author: Luca Fedeli Date: Mon May 13 16:00:57 2019 +0200 now using a lot of particles in the test program src/multi_physics/test_gpu/main_qs.cu commit 3c62a200a5500085537b6272b8d8eb1897a90bb1 Author: Luca Fedeli Date: Mon May 13 15:59:11 2019 +0200 now using big table in the test program src/multi_physics/test_gpu/main_qs.cu commit 52537b1f10b50192e44b6969c12c369256fe9037 Author: Luca Fedeli Date: Mon May 13 15:45:55 2019 +0200 corrected bugs src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/test_gpu/main_qs.cu commit 84e2aa75610d238525f72e2828cc21a7b6321fb0 Author: Luca Fedeli Date: Mon May 13 15:15:16 2019 +0200 correct bug src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp commit cb6aa8f89348d81cadd342f2169be0d9095a10b6 Author: Luca Fedeli Date: Mon May 13 10:32:21 2019 +0200 Removed test program accidentally ended up in the git repo src/multi_physics/test_program/bin_test_qed/testbed commit 7f3770f8c9f3f206e12b85d102ed85b8a4b15bdf Author: Luca Fedeli Date: Mon May 13 10:26:10 2019 +0200 Core functios of QS engine can now be compiled for GPUs (tests needed) src/multi_physics/test_gpu/main_qs.cu commit 7860800fb7b39524262bbea13ac1da9445f3915e Author: Luca Fedeli Date: Fri May 10 18:44:08 2019 +0200 more work to test QS engine on the GPU src/multi_physics/test_gpu/main_qs.cu commit 9f928e5a1198e3e0c021c1b01f10e617cc1a2ab2 Author: Luca Fedeli Date: Fri May 10 18:41:40 2019 +0200 corrected bugs src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/test_gpu/main_qs.cu commit dee64223b5d0c72cdab9865c599ea7bbdb7c7af0 Author: Luca Fedeli Date: Fri May 10 18:19:05 2019 +0200 More work to test QS engine on the GPU src/multi_physics/test_gpu/main_qs.cu commit 339df7f91fd9ed047d2f356dbea54819725070da Author: Luca Fedeli Date: Fri May 10 18:01:32 2019 +0200 Corrected bugs and initial work for QS test program on GPU src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/test_gpu/main_qs.cu commit fe2b25b70b926c52214a6dde2805b14c60b76b45 Author: Luca Fedeli Date: Fri May 10 16:25:37 2019 +0200 QS engine is now GPU-friendly [should be tested extensively!] src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp commit b5030524434c441183e1635cc5b27701a7f0ca0e Author: Luca Fedeli Date: Fri May 10 15:33:04 2019 +0200 evolve_opt_depth_and_determine_event of QS engine ported for GPU src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp commit 24dcd267130af4264e4ac881cc9cb767824008cf Author: Luca Fedeli Date: Fri May 10 15:22:17 2019 +0200 Removed outdated comment src/multi_physics/QED/src/breit_wheeler_engine.hpp commit f71fda7b07d8654c67d37630d5f12f7348ca37e5 Author: Luca Fedeli Date: Fri May 10 15:21:59 2019 +0200 correct bug src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 7930c52bbd71b418376cf5a8f6eb84cd795f30ca Author: Luca Fedeli Date: Fri May 10 15:13:23 2019 +0200 removed outdated comments and transferred an error message btw two func src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 0c2765bb915987b09cfedcbbe98123559da80151 Author: Luca Fedeli Date: Fri May 10 14:58:10 2019 +0200 Initial work to make QS engine GPU-friendly src/multi_physics/QED/src/quantum_sync_engine.hpp commit fc42007fd2d927f3fa937f0dec9229036332b49f Author: Luca Fedeli Date: Fri May 10 14:57:38 2019 +0200 aesthetic change src/multi_physics/QED/src/breit_wheeler_engine.hpp commit e2301d849e51ce72b93f61275a50fe7b73b5f5bd Author: Luca Fedeli Date: Fri May 10 14:35:12 2019 +0200 Small name changes and removing unused dependencies src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/test_gpu/README src/multi_physics/test_gpu/main_bw.cu src/multi_physics/test_program/bin_test_qed/testbed commit 822d45612647faa6888b55f6e9cc91aceab795bd Author: Luca Fedeli Date: Thu May 9 18:12:37 2019 +0200 Updated README src/multi_physics/test_gpu/README commit bd1dc94cba8711ad42768bb2fc85d8354e4533b1 Author: Luca Fedeli Date: Thu May 9 18:04:32 2019 +0200 corrected bug src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/picsar_vector.hpp commit 8407c0b8fcd3b77b3d50d95216528c3fda33a917 Author: Luca Fedeli Date: Thu May 9 17:02:53 2019 +0200 corrected bug src/multi_physics/test_gpu/main.cu commit 5f6328f4159888c12dec58d965768aff43669a5e Author: Luca Fedeli Date: Thu May 9 16:59:24 2019 +0200 Small change in the lookup tables src/multi_physics/test_gpu/main.cu commit bde3c36f076e54ccb2c413eacecffcb1771ad7f8 Author: Luca Fedeli Date: Thu May 9 16:54:15 2019 +0200 Added GPU test program to git src/multi_physics/test_gpu/README src/multi_physics/test_gpu/main.cu commit ae4eff2dd0807efc8aad130cd5b00da8646613dc Author: Luca Fedeli Date: Thu May 9 14:48:54 2019 +0200 Modifications to make the library more GPU friendly src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/utilities.hpp commit 874e6e02b567bff067bd058dd0f35d07dc20ee29 Author: Luca Fedeli Date: Thu May 9 11:41:05 2019 +0200 Updated test program src/multi_physics/test_program/src/main.cpp commit 3a4e6e11112c4d1d38ff0d768d728a1c022e6114 Author: Luca Fedeli Date: Thu May 9 11:40:38 2019 +0200 Corrected a bug src/multi_physics/QED/src/lookup_tables.hpp commit d9fddd55e87b12e9421344af0c8a132c6b8df09a Author: Luca Fedeli Date: Thu May 9 11:06:50 2019 +0200 Corrected bugs src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp commit abfd76aec854d2fbd946dc97bb36120fc12bc4a4 Author: Luca Fedeli Date: Thu May 9 11:00:00 2019 +0200 Updated CMakeList src/multi_physics/CMakeLists.txt commit 36adcc2fbf7907d81f451abb754a8d8a0b042101 Author: Luca Fedeli Date: Thu May 9 10:59:20 2019 +0200 Removed unused folder src/multi_physics/QED_demos/CMakeLists.txt commit d3afe273daa289da50cb8721cea4dd94b97d54fb Author: Luca Fedeli Date: Thu May 9 10:58:03 2019 +0200 Removed auxiliary table from BW engine and corrected bug in BW engine src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 06db85b9682d379311508f22a6e7bfe2ec7e23de Author: MaxThevenet Date: Wed May 8 16:16:51 2019 -0700 WarpX does not use this NCI Godfrey filter anymore src/Make.package commit b4d04fcb95702871622d825d47b708a5e1032aee Merge: 4466c252 06625008 Author: Dave Grote Date: Wed May 8 09:53:08 2019 -0700 Merge branch 'master' into FDTD_RZ_multimode commit 066250080dd795920252df3a9ce144c7690c94b9 Merge: 93b5159f c3b87928 Author: David Grote Date: Wed May 8 16:28:46 2019 +0000 Merged in fix_intel_issue (pull request #204) Fixes OpenMP bug in emrz_evec and bvec commit c3b87928bf1dadb942eaf1f0d83fd7d99383df22 Author: Dave Grote Date: Wed May 8 09:21:42 2019 -0700 Fixes OpenMP bug in emrz_evec and bvec src/field_solvers/Maxwell/yee_solver/yee.F90 commit 4466c25210d4f067b7c5b225476eb43a1a15d628 Author: Dave Grote Date: Tue May 7 15:21:02 2019 -0700 Added apply_2dcirc_volume_scaling_j src/particle_deposition/current_deposition/esirkepov/esirkepov_circ.F90 commit 32788387df63b2c07337089c08f25d9465068545 Author: Dave Grote Date: Tue May 7 11:26:48 2019 -0700 circ field gather files included when DIM == 2 src/Make.package commit addaf416cff61ce2dd5fd9306757acff7021198d Author: Dave Grote Date: Tue May 7 11:25:52 2019 -0700 Added esirkepov_circ.F90 src/Make.package src/particle_deposition/current_deposition/esirkepov/esirkepov_circ.F90 commit 35ecc7a76fbbde2595f0946b944697b2dd60b735 Author: Dave Grote Date: Tue May 7 11:24:28 2019 -0700 Added pxrpush_emrz_evec_multimode and bvec src/field_solvers/Maxwell/yee_solver/yee.F90 commit b5aad2ee579dbe92f78493bc2f2062817544e60e Author: Dave Grote Date: Tue May 7 11:23:29 2019 -0700 Cleaned up naming in pxrpush_emrz_evec and bvec src/field_solvers/Maxwell/yee_solver/yee.F90 commit 3289bbd33da052bcac4bb99e191077b9f8c5fa41 Author: Dave Grote Date: Tue Mar 12 15:30:26 2019 -0700 Changed rz to circ for field gathering with spectral RZ This disambiguates versus the FDTD axisymmeytic version. src/field_gathering/field_gathering_manager_circ.F90 commit 5b1379765844bd7c8c417707fe490f108c1c8d70 Author: Dave Grote Date: Wed Feb 20 12:18:45 2019 -0800 Bug fix in geteb2drz_energy_conserving src/field_gathering/field_gathering_manager_circ.F90 commit eff57b3f14a2f5ec43afe8952315488bdcbffd96 Author: Dave Grote Date: Wed Feb 20 11:21:32 2019 -0800 Added field gathering for spectral RZ solver Makefile src/Make.package src/field_gathering/energy_conserving/field_gathering_on_circ.F90 src/field_gathering/field_gathering_manager_circ.F90 commit f7167f59dc2d37e666c784c589496555d1967367 Author: Luca Fedeli Date: Tue May 7 15:08:59 2019 +0200 Modifications to make the library GPU friendly src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp commit 7152a8514ffdfc3e1c3d552e527560201f2d628f Author: Luca Fedeli Date: Mon May 6 19:13:23 2019 +0200 Added some decorators for GPU porting src/multi_physics/QED/src/lookup_tables.hpp commit f57f8533cc8d0069d88f052e58b1b1be50528a11 Author: Luca Fedeli Date: Mon May 6 16:25:15 2019 +0200 removed bug src/multi_physics/QED/src/qed_commons.h commit 43746d5d655b0abd2330d83224eac07eea00a7df Author: Luca Fedeli Date: Mon May 6 15:54:20 2019 +0200 More GPU friendly code [hopefully] src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/chi_functions.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/CMakeLists.txt src/multi_physics/QED_tests/test_quantum_sync_engine_norm.cpp commit 93b5159f4bfee2c33a77d0b3718f3090397a21fa Merge: 8340ec90 42db5a33 Author: David Grote Date: Fri May 3 22:56:36 2019 +0000 Merged in FDTD_RZ (pull request #203) Added routine needed rho deposition in RZ commit 431086bf3c50925584f0f870a737e97019813774 Author: Luca Fedeli Date: Fri May 3 17:47:34 2019 +0200 Correct the code to silence some warnings src/multi_physics/QED_tests/test_vec_functions.cpp commit ac4a6e20c555c11d28d0eece8163d3de80f3d1bf Author: Luca Fedeli Date: Tue Apr 30 17:49:08 2019 +0200 removed unused "demo" src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit d4723f9a9b512d3ba21f56bf2ef92a181cccbc2b Author: Luca Fedeli Date: Tue Apr 30 16:31:37 2019 +0200 Dropping Kokkos support src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_demos/CMakeLists.txt src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/test_quantum_sync_engine_SI.cpp src/multi_physics/QED_tests/test_quantum_sync_engine_norm.cpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 9b022c7d491f7b76d68c724c3041007ef10c4d78 Author: Luca Fedeli Date: Tue Apr 30 16:00:09 2019 +0200 Now using the cloned BW engine in the test program src/multi_physics/test_program/src/main.cpp commit 51796a6449fd60db326e97bda8f0fa06b64b3c05 Author: Luca Fedeli Date: Tue Apr 30 15:59:44 2019 +0200 correct bug src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 29830b86269e17a87c44e09b238a47f6bcd5b29f Author: Luca Fedeli Date: Mon Apr 29 19:47:30 2019 +0200 corrected bugs src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/test_program/src/main.cpp commit 42db5a330301c463e6e7604f441b7b1428a48cc3 Merge: 144dc0a6 8340ec90 Author: Dave Grote Date: Thu Apr 25 14:59:31 2019 -0700 Merge branch 'master' into FDTD_RZ commit 144dc0a6279d665c20373727e92956383b7460b3 Author: Dave Grote Date: Thu Apr 25 14:58:21 2019 -0700 Added apply_rz_volume_scaling_rho src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 8340ec905f025482a419015a1a434e35d1bdd832 Merge: b3c732db a33359e8 Author: Maxence Thevenet Date: Sat Apr 20 10:48:27 2019 +0000 Merged in compile_dim (pull request #202) Avoid compiling useless DIM-specific routines commit a33359e810786b580259c8bc16adb38459c6e732 Author: MaxThevenet Date: Sat Apr 20 03:17:37 2019 -0700 typo src/Make.package commit 47decdcfe3c081b37bf17ce54e14781c052faff7 Author: MaxThevenet Date: Sat Apr 20 02:31:12 2019 -0700 fix indent src/Make.package commit a0528fdb29bb6b8fa3a9303f0011bd53190560dc Author: MaxThevenet Date: Sat Apr 20 02:25:28 2019 -0700 fix for 2D compilation src/Make.package src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 37057293068648b9ea6758cb24385b0d0b73c459 Author: MaxThevenet Date: Fri Apr 19 17:43:47 2019 +0200 Avoid compiling useless DIM-specific routines src/Make.package src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 2bfbe48e696074e6d3055053021b3e7d84cd2d0c Author: Luca Fedeli Date: Fri Apr 19 16:13:55 2019 +0200 almost done with "export innards" feature src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/picsar_vector.hpp commit 3e677286097ccd1163047ceb40025b881533f90d Author: Luca Fedeli Date: Fri Apr 19 11:21:23 2019 +0200 now using only equispaced interpolation in BW&QS engine src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp commit b287bbf57c32071a8944d276ba2c00d9e1ed6e84 Author: Luca Fedeli Date: Fri Apr 19 10:47:04 2019 +0200 Correct bug in equispaced linear interp (now used in BW engine) src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp commit d621c6f8ac73caf86d4315760116ef712b8ae064 Author: Luca Fedeli Date: Thu Apr 18 16:19:57 2019 +0200 GPU-friendly picsar_vector and picsar_array are now used in the code src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/picsar_vector.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED_tests/test_lookup_tables.cpp commit f702673dea02f7e51b4ec68331dfb9e1fcaaad0d Author: Luca Fedeli Date: Thu Apr 18 09:29:10 2019 +0200 correct snall bug utils/postprocessing/Field.py commit b3c732db65c70e0f79401cb4c106f63c6921376b Author: Remi Lehe Date: Wed Apr 17 14:44:01 2019 -0700 Fix typo Doxygen/pages/latex_theory/Maxwell_solvers/Maxwell_PSATD_solver.tex commit da39e6e2a646a0f2ed381a5cd39960e8080ba604 Merge: e017be12 7447fc69 Author: Remi Lehe Date: Wed Apr 17 20:48:52 2019 +0000 Merged in theory (pull request #201) Use SI units and rho in the PSATD equations Approved-by: Jean-Luc Vay commit 7447fc69af732ba7caf185966b6aad8eedbfb450 Author: Remi Lehe Date: Wed Apr 17 12:43:34 2019 -0700 Use SI units and rho in the PSATD equations Doxygen/pages/latex_theory/Maxwell_solvers/Maxwell_PSATD_solver.tex commit 85a1774cb590d28777edd61dfc98cc8ffc818422 Author: Luca Fedeli Date: Wed Apr 17 19:10:33 2019 +0200 correct small bug utils/postprocessing/Field.py commit 68e4a604d490b10cae572750b38a139f7d534576 Author: Luca Fedeli Date: Wed Apr 17 18:21:04 2019 +0200 Added dockerfile to the git Dockerfile commit b27826edc4e6467051aff9e91f27f23415f23d6c Author: Luca Fedeli Date: Wed Apr 17 18:16:47 2019 +0200 bugfixing shippable.yml commit c8664916cd9de1a0ec1d85114e9d66b750b389a4 Author: Luca Fedeli Date: Wed Apr 17 17:01:26 2019 +0200 bugfixing shippable.yml commit a390de8c62cb177f8027b77f2bfc813ae60df9a8 Author: Luca Fedeli Date: Wed Apr 17 16:52:58 2019 +0200 test with a new docker image shippable.yml commit 18c31d3ebd200ee29492bc09ae56b829b732cc52 Author: Luca Fedeli Date: Wed Apr 17 16:52:07 2019 +0200 test with a new docker image shippable.yml commit 8e2f9e97f16e12ff22828a3d07cce97adff2bb55 Author: Luca Fedeli Date: Wed Apr 17 15:28:43 2019 +0200 test with a new docker image shippable.yml commit 81d1764d2d5a3b813b752565cfe2d2e3407af774 Author: Luca Fedeli Date: Wed Apr 17 10:28:47 2019 +0200 bugfixing shippable.yml commit af8822f326b0a2d759196e4f2aac3ff744214a96 Author: Luca Fedeli Date: Wed Apr 17 10:09:45 2019 +0200 bugfixing shippable.yml commit dd5acca7d6ceeb2f87c4983dc3e35f37b20897a7 Author: Luca Fedeli Date: Tue Apr 16 18:09:28 2019 +0200 bugfixing shippable.yml commit 4dca74ed59f206df68ef9d2260e0b940bc3944f4 Author: Luca Fedeli Date: Tue Apr 16 18:03:03 2019 +0200 bugfixing shippable.yml commit 53b2b469409a6e4b24212ed60caccb22fa0316a7 Author: Luca Fedeli Date: Tue Apr 16 17:51:56 2019 +0200 correct bug shippable.yml commit ced8e7e4d38814ecc825945e0d2c26c86a5424b7 Author: Luca Fedeli Date: Tue Apr 16 17:49:18 2019 +0200 another modification to use a non root user shippable.yml commit 2dec59a0572cf26cccdec334a1381374e861b514 Author: Luca Fedeli Date: Tue Apr 16 17:40:49 2019 +0200 adding "hal" user in shippable shippable.yml commit 897365e4bd45d76f5955075228986e856c2cf8d1 Author: Luca Fedeli Date: Tue Apr 16 17:24:38 2019 +0200 slight modifications shippable.yml commit f2d0e345e6ccc71167737e4fc1acf0818d6d1448 Author: Luca Fedeli Date: Tue Apr 16 17:17:53 2019 +0200 failed ... slight modifications shippable.yml commit fd2c43f18b2ecc9ef264fed4fae1f6d052e1883f Author: Luca Fedeli Date: Tue Apr 16 17:07:44 2019 +0200 failing...added some diagnostics... shippable.yml commit ba9328f8392787ebac2c13c9bdf9db489ba12413 Author: Luca Fedeli Date: Tue Apr 16 17:00:41 2019 +0200 Initial work to fix automated testing shippable.yml commit 05232d9145fe3c78bbfeda907630c64f9526d9bb Author: Luca Fedeli Date: Mon Apr 15 10:33:13 2019 +0200 removed possibility to choose different table styles src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp commit 2bf6ce9a72bf5069ebc2428622de80107851f876 Author: Luca Fedeli Date: Mon Apr 15 10:05:56 2019 +0200 Added a GPU-friendly vector class to the library (to be debugged ) src/multi_physics/QED/src/picsar_array.hpp src/multi_physics/QED/src/picsar_vector.hpp commit e017be123410b2f5779a2da11bdd2a334706b101 Merge: e8b2b415 23320494 Author: David Grote Date: Fri Apr 12 21:07:13 2019 +0000 Merged in FDTD_RZ (pull request #200) Bug fix in apply_rz_volume_scaling commit 233204942c0667b406ec875b64ff82c71c25679d Author: Dave Grote Date: Fri Apr 12 13:30:59 2019 -0700 Bug fix in apply_rz_volume_scaling src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 3f976e67f47972d66f66120d61f841747140cb40 Author: Luca Fedeli Date: Fri Apr 12 10:53:52 2019 +0200 Added GPU-friendly array class to the library src/multi_physics/QED/src/picsar_array.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/vec_functions.hpp commit e8b2b4152533ad1d385d54059693ff9a46d03054 Merge: 95536e14 940e9829 Author: David Grote Date: Wed Apr 10 22:48:04 2019 +0000 Merged in FDTD_RZ (pull request #198) FDTD RZ Approved-by: Jean-Luc Vay commit 71c99240dd0263d7a5ae017c4f2ed15f2de12f1d Author: Luca Fedeli Date: Fri Apr 5 18:45:18 2019 +0200 testing QS src/multi_physics/QED/src/quantum_sync_engine.hpp commit ab98ca7ac98ac1f611d5739a3df1d5b9ed823dec Author: Luca Fedeli Date: Thu Apr 4 17:02:04 2019 +0200 Almost done with QS engine (to be tested extensively) src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp commit 7e86c3bcb8ae807470be20bb228679c51ddd794e Author: Luca Fedeli Date: Thu Apr 4 11:50:36 2019 +0200 Work towards QS engine src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp commit 8c0e447aa555398b620119c6e69473db9404c933 Author: Luca Fedeli Date: Wed Apr 3 12:37:13 2019 +0200 Added evolve_opt_depth_and_determine_event method to QS engine src/multi_physics/QED/src/quantum_sync_engine.hpp commit 6e61f637626c7e9147311acf69ca6bef32449e50 Author: Luca Fedeli Date: Wed Apr 3 12:18:56 2019 +0200 Added interp_dN_dt function to the QS engine src/multi_physics/QED/src/quantum_sync_engine.hpp commit 063a007ee6e1773190840990957a3c50aca6b379 Author: Luca Fedeli Date: Mon Apr 1 19:04:52 2019 +0200 Some work on the companion notebook src/multi_physics/test_program/companion_notebook.ipynb commit ac8ba10dd1fc6d85522ecfb6579bd62329cb1680 Author: Luca Fedeli Date: Mon Apr 1 18:26:05 2019 +0200 Work towards quantum synchrotron engine src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED_tests/test_quantum_sync_engine_norm.cpp src/multi_physics/test_program/companion_notebook.ipynb commit 95536e14956f42347955650cf3872b7e009cdc91 Merge: a2725bab 3bccf08e Author: Remi Lehe Date: Sat Mar 30 00:37:20 2019 -0700 Merge branch 'master' of bitbucket.org:remilehe/picsar commit a2725babedc4fb3e5aa6e33fde996406c835adce Author: Remi Lehe Date: Sat Mar 30 00:36:47 2019 -0700 Set locale parameter shippable.yml commit de985d83ce919574ffe7f5010805cb4bee8d34c7 Author: Remi Lehe Date: Sat Mar 30 00:30:44 2019 -0700 Revert "Tests" This reverts commit 41c66dd6bfb0ef8afdfb7cbe8809159ad77e7482. test commit 3bccf08ec28eb69b4ead85cf447426135707cf2b Author: Remi Lehe Date: Fri Mar 29 12:06:33 2019 -0700 Test test commit 41c66dd6bfb0ef8afdfb7cbe8809159ad77e7482 Author: Remi Lehe Date: Fri Mar 29 12:06:33 2019 -0700 Tests test commit c4df74e485490c21a094c7afd6f2a325f0063509 Author: Luca Fedeli Date: Fri Mar 29 15:04:08 2019 +0100 Implemented most of the changes proposed by Henri. Done some work for QS src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/chi_functions.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quadrature.hpp src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED/src/vec_functions.hpp src/multi_physics/QED_tests/test_chi_functions_SI.cpp src/multi_physics/QED_tests/test_chi_functions_norm.cpp src/multi_physics/QED_tests/test_quantum_sync_engine_norm.cpp src/multi_physics/test_program/companion_notebook.ipynb src/multi_physics/test_program/src/main.cpp commit 9e9177d690e345a56cfb95589321358d05bf8271 Author: Jean-Luc Vay Date: Wed Mar 27 14:19:06 2019 -0700 Separated direct vectorized current deposition routines from direct_routines_generic_openmp. utils/generate_miniapp.py commit 713ade4bc04c092fd34725264da7425bd2bd9cc0 Author: Luca Fedeli Date: Tue Mar 26 10:38:08 2019 +0100 updated test program src/multi_physics/test_program/src/main.cpp commit f10e252d334106bafbf850393889474e3ea82b9d Author: Luca Fedeli Date: Tue Mar 26 10:37:36 2019 +0100 removed useless file src/multi_physics/QED_tests/test_quantum_sync_engine_norm._pp commit 56efec099672a63fa3ac834185b37e53f5e0ed12 Author: Luca Fedeli Date: Tue Mar 26 10:33:36 2019 +0100 Updated README src/multi_physics/README commit 71ca9b785fa46cc35e17d6c85038c0cf6b761561 Author: Luca Fedeli Date: Tue Mar 26 10:29:53 2019 +0100 Added another unit test src/multi_physics/QED_tests/test_quantum_sync_engine_norm.cpp commit 0a873de1ef345cbce9c21b1731eaf32f842f3f82 Author: Luca Fedeli Date: Tue Mar 26 10:27:38 2019 +0100 corrected bug in test src/multi_physics/QED_tests/test_quantum_sync_engine_SI.cpp commit 050c593b277a0811b31c53c5e87ef53182732041 Author: Luca Fedeli Date: Tue Mar 26 10:25:22 2019 +0100 Added tests for QS module src/multi_physics/QED/src/quantum_sync_engine.hpp src/multi_physics/QED_tests/test_quantum_sync_engine_SI.cpp commit 2ad52ffc2189c7811b482bd71342fd782a106ae0 Author: Luca Fedeli Date: Mon Mar 25 19:08:56 2019 +0100 some work towards QS module src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/test_quantum_sync_engine_norm._pp commit 94d0d8798973634aa17ea3dcee64782f4289769d Author: Luca Fedeli Date: Mon Mar 25 18:33:32 2019 +0100 some work towards QS module src/multi_physics/QED/src/quantum_sync_engine.hpp commit 17cfc0e04e88b46dc3c1a693d2032f55b51afd55 Author: Luca Fedeli Date: Mon Mar 25 18:10:39 2019 +0100 Now all tests pass. src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit 2d92e63a243bbdf0f2494d65e7678a55bbf6e957 Author: Luca Fedeli Date: Mon Mar 25 18:03:15 2019 +0100 corrected bug in BW engine src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit 5184b96f8da0e359e80ad4f7117be16ada56e423 Author: Luca Fedeli Date: Mon Mar 25 18:00:57 2019 +0100 added tests for utilities src/multi_physics/QED_tests/test_utilities.cpp commit 4aba492dfc73d881d883a8fb1d57f30222bf03d1 Author: Luca Fedeli Date: Mon Mar 25 16:42:19 2019 +0100 Initial work towards adding quantum synchrotron module src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/quantum_sync_engine.hpp commit ae11e469207fc67509a2d16bf87686d2726636de Author: Luca Fedeli Date: Mon Mar 25 15:28:28 2019 +0100 Added back possibility to read/write tables on disk (simple bin format) src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp commit 6e6f26ea9673434757a2c5adfdc0e2eaedb5d128 Author: Luca Fedeli Date: Mon Mar 25 10:43:26 2019 +0100 major changes to the lookup table classes src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED_tests/test_lookup_tables.cpp commit 98299979d1e2c8894734b6663e5fe38de5d86e44 Author: Luca Fedeli Date: Mon Mar 25 09:37:30 2019 +0100 Correct error in test program src/multi_physics/test_program/src/main.cpp commit 16568a2c4571e6ec90a0a6f6df8255de5d73b4bd Author: Luca Fedeli Date: Fri Mar 22 19:12:52 2019 +0100 Almost done with BW engine src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp src/multi_physics/TO_MIGRATE/CMakeLists.txt src/multi_physics/TO_MIGRATE/QED/CMakeLists.txt src/multi_physics/TO_MIGRATE/QED/src/chi_calc_functions.cpp src/multi_physics/TO_MIGRATE/QED/src/chi_calc_functions.h src/multi_physics/TO_MIGRATE/QED/src/commons.h src/multi_physics/TO_MIGRATE/QED/src/landau_lifshitz.cpp src/multi_physics/TO_MIGRATE/QED/src/landau_lifshitz.h src/multi_physics/TO_MIGRATE/QED/src/lookup_table.hpp src/multi_physics/TO_MIGRATE/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/TO_MIGRATE/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/TO_MIGRATE/QED/src/quadrature.cpp src/multi_physics/TO_MIGRATE/QED/src/quadrature.h src/multi_physics/TO_MIGRATE/QED/src/rng_wrapper.cpp src/multi_physics/TO_MIGRATE/QED/src/rng_wrapper.h src/multi_physics/TO_MIGRATE/QED/src/special_functions.cpp src/multi_physics/TO_MIGRATE/QED/src/special_functions.h src/multi_physics/TO_MIGRATE/QED/structure.md src/multi_physics/TO_MIGRATE/QED_tests/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb src/multi_physics/TO_MIGRATE/QED_tests/CMakeLists.txt src/multi_physics/TO_MIGRATE/QED_tests/src/main.cpp src/multi_physics/TO_MIGRATE/README src/multi_physics/TO_MIGRATE/scr.gnu src/multi_physics/TO_MIGRATE/scr2.gnu src/multi_physics/test_program/CMakeLists.txt src/multi_physics/test_program/companion_notebook.ipynb src/multi_physics/test_program/src/commons.h src/multi_physics/test_program/src/electrons.cpp src/multi_physics/test_program/src/electrons.h src/multi_physics/test_program/src/leptons.cpp src/multi_physics/test_program/src/leptons.h src/multi_physics/test_program/src/main.cpp src/multi_physics/test_program/src/photons.cpp src/multi_physics/test_program/src/photons.h src/multi_physics/test_program/src/positrons.cpp src/multi_physics/test_program/src/positrons.h src/multi_physics/test_program/src/species.cpp src/multi_physics/test_program/src/species.h commit 2ae57e684537f2114d4d26d23f8807260ae7a1a7 Author: Luca Fedeli Date: Thu Mar 21 18:28:35 2019 +0100 missing file in previous commit src/multi_physics/QED/src/utilities.hpp commit 8c89ea0d34293adbea5500459bcfb8cd8198fa50 Author: Luca Fedeli Date: Thu Mar 21 18:28:06 2019 +0100 Almost done with pair production (not optimized) src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h commit 82444df21ea749b710c8d946a00b814515bd736f Author: Luca Fedeli Date: Thu Mar 21 15:38:26 2019 +0100 Added check on photon energy src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 145577f86c28351510b3cfcaf13dd0c4d2889e98 Author: Luca Fedeli Date: Thu Mar 21 12:38:59 2019 +0100 corrected but in cumulative pair production probability src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 5bab4be7c91c1d7ada10fa170453f0183711be7a Author: Luca Fedeli Date: Wed Mar 20 19:03:46 2019 +0100 corrected bug src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit f8ac4221d87829e801589b6ae63f91befe74ee4a Author: Luca Fedeli Date: Wed Mar 20 19:01:27 2019 +0100 Initial work to add to the .hpp library the pair production process src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit c19a5774ab9b6f67e9888b97f295cf62ce47e1ca Author: Luca Fedeli Date: Wed Mar 20 16:41:38 2019 +0100 corrected bugs in the asymptotic behavious of T function. src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit 93fe8ed8843c5ed135be29ae5aa42ffaf711f2c7 Merge: 5a3b1e1e 18107f41 Author: Remi Lehe Date: Wed Mar 20 14:04:25 2019 +0000 Merged in fix_esirkepov_1d (pull request #199) Fix typo in 2D, order 1 Esirkepov deposition Approved-by: Maxence Thevenet commit dff1c0df15a836d8646f2d7069838195436271f1 Author: Luca Fedeli Date: Wed Mar 20 14:52:52 2019 +0100 fixed a lookup table test src/multi_physics/QED_tests/test_lookup_tables.cpp commit 7d0974d62da26bed32fb94c31140c6164fcbb02e Author: Luca Fedeli Date: Wed Mar 20 14:49:48 2019 +0100 cleaning tests src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit 6cf49c660446585a02c19667ae4c4f3fe3d6cf15 Author: Luca Fedeli Date: Wed Mar 20 14:45:18 2019 +0100 changed default table parameters src/multi_physics/QED/src/qed_commons.h commit b13fe416666c0819b898739119218a47d08aea00 Author: Luca Fedeli Date: Wed Mar 20 14:33:25 2019 +0100 Added tests, corrected a bug in rng wrapper and addressed some warnings src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/test_lookup_tables.cpp commit 4baf4728c2d68b2e947e7c9e3b06ef2b179a22ec Author: Luca Fedeli Date: Wed Mar 20 12:42:01 2019 +0100 Tiny change src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit bddedc0b3ca930a2065534dc09b538a15fb73629 Author: Luca Fedeli Date: Wed Mar 20 12:40:47 2019 +0100 Added flag to fall back onto calculated dndt if lookup is not availabe src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp commit 544a5aa6d588da89264b991d38f10d1503e2791a Author: Luca Fedeli Date: Wed Mar 20 12:35:19 2019 +0100 Now dNdt can use lookup tables src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit 21fa1b542030c5d2dac5f0efd711008f322dbc6b Author: Luca Fedeli Date: Wed Mar 20 09:23:57 2019 +0100 bugfixing src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit 4288d8ada19daa192430d850cc64267e2df9942d Author: Luca Fedeli Date: Wed Mar 20 09:02:56 2019 +0100 bugfixing src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 18107f41243f2d7b68de3b9e811629c169af20c7 Author: Remi Lehe Date: Tue Mar 19 21:49:48 2019 -0700 Fix typo in Esirkepov deposition src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit 17ade11cc3b809a757b73eba3123a012eaa2e2f8 Author: Luca Fedeli Date: Tue Mar 19 19:11:02 2019 +0100 [WON'T COMPILE!](almost done with dNdt lookup) src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit 705ee85e122356758111a8c35faae940e2a812c2 Author: Luca Fedeli Date: Tue Mar 19 18:06:21 2019 +0100 Added possibility to choose BW lookup table style src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h commit 803a092163cc10402f1ac4cdba078997b6cfc2b0 Author: Luca Fedeli Date: Tue Mar 19 17:45:59 2019 +0100 added init flag to the lookup tables (+ tests) src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED_tests/test_lookup_tables.cpp commit 96296dc20ae5b822ba44ba56bde69406adaf2f12 Author: Luca Fedeli Date: Tue Mar 19 17:33:39 2019 +0100 Cleaning src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 322dc40b665ddca5dd051dd9ae31836d51d24a31 Author: Luca Fedeli Date: Tue Mar 19 17:26:44 2019 +0100 Added lookup tables to the library (plus tests) src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/lookup_tables.hpp src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp src/multi_physics/QED_tests/test_lookup_tables.cpp commit 940e98298357517e79a6e2e1dfb477ba344c44c4 Author: Dave Grote Date: Mon Mar 18 15:01:31 2019 -0700 Fix in yee.F90 for rz and openmpi. src/field_solvers/Maxwell/yee_solver/yee.F90 commit 2ea1e80ba58fa0c32bf261c17a97c97d094e4022 Author: Luca Fedeli Date: Mon Mar 18 19:09:24 2019 +0100 Some cleaning src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 6ce364bf5060299f10d319a2e7ba39e6dacad967 Author: Luca Fedeli Date: Mon Mar 18 18:55:41 2019 +0100 correct misprint src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit 605bec829759a3f458dab4869ab869e4b30781fe Author: Luca Fedeli Date: Mon Mar 18 18:53:45 2019 +0100 Added small demo for the optical path update calculation src/multi_physics/CMakeLists.txt src/multi_physics/QED_demos/CMakeLists.txt src/multi_physics/QED_demos/demo_BW_pair_prod_rate.cpp commit d6cf7827131e0f31e20c62d538bf738aee93642d Author: Luca Fedeli Date: Mon Mar 18 18:22:40 2019 +0100 Added tests for the control struct of BW engine src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit e4e6f015e0bf86526351ce9f20ff58b929abfe2b Author: Luca Fedeli Date: Mon Mar 18 18:09:48 2019 +0100 Added (empty lookup tables file) src/multi_physics/QED/src/lookup_tables.hpp commit 93f0c3509e6c733ffeeba8707c3ead8e6af76294 Author: Luca Fedeli Date: Mon Mar 18 18:06:22 2019 +0100 Added the possibility to control threshold for optical depth evolution src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h commit 3d839dd45cf00557c19e6741e0e1bb3f6f4f1896 Author: Luca Fedeli Date: Mon Mar 18 16:36:48 2019 +0100 Eliminated redundant code with templates src/multi_physics/QED_tests/test_special_functions.cpp commit 6e72bf6c3a997a3a6abd9091f1492387bd34b0ad Author: Luca Fedeli Date: Mon Mar 18 16:19:32 2019 +0100 Added evolve_opt_depth_and_determine_event + tests src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit 26d0a96e1b3ae16080cb1e69ee7c965257620c03 Author: Luca Fedeli Date: Mon Mar 18 15:26:04 2019 +0100 Corrected bug in QED commons and added tests for BW in SI units src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit 6acee2ae35dac8c798c93635fc45ce90c78bb249 Author: Luca Fedeli Date: Mon Mar 18 14:34:34 2019 +0100 vec_functions_test now makes use of templates for tests in float/double src/multi_physics/QED_tests/test_vec_functions.cpp commit 7feb4592df9f84a0967a467a9aa0a575644a8d47 Author: Luca Fedeli Date: Mon Mar 18 14:20:26 2019 +0100 Corrected bug src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit 61452551128e94b65f7ea5fe18c8f76d8e24d4ee Author: Luca Fedeli Date: Mon Mar 18 14:15:28 2019 +0100 computation of BW total production rate is *almost* working src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit e0475177ace501976ecf39cfe710bce685e7f1fd Author: Luca Fedeli Date: Mon Mar 18 11:27:18 2019 +0100 Small "aesthetic" changes src/multi_physics/QED/src/breit_wheeler_engine.hpp commit 7d7808cfa993a235db5dde4bcfa7e9301b327109 Author: Luca Fedeli Date: Fri Mar 15 19:13:23 2019 +0100 Initial work on BW engine src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit e7a17d5bbe8016393d609fb87b426a95d29fa7a3 Author: Luca Fedeli Date: Fri Mar 15 16:15:31 2019 +0100 Removed some non portable options from Cmake Files src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED_tests/CMakeLists.txt commit 117bd3b2fabebf66f7f83c9d795df68204ee2dc3 Author: Luca Fedeli Date: Fri Mar 15 16:03:40 2019 +0100 Added more tests src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit dd41ff6fa991dcb436904b23d58de4ee5f4afb43 Author: Luca Fedeli Date: Fri Mar 15 15:58:35 2019 +0100 RNG from Kokkos can now be used. src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit a2abc80724ef200cfe5a46646daaddb8b9390f56 Author: Luca Fedeli Date: Thu Mar 14 18:11:00 2019 +0100 added some comments src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 9870eead22b2d43d6280b6718e7b6f3ccd49cc73 Author: Luca Fedeli Date: Thu Mar 14 18:10:04 2019 +0100 Initial work towards supporting Kokkos RNG src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 310a441ea28c0d00d1b2cdf889c406efed82e93b Author: Luca Fedeli Date: Thu Mar 14 17:41:24 2019 +0100 Small changes in how KOKKOS support is enabled shippable.yml src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/CMakeLists.txt src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 6e7bda91602f635db11e705a663a5a7f49771769 Author: Luca Fedeli Date: Thu Mar 14 17:11:10 2019 +0100 updated shippable.yml shippable.yml commit e7c0a0246308a5b0e3a9735e669600d7e1382a8e Author: Luca Fedeli Date: Thu Mar 14 17:09:56 2019 +0100 Initial work to add support for Kokkos RNG shippable.yml src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/CMakeLists.txt commit c7c9a6e5e6272efd52a45910f2f006d9e3004c07 Author: Luca Fedeli Date: Thu Mar 14 16:02:44 2019 +0100 Added back function to get optical depths and tests src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp commit 7a585bec15926a91986eaac6ce861e598ca368a6 Author: Luca Fedeli Date: Thu Mar 14 15:03:01 2019 +0100 Changes to rng_wrapper to switch from dynamic polymorphism to templates src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 1956620cefb123b5df90abb3d2039d08c1a8e23e Author: Luca Fedeli Date: Thu Mar 14 14:15:43 2019 +0100 Some more tests src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 0904853049fb1dda505ae5674247d739966e0049 Author: Luca Fedeli Date: Thu Mar 14 12:32:54 2019 +0100 Some work towards adding back BW engine and RNG wrapper src/multi_physics/QED/src/breit_wheeler_engine.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/rng_wrapper.hpp src/multi_physics/QED_tests/CMakeLists.txt src/multi_physics/QED_tests/test_breit_wheeler_engine_SI.cpp src/multi_physics/QED_tests/test_breit_wheeler_engine_norm.cpp src/multi_physics/QED_tests/test_rng_wrapper.cpp commit 2998fb8c1f45c152ba7e0957f86c37903ecd7c85 Author: Luca Fedeli Date: Thu Mar 14 09:59:41 2019 +0100 Small change to unit tests src/multi_physics/QED_tests/test_chi_functions_SI.cpp src/multi_physics/QED_tests/test_chi_functions_norm.cpp commit 577e941a3f49eb29bbbd5eb8c792df33bfad11f8 Author: Luca Fedeli Date: Wed Mar 13 18:45:24 2019 +0100 Correct small error src/multi_physics/QED/src/qed_commons.h commit 6a8038c0ea8ecf2978740296c61052ae20e974e8 Author: Luca Fedeli Date: Wed Mar 13 18:35:28 2019 +0100 Added chi functions (photons&leptons)+tests (float/double x SI/norm) src/multi_physics/QED/src/chi_functions.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_chi_functions_SI.cpp src/multi_physics/QED_tests/test_chi_functions_norm.cpp src/multi_physics/QED_tests/test_quadrature.cpp src/multi_physics/QED_tests/test_special_functions.cpp src/multi_physics/QED_tests/test_vec_functions.cpp commit 4071410b1de3f1d7feaea207571822247a03e539 Author: Luca Fedeli Date: Wed Mar 13 12:02:33 2019 +0100 Added compile-time choice between SI and normalized units src/multi_physics/QED/src/chi_functions.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED_tests/test_chi_functions_SI.cpp src/multi_physics/QED_tests/test_chi_functions_norm.cpp src/multi_physics/QED_tests/test_msg.cpp src/multi_physics/QED_tests/test_quadrature.cpp src/multi_physics/QED_tests/test_special_functions.cpp src/multi_physics/QED_tests/test_vec_functions.cpp commit ea8aea9964ccd9bc3048c996639afd3715802617 Author: Luca Fedeli Date: Wed Mar 13 09:55:52 2019 +0100 Added norm2 function src/multi_physics/QED/src/vec_functions.hpp src/multi_physics/QED_tests/test_vec_functions.cpp commit eedda9cddd7d2014dd233c7ba1a9c010c71a517a Author: Dave Grote Date: Tue Mar 12 15:35:30 2019 -0700 Implementation of routines for FDTD axisymmetric solver src/field_gathering/field_gathering_manager_2d.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 69aa7f7160a5e78dae0586dedfea801d2a55f55e Author: Luca Fedeli Date: Tue Mar 12 18:38:06 2019 +0100 Added more vector operations and tests... src/multi_physics/QED/src/vec_functions.hpp src/multi_physics/QED_tests/test_vec_functions.cpp commit e7ec12a559c6597ca77bac8ce25e59f973ffbbfb Author: Luca Fedeli Date: Tue Mar 12 18:15:24 2019 +0100 Added auxiliary functions to operate on vectors & relative tests. src/multi_physics/QED/src/special_functions.hpp src/multi_physics/QED/src/vec_functions.hpp src/multi_physics/QED_tests/test_quadrature.cpp src/multi_physics/QED_tests/test_vec_functions.cpp commit c1f1ee79962b91714cc49b65fd4304ac0d69552b Author: Luca Fedeli Date: Tue Mar 12 15:52:30 2019 +0100 small change to CMake file src/multi_physics/QED/CMakeLists.txt commit 6ae7d1aec4aeb2384b0aa54cb13b1fa42071e223 Author: Luca Fedeli Date: Tue Mar 12 12:35:48 2019 +0100 Added back quadrature to hpp library. Added tests src/multi_physics/QED/src/quadrature.hpp src/multi_physics/QED_tests/test_msg.cpp src/multi_physics/QED_tests/test_quadrature.cpp src/multi_physics/QED_tests/test_special_functions.cpp commit 467864eaa14782ba424b457aac9867e836905119 Author: Luca Fedeli Date: Fri Mar 8 16:49:37 2019 +0100 BOOST_CHECK_EQUAL instead of BOOST_TEST src/multi_physics/QED_tests/test_msg.cpp commit c5b1dbb6fdfc6416605be73312f8143f0923c7db Author: Luca Fedeli Date: Fri Mar 8 15:57:58 2019 +0100 Added test for msg.hpp src/multi_physics/QED/src/msg.hpp src/multi_physics/QED_tests/test_msg.cpp commit bd5d649de635d9345d1e495be6f2098ea7bc7f81 Author: Luca Fedeli Date: Fri Mar 8 15:30:49 2019 +0100 Removed bin folder src/multi_physics/QED_tests/test_bin/test_special_functions commit 682b322981614e99cee13493eee47388e781574d Author: Luca Fedeli Date: Fri Mar 8 15:23:49 2019 +0100 Corrected bug shippable.yml src/multi_physics/QED_tests/test_special_functions.cpp commit ef53b449653c586a8eb99082221d634271022b4c Author: Luca Fedeli Date: Fri Mar 8 14:17:26 2019 +0100 First steps towards a header-only library shippable.yml src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/msg.hpp src/multi_physics/QED/src/qed_commons.h src/multi_physics/QED/src/special_functions.hpp src/multi_physics/QED_tests/CMakeLists.txt src/multi_physics/QED_tests/test_bin/test_special_functions src/multi_physics/QED_tests/test_special_functions.cpp src/multi_physics/README src/multi_physics/TO_MIGRATE/CMakeLists.txt src/multi_physics/TO_MIGRATE/QED/CMakeLists.txt src/multi_physics/TO_MIGRATE/QED/src/chi_calc_functions.cpp src/multi_physics/TO_MIGRATE/QED/src/chi_calc_functions.h src/multi_physics/TO_MIGRATE/QED/src/commons.h src/multi_physics/TO_MIGRATE/QED/src/landau_lifshitz.cpp src/multi_physics/TO_MIGRATE/QED/src/landau_lifshitz.h src/multi_physics/TO_MIGRATE/QED/src/lookup_table.hpp src/multi_physics/TO_MIGRATE/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/TO_MIGRATE/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/TO_MIGRATE/QED/src/quadrature.cpp src/multi_physics/TO_MIGRATE/QED/src/quadrature.h src/multi_physics/TO_MIGRATE/QED/src/rng_wrapper.cpp src/multi_physics/TO_MIGRATE/QED/src/rng_wrapper.h src/multi_physics/TO_MIGRATE/QED/src/special_functions.cpp src/multi_physics/TO_MIGRATE/QED/src/special_functions.h src/multi_physics/TO_MIGRATE/QED/structure.md src/multi_physics/TO_MIGRATE/QED_tests/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb src/multi_physics/TO_MIGRATE/QED_tests/CMakeLists.txt src/multi_physics/TO_MIGRATE/QED_tests/companion_notebook.ipynb src/multi_physics/TO_MIGRATE/QED_tests/src/commons.h src/multi_physics/TO_MIGRATE/QED_tests/src/electrons.cpp src/multi_physics/TO_MIGRATE/QED_tests/src/electrons.h src/multi_physics/TO_MIGRATE/QED_tests/src/leptons.cpp src/multi_physics/TO_MIGRATE/QED_tests/src/leptons.h src/multi_physics/TO_MIGRATE/QED_tests/src/main.cpp src/multi_physics/TO_MIGRATE/QED_tests/src/photons.cpp src/multi_physics/TO_MIGRATE/QED_tests/src/photons.h src/multi_physics/TO_MIGRATE/QED_tests/src/positrons.cpp src/multi_physics/TO_MIGRATE/QED_tests/src/positrons.h src/multi_physics/TO_MIGRATE/QED_tests/src/species.cpp src/multi_physics/TO_MIGRATE/QED_tests/src/species.h src/multi_physics/TO_MIGRATE/README src/multi_physics/TO_MIGRATE/scr.gnu src/multi_physics/TO_MIGRATE/scr2.gnu commit e3fc7881aec1c57055d2c38d0a52d7fa62483eee Author: Luca Fedeli Date: Wed Mar 6 18:35:33 2019 +0100 Corrected bug src/multi_physics/QED/src/lookup_table.hpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp commit 945064665507445456be325319ff354daeacd5e0 Author: Luca Fedeli Date: Wed Mar 6 18:12:45 2019 +0100 Now the code can read tables from disk. But strange mem error observed src/multi_physics/QED/src/lookup_table.hpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/QED_tests/src/main.cpp commit 6115f74722d85ab313b69a6b897810fbd6e7a770 Author: Luca Fedeli Date: Wed Mar 6 16:36:56 2019 +0100 Now with pair production src/multi_physics/QED/src/lookup_table.hpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/QED/src/rng_wrapper.cpp src/multi_physics/QED/src/rng_wrapper.h src/multi_physics/QED_tests/src/main.cpp commit 8d3edec38234d646da013daa064b9e7bf7297542 Author: Luca Fedeli Date: Tue Mar 5 17:34:35 2019 +0100 Added photon destruction src/multi_physics/QED/src/rng_wrapper.cpp src/multi_physics/QED/src/rng_wrapper.h src/multi_physics/QED_tests/companion_notebook.ipynb src/multi_physics/QED_tests/src/commons.h src/multi_physics/QED_tests/src/main.cpp src/multi_physics/QED_tests/src/species.cpp src/multi_physics/QED_tests/src/species.h commit 57695ba9f9d6aa11a4ef9ce0f0d07ccebe952f7c Author: Luca Fedeli Date: Tue Mar 5 10:09:31 2019 +0100 Added option to apply physical processes according to ID in test program src/multi_physics/QED_tests/src/main.cpp src/multi_physics/QED_tests/src/species.cpp src/multi_physics/QED_tests/src/species.h commit eca8163f0317a580935bab26294630b3a3d72242 Author: Luca Fedeli Date: Mon Mar 4 16:53:31 2019 +0100 now the code computes when a pair should be generated! src/multi_physics/QED/src/commons.h src/multi_physics/QED/src/lookup_table.hpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/QED_tests/src/main.cpp commit 70f9cd51f3658a88c34279e1f38452786fd8492d Author: Luca Fedeli Date: Mon Mar 4 15:03:14 2019 +0100 Addressed all the warnings src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/QED_tests/src/main.cpp src/multi_physics/QED_tests/src/photons.cpp src/multi_physics/QED_tests/src/species.cpp commit b91ba80c65717601d999bac43bf63ccf08e42a68 Author: Luca Fedeli Date: Mon Mar 4 12:39:10 2019 +0100 Prepared function to fill lookup tables src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/QED_tests/src/main.cpp commit 4a39482c1fd60e23f27f06c66353cdcab147294e Author: Luca Fedeli Date: Mon Mar 4 12:31:41 2019 +0100 Finished lookup table templated class src/multi_physics/QED/src/commons.h src/multi_physics/QED/src/lookup_table.hpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/QED_tests/src/main.cpp commit 6bef6adf66ef86c976d432fe7c3fc3e87e62bd4c Author: Luca Fedeli Date: Fri Mar 1 18:24:08 2019 +0100 Progress towards nonlin BW src/multi_physics/QED/src/lookup_table.hpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/QED_tests/src/main.cpp commit d83991482a9113c827eb91975820fe988184d943 Author: Luca Fedeli Date: Tue Feb 26 08:46:18 2019 +0100 Removed notes from source src/multi_physics/QED/src/NOTES commit 6c7883f7ff0e310d78cdd53b86ac7d41d746a265 Author: Luca Fedeli Date: Mon Feb 25 18:39:03 2019 +0100 Some work on templated lookup table src/multi_physics/QED/src/lookup_table.hpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.h src/multi_physics/QED_tests/src/main.cpp commit 388e60d963bdec112954bc1063b3f037d0519be4 Author: Luca Fedeli Date: Mon Feb 25 16:50:41 2019 +0100 added pragram to force inline src/multi_physics/QED/src/commons.h commit f15677cf162382ad6062be137401294d7570a960 Author: Luca Fedeli Date: Mon Feb 25 16:43:44 2019 +0100 Added restrict qualifier src/multi_physics/QED/src/commons.h commit 3b65c3471d112df07662c75b134665d59cc948a4 Author: Luca Fedeli Date: Mon Feb 25 16:24:50 2019 +0100 Tiny modification for compatibility with gcc 4.8.5 src/multi_physics/QED_tests/src/species.cpp commit 05f54634a1ac4f4410c0b0a842887a33c2a72ddc Author: Luca Fedeli Date: Mon Feb 25 16:02:53 2019 +0100 Added stdexcept in includes src/multi_physics/QED/src/quadrature.h src/multi_physics/QED/src/special_functions.h commit 1a0c5fe2e8ce2cabc393368053d119fd98161e2f Author: Luca Fedeli Date: Mon Feb 25 15:58:06 2019 +0100 Slight modification to throw commands for compatibility with gcc 4.8.5 src/multi_physics/QED/src/quadrature.cpp src/multi_physics/QED/src/quadrature.h src/multi_physics/QED/src/special_functions.cpp src/multi_physics/QED/src/special_functions.h commit 87cc87b22a351cae7e27f2d6451eea9d27648593 Author: Luca Fedeli Date: Mon Feb 25 15:50:57 2019 +0100 Modified CMakeLists src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED_tests/CMakeLists.txt commit 319ce27304dff16b21013bdb7a86093d326a1590 Author: Luca Fedeli Date: Mon Feb 25 15:41:34 2019 +0100 Modified CMakeLists src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt commit 600eaf9044aab595cd929384efeeac18e787770d Author: Luca Fedeli Date: Mon Feb 25 15:34:20 2019 +0100 Added cmake --version to shippable shippable.yml commit 7f549245e99c57b94b6597420e6d42513e77e262 Author: Luca Fedeli Date: Mon Feb 25 15:28:15 2019 +0100 other changes to CMakeLists to make tests buildable shippable.yml src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED_tests/CMakeLists.txt commit edc2301f6e7093011fc1d958b569395e7a6025f0 Author: Luca Fedeli Date: Mon Feb 25 15:05:07 2019 +0100 Added check on cmake version in CMakeFiles src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED_tests/CMakeLists.txt commit a567bebb8809ab990114d1a7f04dea6368c94861 Author: Luca Fedeli Date: Mon Feb 25 14:43:21 2019 +0100 Modified shippable in order to install cmake3 instead of cmake shippable.yml commit b10ee14e49f4705e1edff9a3f82a96c75072467e Author: Luca Fedeli Date: Mon Feb 25 14:36:28 2019 +0100 Changed minimum cmake version src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED_tests/CMakeLists.txt commit 627f081a58e79616e4e4270e95ca66e2cb40d9ea Author: Luca Fedeli Date: Mon Feb 25 14:21:25 2019 +0100 Folder name change src/multi_physics/CMakeLists.txt src/multi_physics/QED_tests/CMakeLists.txt src/multi_physics/QED_tests/companion_notebook.ipynb src/multi_physics/QED_tests/src/commons.h src/multi_physics/QED_tests/src/electrons.cpp src/multi_physics/QED_tests/src/electrons.h src/multi_physics/QED_tests/src/leptons.cpp src/multi_physics/QED_tests/src/leptons.h src/multi_physics/QED_tests/src/main.cpp src/multi_physics/QED_tests/src/photons.cpp src/multi_physics/QED_tests/src/photons.h src/multi_physics/QED_tests/src/positrons.cpp src/multi_physics/QED_tests/src/positrons.h src/multi_physics/QED_tests/src/species.cpp src/multi_physics/QED_tests/src/species.h commit 3a46185d6569c98cbd5cd00d3ff15f93560a5080 Author: Luca Fedeli Date: Mon Feb 25 14:16:39 2019 +0100 Removed jupyter checkpoint src/multi_physics/QED_Tests/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb commit 691f5517c2a7faa1a9c8d182471ba4e14457ea83 Author: Luca Fedeli Date: Mon Feb 25 14:14:59 2019 +0100 Changed minimum cmake version src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED_Tests/CMakeLists.txt commit bf2769fceba59d3ff0ec9ba4399239134973186d Author: Luca Fedeli Date: Mon Feb 25 12:37:22 2019 +0100 Added cmake installation in shippable.yml shippable.yml commit a2906da0dbeb363d3aa43efe9c8afc50646c6c89 Author: Luca Fedeli Date: Mon Feb 25 12:21:47 2019 +0100 Removed build directory from shippable.yml src/multi_physics/build/CMakeCache.txt src/multi_physics/build/CMakeFiles/3.10.2/CMakeCCompiler.cmake src/multi_physics/build/CMakeFiles/3.10.2/CMakeCXXCompiler.cmake src/multi_physics/build/CMakeFiles/3.10.2/CMakeDetermineCompilerABI_C.bin 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indentation error shippable.yml commit fc491e450ff428dcdb98af620b060f8e6d1e6698 Author: Luca Fedeli Date: Mon Feb 25 12:08:05 2019 +0100 Added QED module to shippable.yml shippable.yml commit 2de97fd7c8aab1e4c4f1b8c5e3c54aa1b4a7234b Author: Luca Fedeli Date: Mon Feb 25 12:02:47 2019 +0100 Removed dummy_func which caused build error Makefile src/main.F90 commit 8f26df0f947a21f226dfb0f74a8ae3f2089d3f03 Author: Luca Fedeli Date: Mon Feb 25 11:36:56 2019 +0100 Reorganized code structure: picsar/src/multi_physics/QED src/multi_physics/CMakeLists.txt src/multi_physics/QED/CMakeLists.txt src/multi_physics/QED/src/NOTES src/multi_physics/QED/src/chi_calc_functions.cpp src/multi_physics/QED/src/chi_calc_functions.h src/multi_physics/QED/src/commons.h src/multi_physics/QED/src/landau_lifshitz.cpp src/multi_physics/QED/src/landau_lifshitz.h src/multi_physics/QED/src/lookup_table.hpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.cpp src/multi_physics/QED/src/nonlin_breit_wheeler_engine.h 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src/multi_physics/build/QED_Tests/CMakeFiles/testbed.dir/flags.make src/multi_physics/build/QED_Tests/CMakeFiles/testbed.dir/link.txt src/multi_physics/build/QED_Tests/CMakeFiles/testbed.dir/progress.make src/multi_physics/build/QED_Tests/Makefile src/multi_physics/build/QED_Tests/cmake_install.cmake src/multi_physics/build/bin/testbed src/multi_physics/build/cmake_install.cmake src/multi_physics/common_types.h src/multi_physics/special_functions.hpp commit 8dab10de91ed522e9fba3412ed204fb18bd8dc8a Author: Luca Fedeli Date: Mon Feb 25 11:11:17 2019 +0100 Added comment file QED_module_test/multi_physics/structure.md commit 82352de5e01795c2d69bbb85591bd93827cfba36 Author: Luca Fedeli Date: Fri Feb 22 18:07:44 2019 +0100 Added subtraction of optical depth in the code (plus bugfixes) QED_module_test/CMakeLists.txt QED_module_test/multi_physics/src/chi_calc_functions.h QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.h QED_module_test/src/commons.h QED_module_test/src/main.cpp QED_module_test/src/species.cpp QED_module_test/src/species.h commit 9923e91da4968e951c5502c3bc4a69b157e6904b Author: Luca Fedeli Date: Fri Feb 22 14:59:10 2019 +0100 Tested dNdt BW. Detected 2% discrepancy w python in one extreme case QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.h QED_module_test/src/main.cpp commit b4ebf77e97de7f10d5866e614fc6eece653abef0 Author: Luca Fedeli Date: Fri Feb 22 11:37:21 2019 +0100 computation of dNdt for BW now works. Check integration precision QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb QED_module_test/multi_physics/src/commons.h QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.h QED_module_test/src/main.cpp commit 03f344139660324e36a9d940168b8acd6e43b026 Author: Luca Fedeli Date: Fri Feb 22 09:28:04 2019 +0100 Correct misprint in the companion notebook QED_module_test/companion_notebook.ipynb commit 6ae596a9df807669c88f6fa55c444ee49c4042f3 Author: Luca Fedeli Date: Thu Feb 21 18:52:53 2019 +0100 Added tests for chi for leptons QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb QED_module_test/src/main.cpp commit cf6ae71a1afa29c12e10f73f9c68a59ebf577ad2 Author: Luca Fedeli Date: Thu Feb 21 18:38:24 2019 +0100 Added some new tests QED_module_test/companion_notebook.ipynb QED_module_test/src/main.cpp commit a8270ed93fbcc00df03013a9e53c97d06e30da48 Author: Luca Fedeli Date: Thu Feb 21 18:20:01 2019 +0100 Now dNdt BW works in jupyter notebook QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb commit fa3369bbee8dabd978b1a6fc1256bed866d2bd45 Author: Luca Fedeli Date: Thu Feb 21 14:38:02 2019 +0100 Slightly modified Bessel functions QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb QED_module_test/multi_physics/src/lookup_table.hpp QED_module_test/multi_physics/src/special_functions.cpp QED_module_test/multi_physics/src/special_functions.h commit 17dab6a33b55691f8ad79c3290dafab53edc65a6 Author: Luca Fedeli Date: Thu Feb 21 10:53:33 2019 +0100 Corrected bug QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb QED_module_test/multi_physics/src/chi_calc_functions.h QED_module_test/src/main.cpp commit acd7902c8c6e71ae1ea0970a640f70b013f80c02 Author: Luca Fedeli Date: Wed Feb 20 18:32:04 2019 +0100 Added material to companion book QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb commit 96ce40b3ec26e6539a23ef6d44cd08f60716dd22 Author: Luca Fedeli Date: Wed Feb 20 18:20:13 2019 +0100 Done some work for BW (there are bugs to correct) QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/src/chi_calc_functions.h QED_module_test/multi_physics/src/commons.h QED_module_test/multi_physics/src/lookup_table.hpp QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.h QED_module_test/src/main.cpp commit 5a3b1e1e0c3776ea07cbb8010a438746d53a7a17 Merge: a773ea5f 74a9bb10 Author: Remi Lehe Date: Wed Feb 20 16:51:48 2019 +0000 Merged in correct_nodal (pull request #193) Correct the calculation of the modified k vector for nodal spectral solver Approved-by: Jean-Luc Vay commit 6e7b0be16e13517853f7b2e7dfd3c222f84721d5 Author: Luca Fedeli Date: Wed Feb 20 15:08:21 2019 +0100 added fine structure constant QED_module_test/multi_physics/src/commons.h commit f15f3fc023417e0851d1d5b4c650f7f05a58598e Author: Luca Fedeli Date: Wed Feb 20 15:08:04 2019 +0100 added small note QED_module_test/multi_physics/src/quadrature.h commit 9dd64c4536c5b50a695a3dee784371fbf9d88a08 Author: Luca Fedeli Date: Wed Feb 20 14:23:45 2019 +0100 Added RNG wrapper QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.h QED_module_test/multi_physics/src/rng_wrapper.cpp QED_module_test/multi_physics/src/rng_wrapper.h QED_module_test/src/main.cpp commit 74a9bb10231933e1f82d78f80cbdb3d46c99da31 Author: Remi Lehe Date: Tue Feb 19 20:49:16 2019 -0800 Correct k vectors for nodal case src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 7fbeff30dbde4e5f6caa53b060e6fd2baf633d7a Author: Luca Fedeli Date: Tue Feb 19 18:22:32 2019 +0100 Added uniform and exp distributions in BW QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.h QED_module_test/src/main.cpp commit 89b380fdf0b862aa0870dbcdef7da37d7767af6a Author: Luca Fedeli Date: Tue Feb 19 18:06:35 2019 +0100 Added some notes QED_module_test/multi_physics/src/NOTES commit 1dd8e2dd4366608fd93756e34a3a3fb82d691c10 Author: Luca Fedeli Date: Tue Feb 19 17:11:29 2019 +0100 Added jupyter notebook to save thoughts concerning Breit Wheelr methods QED_module_test/.ipynb_checkpoints/companion_notebook-checkpoint.ipynb QED_module_test/companion_notebook.ipynb commit 8c54463b6a85418096c0c8126a415476c3082c19 Author: Luca Fedeli Date: Tue Feb 19 14:46:38 2019 +0100 Corrected bugs and added tests in mainfile QED_module_test/multi_physics/src/quadrature.cpp QED_module_test/src/main.cpp commit b259f415aa5c5cbb3de6845490f06b6bae6462da Author: Luca Fedeli Date: Tue Feb 19 10:50:14 2019 +0100 Added quadrature from boost library QED_module_test/CMakeLists.txt QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/src/quadrature.cpp QED_module_test/multi_physics/src/quadrature.h commit dcb01a6a1425e04c8eb8ed06e417a86e19e0da15 Author: Luca Fedeli Date: Tue Feb 19 10:23:31 2019 +0100 refactoring QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/src/special_functions.cpp QED_module_test/multi_physics/src/special_functions.h QED_module_test/src/main.cpp commit 369e8007bcf32b8f941d7c7e492f7792936518dd Author: Luca Fedeli Date: Tue Feb 19 10:19:37 2019 +0100 Added test for special functions and corrected bug QED_module_test/multi_physics/src/modified_bessel_functions.cpp QED_module_test/src/main.cpp commit 704637fe641927e87526168f4dc3f753b206a4d1 Author: Luca Fedeli Date: Tue Feb 19 10:04:49 2019 +0100 Added dump_file to store quick output for debug purposes QED_module_test/src/main.cpp commit cafe43402e913049aeffef88178b614f87b0dfd9 Author: Luca Fedeli Date: Mon Feb 18 18:01:45 2019 +0100 corrected bug QED_module_test/multi_physics/src/modified_bessel_functions.cpp commit 3f20223034ed6ebf2a812bf1ec819456415cd3ca Author: Luca Fedeli Date: Mon Feb 18 17:48:54 2019 +0100 Added small README file QED_module_test/README commit 32d32987202aca2f9309256eb98b52a51babb35a Author: Luca Fedeli Date: Mon Feb 18 17:45:26 2019 +0100 planning to use boost (if available) to calculate integrals QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/src/quadrature.cpp QED_module_test/multi_physics/src/quadrature.h commit b3d75bad4154dad5b9efff8206f6ad5046ca90f0 Author: Luca Fedeli Date: Mon Feb 18 17:10:31 2019 +0100 folder restructuring QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/src/chi_calc_functions.cpp QED_module_test/multi_physics/src/chi_calc_functions.h QED_module_test/multi_physics/src/commons.h QED_module_test/multi_physics/src/landau_lifshitz.cpp QED_module_test/multi_physics/src/landau_lifshitz.h QED_module_test/multi_physics/src/main.cpp QED_module_test/multi_physics/src/modified_bessel_functions.cpp QED_module_test/multi_physics/src/modified_bessel_functions.h QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/src/nonlin_breit_wheeler_engine.h commit 193a711db16fabd578a8990fed0e1c2c2efafc6f Author: Luca Fedeli Date: Mon Feb 18 16:49:02 2019 +0100 bugfixig (check normalization convetions!) QED_module_test/multi_physics/chi_calc_functions.h QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/multi_physics/src/main.cpp QED_module_test/src/leptons.cpp commit acfb7bb0cf318df7295c73dd66ed6da0aa358ddc Author: Luca Fedeli Date: Mon Feb 18 16:01:36 2019 +0100 Added functions to calculate chi for photons and leptons (to test) QED_module_test/multi_physics/chi_calc_functions.cpp QED_module_test/multi_physics/chi_calc_functions.h QED_module_test/multi_physics/commons.h QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/multi_physics/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/nonlin_breit_wheeler_engine.h QED_module_test/src/main.cpp commit 914686580049da440b4e1b24868b36d6b368a7d5 Author: Luca Fedeli Date: Mon Feb 18 14:35:07 2019 +0100 Mainly bugfixing QED_module_test/multi_physics/chi_calc_functions.h QED_module_test/multi_physics/commons.h QED_module_test/src/main.cpp commit 56ae5eef1138b9a28b08b6cd56dd0632ad7c95e2 Author: Luca Fedeli Date: Mon Feb 18 12:31:31 2019 +0100 Added some physical constants QED_module_test/multi_physics/commons.h commit 7f18930afc65eab32aaecc088d3db55aaf160c5c Author: Luca Fedeli Date: Mon Feb 18 12:01:38 2019 +0100 Added enumerator with particle types QED_module_test/multi_physics/commons.h commit 6ab1f945c3e514c0c83aaeefde60fd643921f637 Author: Luca Fedeli Date: Mon Feb 18 11:55:46 2019 +0100 Now using Mersenne Twister 64 bit RNG (should use 64 bit numbers) QED_module_test/multi_physics/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/nonlin_breit_wheeler_engine.h QED_module_test/src/main.cpp commit be4587941ed58417f2237864e774761769abb036 Author: Luca Fedeli Date: Mon Feb 18 11:02:32 2019 +0100 Prepared (empty) source files for nonlinear breit wheeler QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/chi_calc_functions.cpp QED_module_test/multi_physics/chi_calc_functions.h QED_module_test/multi_physics/nonlin_breit_wheeler_engine.cpp QED_module_test/multi_physics/nonlin_breit_wheeler_engine.h commit 579680abb06f0fd4e41d133fc5a275455e78e050 Author: Luca Fedeli Date: Mon Feb 18 10:46:56 2019 +0100 Added special functions from boost if C++17 is not available QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/modified_bessel_functions.cpp QED_module_test/multi_physics/modified_bessel_functions.h commit 70b19bb60f479ebff9bdc6d4fec2b760356ee12e Author: Luca Fedeli Date: Fri Feb 15 16:07:09 2019 +0100 added compile time checks on numerical types sizes QED_module_test/multi_physics/commons.h commit 10dfaf6c6d5290e3ef096eb307d5f1728e52e346 Author: Luca Fedeli Date: Fri Feb 15 15:58:14 2019 +0100 code restructuring QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/commons.h QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/multi_physics/landau_lifshitz.h QED_module_test/multi_physics/modified_bessel_functions.cpp QED_module_test/multi_physics/modified_bessel_functions.h QED_module_test/src/commons.h QED_module_test/src/electrons.cpp QED_module_test/src/leptons.cpp QED_module_test/src/leptons.h QED_module_test/src/main.cpp QED_module_test/src/photons.cpp QED_module_test/src/photons.h QED_module_test/src/positrons.cpp QED_module_test/src/species.cpp QED_module_test/src/species.h commit b6375bc67c27adb9064ca2799932f239891adaeb Author: Luca Fedeli Date: Fri Feb 15 10:34:13 2019 +0100 Some minor modifications QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/multi_physics/landau_lifshitz.h QED_module_test/multi_physics/modified_bessel_functions.cpp commit bb43c930b62976f926319f6857d475faa00b03e6 Author: Luca Fedeli Date: Fri Feb 15 09:06:09 2019 +0100 Added possibility to obtain reference to raw species data QED_module_test/src/species.cpp QED_module_test/src/species.h commit 14727892d3f6a36df33f6b987b7a4d6170ae508e Author: Luca Fedeli Date: Thu Feb 14 15:46:24 2019 +0100 Done initiali work for modified bessel functions (from librqry if C++17) QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/modified_bessel_functions.cpp QED_module_test/multi_physics/modified_bessel_functions.h commit 1ccc7a603c6dbdc7211118cceab245db2554a4cc Author: Luca Fedeli Date: Thu Feb 14 15:33:08 2019 +0100 Correct bug QED_module_test/multi_physics/commons.h QED_module_test/src/species.cpp commit 3842c428003ffdc341705a9a8324b6805bdb8da8 Author: Luca Fedeli Date: Thu Feb 14 14:23:41 2019 +0100 Added possibility to remove particles QED_module_test/src/species.cpp QED_module_test/src/species.h commit a3079a2915d667fe31c61d79b866c65a07bf23db Author: Luca Fedeli Date: Thu Feb 14 14:11:41 2019 +0100 Corrected bug in LLRR pusher QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/src/main.cpp commit 6d74eeb8683cc4bdf0bc074e26d7bc2ceec3cc05 Author: Luca Fedeli Date: Thu Feb 14 11:46:43 2019 +0100 Corrected a bug QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/src/leptons.cpp commit e736d610359a774a91ea1ec62391d3cfc634be1d Author: Luca Fedeli Date: Thu Feb 14 11:43:49 2019 +0100 Added LLRR pusher (to be tested) QED_module_test/multi_physics/commons.h QED_module_test/multi_physics/landau_lifshitz.cpp commit dd738b989d16a3ca9c9868c629c062bd41bdbef5 Author: Luca Fedeli Date: Thu Feb 14 10:39:45 2019 +0100 Easier debug of textual output (e.g. with gnuplot) QED_module_test/src/main.cpp QED_module_test/src/species.cpp QED_module_test/src/species.h commit e8880675a5131fd4aa3f1c7a4eeab40b3c5898e4 Author: Luca Fedeli Date: Thu Feb 14 10:12:13 2019 +0100 Commented out textual output QED_module_test/src/main.cpp commit ffc934f55b921b3e89e1f4b279d7c0f639db53f7 Author: Luca Fedeli Date: Wed Feb 13 17:57:40 2019 +0100 Some work done to add LL pusher replacement (still to implement) QED_module_test/CMakeLists.txt QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/commons.h QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/multi_physics/landau_lifshitz.h QED_module_test/src/commons.h QED_module_test/src/electrons.cpp QED_module_test/src/leptons.cpp QED_module_test/src/leptons.h QED_module_test/src/main.cpp QED_module_test/src/photons.cpp QED_module_test/src/photons.h QED_module_test/src/positrons.cpp QED_module_test/src/species.cpp QED_module_test/src/species.h commit 9b867de65ac051ef396e9408579f73e792a28388 Author: Luca Fedeli Date: Wed Feb 13 15:43:42 2019 +0100 Some refactoring QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/commons.h QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/multi_physics/landau_lifshitz.h commit a9ee775495c9fc147aa5d1a738a8fe57b14f9b85 Author: Luca Fedeli Date: Wed Feb 13 14:05:35 2019 +0100 added library folder in cmake project QED_module_test/CMakeLists.txt QED_module_test/multi_physics/CMakeLists.txt QED_module_test/multi_physics/landau_lifshitz.cpp QED_module_test/multi_physics/landau_lifshitz.h QED_module_test/src/main.cpp commit 1ddfa3dcb2f0b9e11823ae69e6ffd320bdcbf874 Author: Luca Fedeli Date: Wed Feb 13 11:37:55 2019 +0100 Added optical_depth component to particles QED_module_test/CMakeLists.txt QED_module_test/src/species.cpp QED_module_test/src/species.h commit 72ce7828bdd233755e5c34a9015dff52ddcde201 Author: Luca Fedeli Date: Tue Feb 12 18:05:31 2019 +0100 corrected cumbersome syntax QED_module_test/src/main.cpp commit 2d7e3735d0aae67d9cfc6f764e226ff69ce90a98 Author: Luca Fedeli Date: Tue Feb 12 18:03:20 2019 +0100 Enforce C++11 QED_module_test/CMakeLists.txt commit 4d398129d7f69b2973c22fce55379a57b7af76b7 Author: Luca Fedeli Date: Mon Feb 11 17:11:42 2019 +0100 Created simple testbed program to ease the development of QED module. QED_module_test/CMakeLists.txt QED_module_test/src/commons.h QED_module_test/src/electrons.cpp QED_module_test/src/electrons.h QED_module_test/src/leptons.cpp QED_module_test/src/leptons.h QED_module_test/src/main.cpp QED_module_test/src/photons.cpp QED_module_test/src/photons.h QED_module_test/src/positrons.cpp QED_module_test/src/positrons.h QED_module_test/src/species.cpp QED_module_test/src/species.h commit da5332800e659fbf18bf5aa34043ae7148c60b8a Author: Luca Fedeli Date: Fri Feb 8 09:03:05 2019 +0100 Prepared source file for special functions (uses library for C++17) src/multi_physics/breit_wheeler/breit_wheeler.h src/multi_physics/special_functions.hpp commit a773ea5f8b777cd2fc76787f4176d05257e6b54d Merge: d2ff4f67 8fbaf116 Author: Jean-Luc Vay Date: Thu Feb 7 16:03:24 2019 +0000 Merged in generate_miniapp (pull request #171) Generate miniapp Approved-by: Guillaume Blaclard commit d2ff4f6723a66f35416f7c43301a8021c42377c8 Merge: 1ac7686e dff4e8e6 Author: kallala haythem Date: Thu Feb 7 16:02:40 2019 +0000 Merged in fix_config_and_doc (pull request #192) fixing config and doc commit a897a497498fd485c43e377ee89924515f59c48d Author: Luca Fedeli Date: Thu Feb 7 16:03:30 2019 +0100 Some more work to prepare Breit Wheeler module src/multi_physics/breit_wheeler/breit_wheeler.cpp src/multi_physics/breit_wheeler/breit_wheeler.h src/multi_physics/breit_wheeler/breit_wheeler_wrapper.h src/multi_physics/common_types.h commit a0881589a406aa989e17af7dad5d946299734e3f Author: Luca Fedeli Date: Thu Feb 7 15:21:21 2019 +0100 Reorganized previously added C++ code Makefile src/multi_physics/breit_wheeler/breit_wheeler.h src/multi_physics/breit_wheeler/breit_wheeler_wrapper.cpp commit 7b47071614179b441e377ad545dda0a6f98b6ef7 Author: Luca Fedeli Date: Thu Feb 7 14:43:17 2019 +0100 encapsulated dummy C++ function into namespace src/multi_physics/breit_wheeler/breit_wheeler.cpp src/multi_physics/breit_wheeler/breit_wheeler.h commit 7864cec20f435e5c4bb4a1c466b5244c5146c1c8 Author: Luca Fedeli Date: Thu Feb 7 14:03:43 2019 +0100 Added C++ dummy function into code Makefile src/main.F90 src/multi_physics/breit_wheeler/breit_wheeler.cpp src/multi_physics/breit_wheeler/breit_wheeler.h src/multi_physics/breit_wheeler/breit_wheeler_wrapper.hpp commit dff4e8e657dd8a3dd410d1b502a8297d9f99e2ef Author: haithem kallala Date: Tue Feb 5 18:32:27 2019 +0100 adding a boolean flag in configure to detect p3dfft, also detects if p3dfft_dir and fftw_dir are the same to avoid redunduncy configure commit d33b452a4861e9e1fc5e2e27147c51144eafb342 Author: haithem kallala Date: Tue Feb 5 17:55:30 2019 +0100 fixing config and doc Installation_doc/Python/INSTALL_PICSAR_HYBRID_SPECTRAL.md configure commit 8fbaf11671dd7f17aee6ea4363cce8bfaf7ee5b1 Author: Jean-Luc Vay Date: Thu Jan 31 12:12:07 2019 -0800 Enable use of tiling when not optimized. utils/generate_miniapp.py commit 1ac7686e202e8036098183f88d425c51c547eced Author: Remi Lehe Date: Wed Jan 30 15:52:17 2019 -0800 Fix spacing on PICSAR Makefile commit 161d94dd7d8df39a0c151be3be3890d3bdb6e2eb Merge: 5e926d8b 7589ce2c Author: Maxence Thevenet Date: Tue Jan 29 00:57:13 2019 +0000 Merged in vay_pusher_gpu (pull request #191) Port Vay pusher to GPU commit 7589ce2cc675fba632bb01a73062bc9322fc8442 Author: Maxence Thevenet Date: Mon Jan 28 19:51:05 2019 -0500 add openacc pragmas to port Vay pusher to GPU src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 commit 5e926d8bb280e71e100ee92768ae0da1a8db209f Merge: e60541fb aaaad7b9 Author: Remi Lehe Date: Wed Jan 23 15:13:39 2019 +0000 Merged in nodal_gather (pull request #189) Implement nodal option for field gathering Approved-by: Jean-Luc Vay Approved-by: Henri Vincenti commit e60541fb75af88c4f379b03565ba894738e65c79 Merge: 61071798 69997a77 Author: Remi Lehe Date: Wed Jan 23 15:13:13 2019 +0000 Merged in clean_logical (pull request #188) Use the type LOGICAL(lp) consistently across the whole code commit 69997a776a28471cab49133d2895c59a746f6deb Author: Remi Lehe Date: Fri Jan 18 06:30:59 2019 -0800 Small corrections src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 commit aaaad7b9dbd61762aa426339ae48a9f77c745257 Author: Remi Lehe Date: Fri Jan 18 06:30:59 2019 -0800 Small corrections src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 commit c38fedc39fcf891d58f09cee0ffea6b207115ed2 Author: Remi Lehe Date: Thu Jan 17 16:20:56 2019 -0800 Fix some additional of `stagger_shift` by hand src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 commit 38cedfd880077e9db114c6d09a684d76c12d1e62 Author: Remi Lehe Date: Thu Jan 17 13:04:04 2019 -0800 Use stagger_shift in calculation of cell index and residual position src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 commit 359df3f83b54e87363156ccd3f62dde907d01a42 Author: Remi Lehe Date: Thu Jan 17 13:02:08 2019 -0800 Adapt field gathering managers src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 4444617ba47e008beff2b43b618ca37ac5b18c3c Author: Remi Lehe Date: Thu Jan 17 12:54:49 2019 -0800 Change interface of gathering functions src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 commit f0ed5698d1626a2b47e75ac9be186914347de315 Author: Remi Lehe Date: Thu Jan 17 10:47:25 2019 -0800 Adapt coverage tests Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_test.F90 commit 9054191239124fed3da965df07bfa62df8ce1061 Author: Remi Lehe Date: Thu Jan 17 12:46:33 2019 -0800 Correct MPI_LOGICAL Acceptance_testing/Gcov_tests/maxwell_2d_test.F90 Acceptance_testing/Gcov_tests/maxwell_3d_test.F90 commit 9005b085886278b8d9eb1c94562d6e6f891c0aa3 Author: Remi Lehe Date: Thu Jan 17 11:42:52 2019 -0800 Use type LOGICAL(lp) consistently across the whole code Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_3d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/maxwell_2d_test.F90 Acceptance_testing/Gcov_tests/maxwell_3d_test.F90 Acceptance_testing/Gcov_tests/rho_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 commit 61071798eed8902a200dba3a6f42c4cd19ac6c7b Author: Remi Lehe Date: Thu Jan 17 11:29:49 2019 -0800 Rewrite USE/ONLY in a deterministic, sorted way src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/housekeeping/load_balancing.F90 src/housekeeping/sorting.F90 src/init_external.F90 src/ios/simple_io.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/kin_energy.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/submain.F90 utils/fortran_parsers/use_module_only.py commit fa23c48168f95f33ab331ae9246f968c3e5d62e6 Author: Jean-Luc Vay Date: Wed Jan 16 19:57:09 2019 -0800 Further split the charge and current deposition; changed the defaults to produce small version of PICSARlite. utils/generate_miniapp.py commit 506b5f9e869763ca66822f1c35910b1fd79d6ae6 Author: Jean-Luc Vay Date: Wed Jan 16 19:55:07 2019 -0800 Changed file format from Windows to Unix. utils/generate_miniapp.py commit 64b23c524406f44c991ae2f102f764b507f04140 Author: Henri VINCENTI Date: Wed Jan 16 17:45:08 2019 +0000 INSTALL_PICSAR_HYBRID_SPECTRAL.md edited online with Bitbucket Installation_doc/Python/INSTALL_PICSAR_HYBRID_SPECTRAL.md commit fe2f68c06a60d713015cb608c43324f4fd8b0ae2 Merge: 78ff22bd f1cff6cc Author: Henri VINCENTI Date: Wed Jan 16 17:41:51 2019 +0000 Merged in correct_doc_and_configure (pull request #187) improving doc concerning full_pxr mode Approved-by: Henri VINCENTI commit f1cff6cc15fb711bda64a2b1ac0ffd50200e25ad Author: Henri VINCENTI Date: Wed Jan 16 17:41:32 2019 +0000 INSTALL_PICSAR_HYBRID_SPECTRAL.md edited online with Bitbucket Installation_doc/Python/INSTALL_PICSAR_HYBRID_SPECTRAL.md commit 894b92dec652a4c6aeaa2943b0403f39dd37dbfb Author: Haithem Kallala Date: Wed Jan 16 18:34:58 2019 +0100 improving doc concerning full_pxr mode Installation_doc/Python/INSTALL_PICSAR_HYBRID_SPECTRAL.md configure utils/forthon_parser/forthon_parser_pxr_spectral_hybrid.py commit 78ff22bdbc207e3b37202e3eaa364f9cb42b9fd0 Merge: 8d53cc3f b7a6c0df Author: Maxence Thevenet Date: Mon Dec 10 18:05:10 2018 +0000 Merged in esirkepov_2d (pull request #186) Ported Esirkepov 2d to GPU + optimized commit b7a6c0df5116d9b136701103a41b80e439857d97 Author: Maxence Thevenet Date: Fri Dec 7 17:58:39 2018 -0500 fcompare OK for order 1, 2, 3. timers show good speedup. cleaned. src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit d30dc30f641976459e1e981f529cb1c2f0184d3f Author: Maxence Thevenet Date: Fri Dec 7 16:06:11 2018 -0500 esirkepov 2d order 2 and 3 ported to GPU, without further optimization yet src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit a06c2c07bc971d59193fae8e44ac27c093309321 Author: Maxence Thevenet Date: Fri Dec 7 13:19:37 2018 -0500 ported order 1 to GPU without optimization. fcompare fields successful src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit ecea7b2f892b1bfea669e2956f9533b96da87e87 Merge: df9ece72 8d53cc3f Author: Guillaume Blaclard Date: Fri Dec 7 11:33:44 2018 +0100 Merge branch 'master' into generate_miniapp Conflicts: Makefile src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit df9ece724b59d8b1813bd296f6b0637dc26d7912 Author: Guillaume Blaclard Date: Fri Dec 7 11:03:10 2018 +0100 Add P. McCorquodale extra flags to generate_miniapp utils/generate_miniapp.py commit 8d53cc3f9b7a003bfd07b3e25888c033f401d7c7 Author: Remi Lehe Date: Mon Nov 26 17:06:36 2018 -0800 Remove out-of-bound in spectral initialization src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit b9162faa503f3495bb45530c9aa23b5a27077e81 Merge: 014196e6 9dc2bb49 Author: Maxence Thevenet Date: Mon Nov 26 19:49:26 2018 +0000 Merged in gpu_deposition (pull request #175) Port Esirkepov deposition to GPU commit 014196e6e5cc4f3ec15c5673eb0acafc973378f7 Merge: b46d1d52 f88371a0 Author: Remi Lehe Date: Mon Nov 26 16:39:54 2018 +0000 Merged in remilehe/picsar/fix_out_of_bounds (pull request #177) Fix out-of-bound in array `is_usefull` commit b46d1d52478c8648ba9b92f30a8e5052e4d8073b Merge: 1aae0c6c 85a606e9 Author: Remi Lehe Date: Mon Nov 26 16:38:52 2018 +0000 Merged in push_2d (pull request #183) Implement 2D push with OpenACC directives commit 1aae0c6cfbef7592af55746c1207b9bbab7ec27a Merge: 8b13a768 a0852baf Author: Remi Lehe Date: Mon Nov 26 16:38:17 2018 +0000 Merged in scalar_gathering_2d (pull request #184) Add 2D scalar gathering functions commit 8b13a768d44ac761b7cf66203a8843a325293ff7 Merge: a922a68f 52ef9f1a Author: Remi Lehe Date: Mon Nov 26 16:37:56 2018 +0000 Merged in 2d_direct_deposition (pull request #185) Add 2D scalar direct deposition functions commit a922a68f70bce845dc1e5f8306b10e2f75b0e5b4 Merge: d8bfa6dd fab27ee8 Author: Remi Lehe Date: Tue Nov 20 17:18:18 2018 +0000 Merged in gpu (pull request #176) Port part of the PICSAR functionalities to GPU commit 52ef9f1ae9d8ef1640836e4039854ffbc2c35905 Author: Remi Lehe Date: Fri Nov 16 11:41:15 2018 -0800 Include new file in Python sources utils/forthon_parser/forthon_parser.py commit 85a606e90dd78461caa74aff8b3c7c4959d58a5b Author: Remi Lehe Date: Tue Nov 13 11:49:08 2018 -0800 Implement 2D push with OpenACC directives src/particle_pushers/boris_pusher/boris_2d.F90 commit a0852baf02dcd3012bd43ed37bd39c7199934cec Author: Remi Lehe Date: Tue Nov 13 11:48:57 2018 -0800 Update the function names for field gathering src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 commit 79813c9922ebfe938bdf9b9fbccd1d3eccbdcc5d Author: Remi Lehe Date: Mon Nov 12 15:36:36 2018 -0800 Update files for WarpX src/Make.package src/particle_deposition/current_deposition/direct/direct_current_deposition_2d.F90 commit 6ccc6f57d2119a6eede69f408f89b351ef7ec1ce Author: Remi Lehe Date: Mon Nov 12 15:31:05 2018 -0800 Correct compilation bugs src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_2d.F90 commit 5ce2d7aa37db583de056243970eeba053c6fb1c3 Author: Remi Lehe Date: Mon Nov 12 15:21:29 2018 -0800 Update Makefiles Makefile Makefile_profiling commit 7798b9ec5852d995c25e6f00e6c46c0a7064bad7 Author: Remi Lehe Date: Mon Nov 12 15:14:44 2018 -0800 Started implementing 2D direct deposition src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_2d.F90 commit 58ec214a031e98bce7763d5bcdd98f503abcbb65 Author: Remi Lehe Date: Tue Nov 13 10:50:01 2018 -0800 Update field gathering manager src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/field_gathering_manager_2d.F90 commit 70c0205e7c5aec31f25b8e078e7385644c61fc48 Author: Remi Lehe Date: Tue Nov 13 10:25:21 2018 -0800 Update gathering functions src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 commit 59b40f53272aa014db39b3fa824809073e1f887a Author: Remi Lehe Date: Mon Nov 12 20:10:21 2018 -0800 Implement scalar gathering functions src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 commit ee3c68593c07e537b8d5120ffa9d100b858575f5 Author: Remi Lehe Date: Mon Nov 12 17:06:53 2018 -0800 Start implementing scalar field gather src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 commit f88371a0db21e732c37fb15d7186e1ffc484b87a Author: Remi Lehe Date: Tue Oct 30 11:57:37 2018 -0700 Fix out-of-bound in array is_usefull src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit fab27ee8afd24b43c65c2f685ac9043446fea137 Author: Remi Lehe Date: Tue Oct 30 10:26:32 2018 -0700 Cosmetic modification src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 9dc2bb49e4dca954eb40227d1730a8a291bfd763 Author: Maxence Thevenet Date: Thu Oct 25 12:47:49 2018 -0400 comments to re-run automated tests src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit c88996b5d4ab3b8f01c02619a74a8298c14c1841 Merge: 7a2c37c9 ac7751c8 Author: Maxence Thevenet Date: Thu Oct 25 08:57:50 2018 -0400 Merge branch 'gpu' into gpu_deposition commit ac7751c849af5a513bde2dd1b7cbbe22ae2b2f94 Author: Maxence Thevenet Date: Thu Oct 25 08:55:43 2018 -0400 Revert "esirkepov deposition order 1 for GPU with OpenACC pragmas" This reverts commit 4b2341cd5921c37f4fc27283629d11ce0a19690a. src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 utils/subroutine_generators/write_current_dep_esirkepov_openacc_3d.py commit 479f470ec3a3c4667c1671eb4f91b3de04cc459b Author: Maxence Thevenet Date: Thu Oct 25 08:55:05 2018 -0400 Revert "minor addition" This reverts commit f1c676120f90bf9a0dbe55c15298e76202223e91. src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 utils/subroutine_generators/write_current_dep_esirkepov_openacc_3d.py commit 7a2c37c953d637ed8d553930946e5b7abd6809f5 Author: Maxence Thevenet Date: Thu Oct 25 08:46:48 2018 -0400 remove some variable init from main loop to accelerate kernel src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit f38e82e76c03c48f802ad92d02796d37694673a8 Author: Maxence Thevenet Date: Wed Oct 24 22:05:19 2018 -0400 fixed bug in CD order 2 and 3. Now tested and working. src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit 6a62d1a3dc4a749175163295a1b717b16162b275 Author: Maxence Thevenet Date: Wed Oct 24 19:04:34 2018 -0400 order 3 deposition implemented and compiles src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit 032c0555b30187224f7b63d6dee3c4fd691cd135 Author: Maxence Thevenet Date: Wed Oct 24 18:50:10 2018 -0400 typos. now it compiles. src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit 9536abb7684ba8889f4ca1dd98c207bb0a042fe1 Author: Maxence Thevenet Date: Wed Oct 24 18:48:04 2018 -0400 esirkepov order 2 not tested src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit e5452f9b6701bc8b8c1d8391730982c74e7c08e1 Author: Maxence Thevenet Date: Wed Oct 24 18:32:29 2018 -0400 optimized esirkepov deposition 3d order 1. Reduce private arrays was tested and works. Other stuff not tested src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit d8bfa6dd1fef60e1c6414c9276e2011ab41481c6 Merge: 9250d8e8 2220593b Author: Henri VINCENTI Date: Wed Oct 24 21:18:40 2018 +0000 Merged in picsar_freeze_part (pull request #174) Picsar freeze part commit 5017c304911aa5d8279d055ffec3eb88cfa48e42 Author: Maxence Thevenet Date: Wed Oct 24 14:22:36 2018 -0400 linearized Esirkepov order 1. Doesnt accelerate src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit 2220593bfe21497900138cfa9d97547b6fdb1412 Author: Henri VINCENTI Date: Wed Oct 24 19:35:52 2018 +0200 Added routine to freeze particles from python src/parallelization/tiling/tiling.F90 commit 905c49a5bffd81c23f08bb1e1b934825c47dfcdc Author: Henri VINCENTI Date: Wed Oct 24 16:44:33 2018 +0200 Added flag lfreeze in picsar that stops gathering fields and pushing particles if activated src/field_gathering/field_gathering_manager_3d.F90 src/modules/modules.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit f1c676120f90bf9a0dbe55c15298e76202223e91 Author: Maxence Thévenet Date: Tue Oct 23 17:30:08 2018 -0400 minor addition src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 utils/subroutine_generators/write_current_dep_esirkepov_openacc_3d.py commit 4b2341cd5921c37f4fc27283629d11ce0a19690a Author: Maxence Thévenet Date: Tue Oct 23 17:26:18 2018 -0400 esirkepov deposition order 1 for GPU with OpenACC pragmas src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 utils/subroutine_generators/write_current_dep_esirkepov_openacc_3d.py commit 9250d8e877e20310ab58a3bf904a5dccdb367ab0 Author: Maxence Thévenet Date: Tue Oct 23 15:08:11 2018 -0400 fix bug in esirkepov deposition parser utils/subroutine_generators/write_current_dep_esirkepov_vect_3d.py commit 93f78de020b1620677b4489c0b59fde2fdf5f173 Author: Maxence Thévenet Date: Tue Oct 23 15:06:53 2018 -0400 fix bug in esirkepov deposition parser utils/subroutine_generators/write_current_dep_esirkepov_vect_3d.py commit 63a0df0b55ceae40c1f08217f5fec105972aa1ae Merge: f175dc13 b4cef9c4 Author: Remi Lehe Date: Sun Oct 21 19:16:15 2018 +0000 Merged in remilehe/picsar/gathering (pull request #173) Add OpenACC directives for 3d scalar gathering functions commit b4cef9c4e0dde6cec8dcd687b47f558a486db6d1 Author: Remi Lehe Date: Sun Oct 21 08:48:15 2018 -0700 Add OpenACC directives for 3d scalar gathering functions src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 commit f175dc135e20885d2eb00ea715738e2a0f47a5f8 Merge: dade8435 9ba034dc Author: Remi Lehe Date: Sun Oct 21 14:38:25 2018 +0000 Merged in remilehe/picsar/3d_scalar_deposition (pull request #172) Add OpenACC directives for the 3D scalar deposition routines commit 9ba034dc45b5b62aabf7c01a3c23614c8e16f67a Author: Remi Lehe Date: Sun Oct 21 07:11:38 2018 -0700 Add OpenACC directives for 3D scalar charge deposition src/particle_deposition/charge_deposition/charge_deposition_3d.F90 commit bfe306037be135fba94002d6b5ecac29e59ab655 Author: Remi Lehe Date: Sun Oct 21 07:11:08 2018 -0700 Add OpenACC directives in 3D scalar current deposition src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 3ce0d7aecfc8aeb2969fa79b8568bce8174a7c33 Author: Jean-Luc Vay Date: Wed Oct 17 09:59:52 2018 -0700 Fixed alignments in scalar subroutines for readability. src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 903273ff7511f71dde5cd9bc5c5f2b8bb36910cf Author: haithem_kallala Date: Wed Oct 17 14:56:08 2018 +0200 trying to fix shippable tests (don't know why it bugs right now)x Acceptance_testing/Python_tests/test_radiation_reaction/test_rr_synchrotron_LL.py commit b2c6e250d1b2ccbb386c63e23fe728fd40cd372f Author: haithem_kallala Date: Wed Oct 17 14:19:31 2018 +0200 fixing warp tests which use pxr antenna by adding two additional pids when usin pxr in order to support pxr antenna Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py Acceptance_testing/Python_tests/test_drifted_plasmas/test_drifted_plasmas.py commit a78d779938416f61e3d362ea71313bd9e8076776 Author: haithem_kallala Date: Wed Oct 17 12:59:51 2018 +0200 trying to fix shippable tests Makefile commit 0fe8b20ebfc2097315cd68cccb6d32090b7f8f18 Author: haithem_kallala Date: Wed Oct 17 11:32:23 2018 +0200 correction a typo emerging from conflict fixing src/field_solvers/Maxwell/yee_solver/yee.F90 commit 93efb65dfff95e460770b6093cfd32807dafe3b6 Merge: 4ae1456d 708fc913 Author: haithem_kallala Date: Wed Oct 17 10:29:59 2018 +0200 Merge branch 'master' into generate_miniapp commit 4ae1456dd191f434bd47a551168d6df3b8e6f2e9 Author: Jean-Luc Vay Date: Tue Oct 16 17:29:42 2018 -0700 Input deck example for PICSARlite. examples/example_decks_fortran/homogeneous_plasma_lite.pixr commit 35ce74f183869cffe383dfdb96ac8995668600ce Author: Jean-Luc Vay Date: Tue Oct 16 17:28:26 2018 -0700 Added documentation for PICSARlite. README.md commit 5c5023ad3d3279ecbdec712df3db4b2aeba3a8ab Author: Jean-Luc Vay Date: Tue Oct 16 17:28:03 2018 -0700 Moved printing of IO time inside innermost if statement so that it prints only when the dump is executed. src/ios/simple_io.F90 commit 1e81d530ae01e8bc6b5c0d3bff55d63ecf8c5a34 Author: Jean-Luc Vay Date: Tue Oct 16 17:27:01 2018 -0700 Some tweaking. utils/generate_miniapp.py commit dade84350688c40c872355db8423860c5e4cdb05 Author: Andrew Myers Date: Mon Oct 15 20:37:46 2018 -0400 also add openacc pragmas to the yee field solver routines. src/field_solvers/Maxwell/yee_solver/yee.F90 commit f12c7856e6f3fda6ce480b5934a34ac744cb8611 Author: Remi Lehe Date: Tue Oct 9 19:38:36 2018 -0700 Add name of functions for C bindings src/filtering/nci_godfrey_corr.F90 commit add72c6cb60340327fe729b645140efc6a96358b Author: Jean-Luc Vay Date: Mon Oct 8 18:35:55 2018 -0700 Separated gather routines into own sections and added missing names of many subroutines. utils/generate_miniapp.py commit 2771b8297d74e28def86553bb7b7fed441992f95 Author: Jean-Luc Vay Date: Mon Oct 8 18:35:14 2018 -0700 Added option to specify the name of the input script in the command line src/initialization/control_file.F90 commit dd65a7585bcea7d8c8e077b0f93f9cfe07980064 Author: Jean-Luc Vay Date: Mon Oct 8 18:33:38 2018 -0700 Removed extra space between 'call' and function name as the miniapp parser does ntot detect them. src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 13c54f86e1be007085ef8798a6fa3d267ee3a9ff Author: Guillaume Blaclard Date: Mon Oct 8 16:34:04 2018 +0200 Add the possibility to manage the interfaces utils/generate_miniapp.py commit 708fc9138d8f765b56f2e0f504bc2356b749fb9a Merge: 3041dd70 7949ca7c Author: Guillaume Blaclard Date: Thu Oct 4 17:18:56 2018 +0000 Merged in adapt_antenna_to_warp (pull request #161) Adapt antenna to warp Approved-by: Jean-Luc Vay Approved-by: kallala NA commit 3bad5116ed36e270c81aaa59beda99c4967c7e3f Author: Andrew Myers Date: Wed Oct 3 13:40:00 2018 -0400 start porting some of the PIC kernels using OpenACC src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 commit 17c9c5a9ec8b503a639dc49115df59bb368bb465 Author: Guillaume Blaclard Date: Tue Oct 2 17:16:18 2018 +0200 Add JL's correction and correct wrong indents utils/generate_miniapp.py commit 7949ca7c0ad7248e5bfa184a5ffb9b8a9706dd9e Author: haithem_kallala Date: Tue Oct 2 15:34:54 2018 +0200 getting rid of some useless modules in pxr antenna src/particle_pushers/laser_pusher_manager_3d.F90 commit 2ca0de6147c877841b171872bddfae950dd7de46 Author: haithem_kallala Date: Tue Oct 2 15:32:17 2018 +0200 adding module only to new antenna src/particle_pushers/laser_pusher_manager_3d.F90 commit 2fe5501e714523838881705f9b6c70fd46784ee9 Author: haithem_kallala Date: Tue Sep 25 21:25:56 2018 +0200 not performing field gathering on antenna particles when field gather and particle pushers are done separetely src/field_gathering/field_gathering_manager_3d.F90 commit f9ec493fd7dc9b1d93cd7f8d72c4df253210dfef Author: haithem_kallala Date: Tue Sep 25 16:56:09 2018 +0200 parallelization of push laser antenna with profile (using omp lib) src/particle_pushers/laser_pusher_manager_3d.F90 commit 426f49503be0b38132296e47fe906f05255bb02a Author: Guillaume Blaclard Date: Tue Sep 25 12:10:31 2018 +0200 Implementation of the Fortran Makefile. It should compile. utils/generate_miniapp.py commit eea621b305b9c057a3052bc3ff09c8333ab444d4 Merge: 691b0260 0bcca990 Author: Guillaume Blaclard Date: Fri Sep 21 18:02:24 2018 +0200 Merge branch 'generate_miniapp' of https://bitbucket.org/berkeleylab/picsar into generate_miniapp commit 691b0260e5c58a5980d78ef3f8109a84076bab3b Author: Guillaume Blaclard Date: Fri Sep 21 18:00:42 2018 +0200 Fix last bugs. It compiles with python! utils/generate_miniapp.py commit 3041dd7071591d1819c896311d82a729128bceda Merge: 922ba712 e8f1370a Author: Remi Lehe Date: Fri Sep 21 15:44:34 2018 +0000 Merged in fix_f (pull request #170) Partial implementation of divergence cleaning Approved-by: Henri VINCENTI commit e8f1370acf468687e72d7cdff9450941fe33c403 Author: Remi Lehe Date: Fri Sep 21 06:35:16 2018 -0700 Fix openMP bug src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 commit 0bcca990cba29090b1f356decf0a1756676feb41 Author: haithem kallala Date: Fri Sep 21 13:26:17 2018 +0200 forgotten mpi routine added to routine list utils/generate_miniapp.py commit 78f8114ee6da0334f83fcf63ba11bd5b557ed611 Author: Guillaume Blaclard Date: Fri Sep 21 11:46:01 2018 +0200 Fix bugs and copy the ./configure and MakeFile utils/generate_miniapp.py commit c4f9bc883ea0aeea1a823517b2b5a7ecf489532f Author: Remi Lehe Date: Thu Sep 20 21:53:35 2018 -0700 Correct a few bugs src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit 628aae9afa850508948ab16df4d19d1649e27433 Author: Remi Lehe Date: Thu Sep 20 21:42:51 2018 -0700 Implement push E term for CKC solver src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit 808940ee60b459a37a53eaff66987bd94cd63547 Author: Remi Lehe Date: Thu Sep 20 21:26:00 2018 -0700 Implemented Yee stencil for epush with F src/field_solvers/Maxwell/yee_solver/yee.F90 commit 18693aafbf6ee6585d92b345751d87b71b02c3c6 Author: haithem kallala Date: Thu Sep 20 19:53:54 2018 +0200 trying to fix the generate_mini_app utils/forthon_parser/forthon_parser.py utils/generate_miniapp.py commit 8238d9712c45b945d1981bbc14eef46740ac9809 Author: Guillaume Blaclard Date: Thu Sep 20 18:21:46 2018 +0200 Fix a bug where the routine where wrongly detected if it contains upper case utils/generate_miniapp.py commit a4f92e8cdaaa7fb855063ccaa7767ed8f4c924a4 Author: haithem kallala Date: Thu Sep 20 17:38:35 2018 +0200 added mpi calls but the parser does't detect them utils/generate_miniapp.py commit 001358a5a11db7ae3e80b07bb3af34c99031717b Merge: f427feed 216a2fbc Author: haithem kallala Date: Thu Sep 20 16:34:31 2018 +0200 Merge branch 'generate_miniapp' of bitbucket.org:berkeleylab/picsar into generate_miniapp Conflicts: utils/generate_miniapp.py commit f427feed383128fb20accc5e6becadcbb0260304 Author: haithem kallala Date: Thu Sep 20 16:33:23 2018 +0200 save src/boundary_conditions/field_boundaries.F90 src/submain.F90 utils/generate_miniapp.py commit 216a2fbc66958a6b446a20900a3486b7d60fd4fe Author: Guillaume Blaclard Date: Thu Sep 20 15:53:28 2018 +0200 Add the main.F90 generator utils/generate_miniapp.py commit ddfd864131528cf60ffde4bfad31afcf5ab848cb Author: haithem kallala Date: Thu Sep 20 15:07:14 2018 +0200 saving before testing utils/generate_miniapp.py commit aaf9bceeedbff836c4de672621de17634bc21fb9 Author: haithem kallala Date: Thu Sep 20 14:30:00 2018 +0200 saving (changing lower subroutines to upper subroutines ) src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/modules/modules.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 utils/generate_miniapp.py commit 46cc1164cdc0299c281db4048db7d238a79d6e1f Author: haithem kallala Date: Thu Sep 20 13:48:21 2018 +0200 save 2 utils/generate_miniapp.py commit b15761cf7d9f153d61eb4295f9a51a385b3b31ab Author: haithem kallala Date: Thu Sep 20 13:28:27 2018 +0200 saving utils/generate_miniapp.py commit 6a1c6356cee0bab9ab5f6cb85ed43b76dfd86b90 Author: Guillaume Blaclard Date: Wed Sep 19 11:16:11 2018 +0200 Copy also utils and example in PICSARlite utils/generate_miniapp.py commit 31f77145d8f0f7bc145ecac2149c282b6636f035 Author: Guillaume Blaclard Date: Wed Sep 19 10:54:53 2018 +0200 Matching the formatting of extralines and PICSAR utils/generate_miniapp.py commit 01d0d13ff3d6886c5effa742b022ed8c2a6d3b4d Author: Guillaume Blaclard Date: Tue Sep 18 19:29:53 2018 +0200 Comment and highlight unavailable routines still present in PICSARlite utils/generate_miniapp.py commit 2221cb6b6c0bc87dd4f731709949b3c7f8373c8c Author: Guillaume Blaclard Date: Tue Sep 18 16:50:59 2018 +0200 Remove the "do not parse" and construct the modules and routines differently utils/generate_miniapp.py commit f0f0f7f8e04d6c7ebaf99b6ee7269f7555758672 Author: Guillaume Blaclard Date: Tue Sep 18 12:46:25 2018 +0200 Create a python file, which reconstructs PICSARlite with some routines src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 utils/generate_miniapp.py commit eca5b0bf9c93d212bfb7a2c62aaea4cc40886af8 Merge: 3f0d7571 922ba712 Author: haithem_kallala Date: Mon Sep 17 13:17:00 2018 +0200 Merge branch 'master' into adapt_antenna_to_warp commit 922ba712c0dc3ad77668094cf7ce384a7f6f6238 Merge: 6887cf40 2d4567ca Author: kallala NA Date: Fri Sep 14 16:07:31 2018 +0000 Merged in fix_memory_bottleneck_init_kspace (pull request #169) fixing memory bottleneck in initkspace Approved-by: Henri VINCENTI commit 2d4567ca93999a7461b98adcc30a8b2a09e16b7b Author: haithem_kallala Date: Fri Sep 14 13:46:47 2018 +0200 fixing Makefile Makefile commit 25d6ba68572a818917be057969b8d036255c7de2 Author: haithem_kallala Date: Fri Sep 14 11:02:23 2018 +0200 fixing makefile Makefile commit 5c4f9a6a98e67175f4aaaa022a1e0541c7c3840f Author: haithem kallala Date: Thu Sep 13 19:23:03 2018 +0200 fixing Makefile Makefile commit abc78f8ae69daa7d95911b2e45475b5a5142bfac Author: haithem kallala Date: Thu Sep 13 17:40:41 2018 +0200 adding a comment on merging fields inside fields_bcs src/boundary_conditions/field_boundaries.F90 commit b6c2f391bf097511bba0899552b0385c9a301eca Author: haithem kallala Date: Thu Sep 13 17:38:44 2018 +0200 fixing makefile Makefile commit cc0bec73ae0fed31f0b8fa7a85d29dcb32dbf36f Author: haithem kallala Date: Thu Sep 13 17:17:32 2018 +0200 changing index saving strategy src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 commit 62931a95ae89bdb43f898d3f49ab1cbc5d1c54e0 Author: haithem kallala Date: Wed Sep 12 18:53:38 2018 +0200 enabling shifted pmls starting from guardcells for local solver in picsar src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 src/submain.F90 commit 62dd9e4b162247a5a420f6538daa665ad93ace0c Author: haithem_kallala Date: Sun Sep 2 16:17:24 2018 +0200 fixing configure file configure commit c0eb107821cecb1906496ec78717e6b7a6c3b5b4 Author: haithem_kallala Date: Thu Aug 30 16:38:38 2018 +0200 fixing memory bottleneck in initkspace src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 6887cf40b5ff673e30738a0e389dae5a1ef99470 Merge: 9b6098e0 84280519 Author: kallala NA Date: Mon Aug 27 08:44:06 2018 +0000 Merged in warp_link (pull request #155) new tools for warp commit 9b6098e00e0d7502a261f5f5e842b2cb16fec649 Merge: 8519299e e76ea160 Author: Maxence Thevenet Date: Thu Aug 23 23:11:04 2018 +0000 Merged in float_precision_ckc (pull request #168) appropriate precision for floats in CKC solver commit e76ea1609b519ef740a57f1e3ab716217e7533b5 Author: Maxence Thevenet Date: Mon Aug 20 16:15:18 2018 -0700 appropriate precision for floats in CKC solver src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 commit 842805197c485b2b880608ec1945e2a168f88db6 Author: haithem_kallala Date: Mon Aug 20 13:48:02 2018 +0200 fixing name of guard cells group in init fileo src/initialization/control_file.F90 commit c28edc0ed3bc96eaae51447356d0f97fab0e12ac Author: haithem_kallala Date: Thu Aug 9 18:50:06 2018 +0200 inversing loops in merge to go faster src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit b708a44355f3581c8a266c83fa7c2164e1c872f0 Author: haithem_kallala Date: Thu Aug 9 00:04:51 2018 +0200 deleting redundancy in use modules src/parallelization/mpi/mpi_routines.F90 commit 74c5d42434f6231dd8b5f29133c80b9aab4ccaad Author: haithem_kallala Date: Wed Aug 8 17:22:56 2018 +0200 deleting spaces in use module load_balancing group src/housekeeping/load_balancing.F90 commit e053340adb98778b59bf23ea52177d031c05ae5d Author: haithem_kallala Date: Wed Aug 8 17:22:21 2018 +0200 improving pml coefficients src/submain.F90 commit 58e6ef34edd6bde335d19681ec7f1e68e81eb974 Author: haithem_kallala Date: Wed Aug 8 15:50:04 2018 +0200 renaming full_pxr flag to pxr_spectral_hybrid Installation_doc/Python/INSTALL_PICSAR_HYBRID_SPECTRAL.md Installation_doc/Python/INSTALL_PYTHON_CORI.md Installation_doc/Python/INSTALL_PYTHON_EDISON.md Installation_doc/Python/INSTALL_PYTHON_LINUX.md Installation_doc/Python/INSTALL_PYTHON_MACOS.md configure utils/forthon_parser/forthon_parser_pxr_spectral_hybrid.py commit bfd2d9ae9758ffe5e8e663f2b9020aca314810bc Author: haithem_kallala Date: Tue Aug 7 23:28:18 2018 +0200 deleting an unused function (added previously by me )o src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/main.F90 commit bc68ffd8e89996b02a4e9baa10669422960f81b8 Author: haithem_kallala Date: Tue Aug 7 15:38:03 2018 +0200 adding an extension to doc file Installation_doc/Python/INSTALL_PICSAR_FOR_WARP_FULL_MODE.md commit 9740f84425d1d3916ed6680eb38e014d2e06cace Author: haithem_kallala Date: Tue Aug 7 01:57:02 2018 +0200 fixing small typo examples/example_decks_fortran/tes_pml_2d.pixr commit 8618efd8a04cf2905121f0532f7ba55f74d03abc Merge: 8de193d2 8519299e Author: haithem_kallala Date: Tue Aug 7 01:52:31 2018 +0200 Merge branch 'master' into warp_link fixing merge conflicts and improoving docs on installation of dependencies commit 8519299ec98a2ad4b2f6b224ca369242588386f3 Merge: 734c85b5 21aae4cf Author: kallala NA Date: Sat Aug 4 14:43:01 2018 +0000 Merged in optimized_boosted_frame_diags_for_warp (pull request #166) this branch intends to performs computatoions related to Lorentz transforms(LT) in boostecd_frame diags of warp directly in picsar in order to use multithreading while performing LT. commit 734c85b5c112d0fd4f36f9d17ecd1cb803443120 Merge: d98df37f ba4e0473 Author: Remi Lehe Date: Wed Aug 1 18:43:28 2018 +0000 Merged in module_only (pull request #167) Use the syntax "USE ... , ONLY ..." for modules commit ba4e04736adcdbd29efdce25ac2a4f5b9ea6c623 Author: Remi Lehe Date: Wed Aug 1 08:40:05 2018 -0700 Change files: use syntax "module, only" src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/housekeeping/load_balancing.F90 src/housekeeping/sorting.F90 src/init_external.F90 src/ios/simple_io.F90 src/main.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/kin_energy.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 src/submain.F90 commit 4cda7b5d7dd649670b96ab5097f90461ef69bced Author: Remi Lehe Date: Wed Aug 1 08:36:00 2018 -0700 Fix length of lines utils/fortran_parsers/use_module_only.py commit 21aae4cf5724317454daa8f3d02225c2365822e6 Author: haithem_kallala Date: Tue Jul 31 22:44:57 2018 +0200 small fix (adding comments to LT)yw src/diags/diags.F90 commit da75d53827847d345e38f7f5b05185405fef4af3 Author: Remi Lehe Date: Mon Jul 30 09:29:06 2018 -0700 Handle contains statement utils/fortran_parsers/use_module_only.py commit ce3557a93b00444890dfb8290e9a317f048c1e80 Author: Remi Lehe Date: Mon Jul 30 08:35:04 2018 -0700 Avoid duplicate variables utils/fortran_parsers/use_module_only.py commit 0fb2917b4d5f212bfe4d7d9534dffe96f06b70bd Author: Remi Lehe Date: Mon Jul 30 08:31:44 2018 -0700 Add vtune modules utils/fortran_parsers/use_module_only.py commit 736818e139ef637c6ebad875bb61ba352d7e8186 Author: Remi Lehe Date: Mon Jul 30 08:20:55 2018 -0700 Update FFTW functions utils/fortran_parsers/use_module_only.py commit d21cae315a7dc1139ab9386a9c750d7d67895d95 Author: Remi Lehe Date: Sun Jul 29 15:08:25 2018 -0700 More FFTW functions utils/fortran_parsers/use_module_only.py commit fcbf16d41e43c3c53833932479cd065a9ca3c967 Author: Remi Lehe Date: Sun Jul 29 15:02:55 2018 -0700 Fix spacing for group module src/parallelization/mpi/mpi_routines.F90 commit 60d548a2e655ed016fef856cbc32f1f57d6979d3 Author: Remi Lehe Date: Sun Jul 29 13:07:55 2018 -0700 Better indent utils/fortran_parsers/use_module_only.py commit 0b96e1c5ac3a60a53a74ce4f9b494d9307818a1d Author: Remi Lehe Date: Sat Jul 28 14:39:44 2018 -0700 Explicitly use MPI src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 65a6c032e4d22f0b70c0c265c2219364b4e3d10e Author: Remi Lehe Date: Sat Jul 28 14:35:06 2018 -0700 Better parsing of used modules utils/fortran_parsers/use_module_only.py commit a3cbe21d8280bb9f58cdbe0d2cf161f616ccda1e Author: Remi Lehe Date: Sat Jul 28 14:29:31 2018 -0700 Add FFTW functions utils/fortran_parsers/use_module_only.py commit c920d34e02b25061b5de007e38880b89eb13e9b3 Author: Remi Lehe Date: Sat Jul 28 03:41:34 2018 -0700 Use iso_bindings for `c_ptr` utils/fortran_parsers/use_module_only.py commit cb6af93f87f474ee23ad159625b4b871ef06e0bd Author: Remi Lehe Date: Sat Jul 28 03:22:45 2018 -0700 Better line reconstruction utils/fortran_parsers/use_module_only.py commit 090cd8b5a5047eaeba2867c1252715b45d0861a7 Author: Remi Lehe Date: Tue Jul 24 23:29:34 2018 -0700 Explicitly import picsar_precision src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 commit 8237bb6756ee945013cd70548750356e37a46d4c Author: Remi Lehe Date: Tue Jul 24 23:08:03 2018 -0700 Import iso_c_binding when needed utils/fortran_parsers/use_module_only.py commit 1c97977171356e1cb174a90c2fcafeacc844199a Author: Remi Lehe Date: Tue Jul 24 22:55:33 2018 -0700 Better indent utils/fortran_parsers/use_module_only.py commit 52a39463dfae6a391e4f05f01820520816f60478 Author: Remi Lehe Date: Tue Jul 24 22:05:15 2018 -0700 Better cleaning utils/fortran_parsers/use_module_only.py commit 69ef6bb035f817613ce52a272343b67709ebdc5b Author: Remi Lehe Date: Tue Jul 24 21:56:48 2018 -0700 Better handling of ifdef utils/fortran_parsers/use_module_only.py commit be80f3b86a1d5c9ad6a918f125c0d9d46a5dac07 Author: Remi Lehe Date: Tue Jul 24 21:40:19 2018 -0700 Final updates to the script utils/fortran_parsers/use_module_only.py commit ef2d16fe5913dd233b1fafd268ab9cbb99f24ab4 Author: Remi Lehe Date: Tue Jul 24 21:01:06 2018 -0700 Better handling of ifdef utils/fortran_parsers/use_module_only.py commit 2fcba1b14ce3e6eaeac05b2004b6eaf5999efbd3 Author: Remi Lehe Date: Tue Jul 24 20:45:32 2018 -0700 Better handling of #if utils/fortran_parsers/use_module_only.py commit e2f1065541871bf070eb1d4e00987353e262e011 Author: Remi Lehe Date: Tue Jul 24 20:28:01 2018 -0700 Handle interface utils/fortran_parsers/use_module_only.py commit d830b554b3be293962450d404606c7dfb1c3cede Author: Remi Lehe Date: Tue Jul 24 18:25:31 2018 -0700 Improve adding of modules utils/fortran_parsers/use_module_only.py commit 6942c144c6247345a1de0de2106accadf20eec7b Author: Remi Lehe Date: Tue Jul 24 18:17:39 2018 -0700 Improve cleaning utils/fortran_parsers/use_module_only.py commit ce9da620df0eb0c0b9642200e2263f388c35d3a5 Author: Remi Lehe Date: Tue Jul 24 16:55:15 2018 -0700 Handle function utils/fortran_parsers/use_module_only.py commit 92d68f82a91b56595e12741196b9a1c36cc739fb Author: Remi Lehe Date: Tue Jul 24 16:45:21 2018 -0700 Use sorted dict for reproducibility utils/fortran_parsers/use_module_only.py commit fa7d8765a78366cb12673c19a0964106670005e3 Author: Remi Lehe Date: Tue Jul 24 16:43:15 2018 -0700 Explicitly import output_data src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 4a0341afcf3543966dcf0deb58d365b83424231c Author: Remi Lehe Date: Tue Jul 24 16:26:56 2018 -0700 Explicitly import output_data src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 utils/fortran_parsers/use_module_only.py commit 3976b154b1542c2287747c8ffb2c3dd9e2821cb9 Author: Remi Lehe Date: Tue Jul 24 16:25:33 2018 -0700 Explicitly import MPI src/particle_pushers/particle_pusher_manager_2d.F90 commit 0696d5ba7601595582de234388a3949ca39b10ec Author: Remi Lehe Date: Tue Jul 24 16:21:33 2018 -0700 Remove empty line with only & utils/fortran_parsers/use_module_only.py commit b532c04d2f1706f08b255cd19dcb999c77bb73e8 Author: Remi Lehe Date: Tue Jul 24 16:18:27 2018 -0700 Add missing use MPI src/particle_pushers/laser_pusher_manager_3d.F90 commit 92a0a86c75369a215923c1a5d189b09db05eb2f2 Author: Remi Lehe Date: Tue Jul 24 16:07:51 2018 -0700 Explicitly import MPI src/housekeeping/sorting.F90 utils/fortran_parsers/use_module_only.py commit b93e8ad7c7850ef5279c73e63d97a207d05a16f5 Author: Remi Lehe Date: Tue Jul 24 16:04:25 2018 -0700 Remove comments when scanning utils/fortran_parsers/use_module_only.py commit 1f632a90648b8056fcb5140f0e967af5141fb5c7 Author: Remi Lehe Date: Tue Jul 24 15:54:12 2018 -0700 Clean file utils/fortran_parsers/use_module_only.py commit 608f6e3a74e8d9f1fdd37133f9e7683d42e2886f Author: Remi Lehe Date: Tue Jul 24 15:31:40 2018 -0700 Handle ifdef utils/fortran_parsers/use_module_only.py commit 8fd8de9c3a9f23acb5b152f0f2886f6df3cec30c Author: Remi Lehe Date: Tue Jul 24 09:06:09 2018 -0700 Correct used modules utils/fortran_parsers/use_module_only.py commit 666a706438dfa68ccf23026d8f011a4a861c3eff Author: Remi Lehe Date: Tue Jul 24 09:05:01 2018 -0700 Add used modules utils/fortran_parsers/use_module_only.py commit c881cc31a2cccbf65058710ede2803364dafa664 Author: Remi Lehe Date: Tue Jul 24 08:55:42 2018 -0700 Add types to module variables utils/fortran_parsers/use_module_only.py commit 23ed18dfee4268e904e14ad9a44b1d993a7c4432 Author: Remi Lehe Date: Tue Jul 24 08:53:02 2018 -0700 USE picsar_precision where needed src/particle_pushers/kin_energy.F90 commit 6b99fcee1dc06b3cdd253669e2db7175c7179a71 Author: Remi Lehe Date: Tue Jul 24 08:47:49 2018 -0700 Remove proc modules utils/fortran_parsers/use_module_only.py commit 69cefe96a08e7119c85ca33e068b53f1e49e80b3 Author: Remi Lehe Date: Tue Jul 24 08:36:42 2018 -0700 Improve script utils/fortran_parsers/use_module_only.py commit 276b305078b7048db679e3e65be6075751b02c67 Author: Remi Lehe Date: Tue Jul 24 08:18:31 2018 -0700 Improve script utils/fortran_parsers/use_module_only.py commit 1c99a33f8c05bcce4571ed4e009175cee1095f56 Author: Remi Lehe Date: Tue Jul 24 08:01:34 2018 -0700 Add script to format modules utils/fortran_parsers/use_module_only.py commit 7e3f4399b76a4e50e380e7cbb67dae9025adec97 Author: Remi Lehe Date: Tue Jul 24 00:20:12 2018 -0700 Use WTIME when needed src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 9f6ee5530c5b428633cce667aa059c33bb30ed07 Author: Remi Lehe Date: Mon Jul 23 23:24:52 2018 -0700 Use PICSAR_precision whenever needed src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/filtering/nci_godfrey_corr.F90 src/housekeeping/sorting.F90 src/init_external.F90 src/ios/simple_io.F90 src/main.F90 src/modules/modules.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/kin_energy.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 src/submain.F90 commit 04e0afd363f6deb9260db4639e19c44c44461409 Author: haithem kallala Date: Fri Jul 20 14:59:24 2018 +0200 few changes to avoid conflicts src/diags/diags.F90 commit a02448b9f716a1d4caf6665c67564f6392d85cbf Author: haithem kallala Date: Fri Jul 20 14:58:39 2018 +0200 few changes to avoid conflicts src/diags/diags.F90 commit b8cee3960e4330204bc972d61e0ea022a9127ad8 Author: haithem kallala Date: Fri Jul 20 14:52:20 2018 +0200 this branch intends to performs computatoions related to Lorentz transforms(LT) in boostecd_frame diags of warp directly in picsar in order to use multithreading while performing LT. src/diags/diags.F90 commit d98df37f17e289c406d2604d90b6e9275469d136 Merge: 53c3f5e2 6f26d14f Author: Maxence Thevenet Date: Sat Jul 14 16:30:48 2018 +0000 Merged in ckc_field_solver (pull request #165) merged PICSAR and WarpX CKC solver Approved-by: Remi Lehe commit 6f26d14fe72ed34881e12b652884eec7b32d4d98 Author: Maxence Thévenet Date: Sat Jul 14 08:57:06 2018 -0700 minor fix doc string src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 commit 3bf2f13caed9a1f48107008526f574fa32e8be4c Author: Maxence Thevenet Date: Fri Jul 13 14:31:00 2018 -0700 minor cleaning src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 commit 002201d564836ccd39373bf3e82fe6c999d6fb9a Author: Maxence Thevenet Date: Fri Jul 13 14:26:09 2018 -0700 add file karkkainen.F90 src/field_solvers/Maxwell/karkkainen_solver/karkkainen.F90 commit 988c0a1482fb9b2e42be31d935ce25bf42d4fcc5 Author: Maxence Thevenet Date: Fri Jul 13 14:09:25 2018 -0700 merged PICSAR and WarpX CKC solver, and replace karkainnen spelling with karkkainen Makefile Makefile_profiling performance_tests/Makefile_perftest src/Make.package src/field_solvers/Maxwell/karkainnen_solver/karkainnen.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 utils/forthon_parser/forthon_parser.py utils/fortran_parsers/indent_file.py utils/fortran_parsers/justify_file.py commit 53c3f5e237f7441775169d6b2628f3bd7833512b Merge: d6cabaa1 b55551bc Author: Maxence Thevenet Date: Fri Jul 13 00:12:16 2018 +0000 Merged in merge_maxwell_solvers (pull request #163) Merge PICSAR and WarpX maxwell solvers Approved-by: Remi Lehe Approved-by: Henri VINCENTI commit b55551bc6dc42806a1bfd41829172fe66398fd1e Author: Maxence Thevenet Date: Wed Jul 11 10:04:53 2018 -0700 fix typos in push B src/field_solvers/Maxwell/yee_solver/yee.F90 commit 4788e1559c1a09283da1c55774b5e0146b8594ce Author: Maxence Thevenet Date: Wed Jul 11 10:03:51 2018 -0700 fix typos src/field_solvers/Maxwell/yee_solver/yee.F90 commit b78919cf07971f86dda3d067d4219f8995cb3f6d Author: Maxence Thevenet Date: Wed Jul 11 08:18:26 2018 -0700 further cleaning in OMP linebreak syntax src/field_solvers/Maxwell/yee_solver/yee.F90 commit da852a3f1190f64b309fff8249c4b3b3174ca5aa Author: Maxence Thevenet Date: Wed Jul 11 08:16:41 2018 -0700 minor cleaning src/field_solvers/Maxwell/yee_solver/yee.F90 commit b6a11b9a2a58d9eb27117d72f00b28a1d3701bad Author: Maxence Thevenet Date: Wed Jul 11 08:09:43 2018 -0700 explicit declaration of variable type in OMP pragmas src/field_solvers/Maxwell/yee_solver/yee.F90 commit acd970b007ade7193a8678c7d3569bea932b0ef5 Author: Maxence Thevenet Date: Thu Jul 5 14:26:55 2018 -0700 remove file warpx_yee.F90 src/field_solvers/Maxwell/yee_solver/warpx_yee.F90 commit 51a6532330de6374f9d25c3976f3cddde0ec833f Author: Maxence Thevenet Date: Thu Jul 5 13:20:17 2018 -0700 type conversion in 3d src/field_solvers/Maxwell/yee_solver/yee.F90 commit 8713b207bc3620503a055a11cab2a4fe0be2d261 Author: Maxence Thevenet Date: Thu Jul 5 12:54:15 2018 -0700 use different integer precision if compiled with -DWARPX src/field_solvers/Maxwell/yee_solver/yee.F90 commit 92fd96a109342aa89ff4adf8423a2164d14c005b Author: Maxence Thevenet Date: Thu Jul 5 09:57:15 2018 -0700 final cleaning. tests pass and docstrings should be consistent src/field_solvers/Maxwell/yee_solver/yee.F90 commit b33e945e6d77e78640368cbc599107a0486ff7e9 Author: Maxence Thevenet Date: Thu Jul 5 09:53:18 2018 -0700 remove c bindings as they should be put in warpx src/field_solvers/Maxwell/yee_solver/yee.F90 commit cb3c2da738538ce6e45cdb21b1216090e4568167 Author: Maxence Thevenet Date: Tue Jul 3 17:39:32 2018 -0700 interfacing with warpx src/Make.package src/field_solvers/Maxwell/yee_solver/yee.F90 commit e6afe6d68289c45e7ab81bc690af3206b9d64716 Author: Maxence Thevenet Date: Tue Jul 3 16:44:53 2018 -0700 skip OMP pragmas when flag WARPX is defined src/field_solvers/Maxwell/yee_solver/yee.F90 commit 449e7a9436113f6e4dfd0a4c2fed3a3ccfaaa22b Author: Maxence Thevenet Date: Tue Jul 3 16:36:42 2018 -0700 added threading src/field_solvers/Maxwell/yee_solver/yee.F90 commit dcbb70d8017abf3be89722c2c59810cf9939b6e7 Author: Maxence Thevenet Date: Tue Jul 3 15:49:43 2018 -0700 merged pxrpush_em3d_bvec src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit 4fa5c8402299858fab92853857a04c3ed5f050d8 Author: Maxence Thevenet Date: Tue Jul 3 15:42:00 2018 -0700 merged pxrpush_em3d_evec. tested serial and parallel without particles src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit b3ceb4800d0cb82dad3de1f3f43ca5db0affe3da Author: Maxence Thevenet Date: Tue Jul 3 15:22:04 2018 -0700 some cleaning src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 83e56f15fe34de7313f8a8a6618883302b51665c Author: Maxence Thevenet Date: Tue Jul 3 15:20:52 2018 -0700 added C binding src/field_solvers/Maxwell/yee_solver/yee.F90 commit 9401ec1d30c8f486bceb86eccbee5ff0722c1224 Author: Maxence Thevenet Date: Tue Jul 3 15:19:57 2018 -0700 merged pxrpush_em2d_bvec src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit 14b0a3bb275415bf51d24b569b6d5727f4dd926f Author: Maxence Thevenet Date: Tue Jul 3 14:57:31 2018 -0700 add c binding src/field_solvers/Maxwell/yee_solver/yee.F90 commit 9df16905b61a1b56ed03e369f36af95b3f818702 Author: Maxence Thevenet Date: Tue Jul 3 14:53:50 2018 -0700 some cleaning. No OpenMP threading yet src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit 054fd66d9ef55615c702984a5dabb7b4d8b5585f Author: Maxence Thevenet Date: Tue Jul 3 14:51:11 2018 -0700 merged pxrpush_em2d_evec. tested with laser antenna serial and 4 procs src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit d6cabaa1cb5edf5691533f44f84c007d04061900 Merge: dbf1bb57 9628e9dc Author: Henri VINCENTI Date: Tue Jul 3 17:04:17 2018 +0000 Merged in fix_pxr_bcs_non_blocking (pull request #162) Fixed a bug in particle_mpi_bcs_non_blocking Approved-by: Jean-Luc Vay commit 9628e9dc5aee9855fcce748b6432d70e681de5a1 Author: Henri VINCENTI Date: Tue Jul 3 18:47:21 2018 +0200 Fixed a bug in particle_mpi_bcs_non_blocking Reduced growth rate of ArrayList in buffer exchanges to spare memory at runtime src/boundary_conditions/particle_boundaries.F90 commit 3f0d757166f353dea4298384c2c79a442c797012 Author: haithem kallala Date: Fri Jun 8 10:34:50 2018 +0200 changing nspecies max to 40 in picsar src/modules/modules.F90 commit b472dcce4e6ee31d7f2d3fbf8d2eea946420adad Author: haithem_kallala Date: Wed Jun 6 01:38:49 2018 +0200 fixing a bug to correct the previous commit src/particle_pushers/laser_pusher_manager_3d.F90 commit ac605dd0698868e982d559a26b2b6715197d419e Author: haithem_kallala Date: Wed Jun 6 01:21:51 2018 +0200 now pxr antenna supports moving antennas src/particle_pushers/laser_pusher_manager_3d.F90 commit 818f698c9f771285a5e80a7c43dd2df8984fff08 Author: haithem kallala Date: Tue Jun 5 22:47:10 2018 +0200 correcting a bug preventing multiple antennas src/initialization/control_file.F90 commit 8551fce0f6f4c2c4178c9c7721fa33970c71a4dc Author: haithem kallala Date: Tue Jun 5 22:25:48 2018 +0200 deleting useless and redundant features of laser antenna in picsar this includes focus parameters which are not used properly (warp can still focus the laser at different location then the antenna plane) redundant features include pvec and vector parameters also cleaned the antenna tests examples/example_decks_fortran/plane_wave_test.pixr examples/example_decks_fortran/plane_wave_test_2d.pixr src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/tiling/tiling.F90 commit 453b0713a253046e94cb60b3a7fd35b838e6f755 Author: haithem kallala Date: Tue Jun 5 18:03:35 2018 +0200 adding a second species for antenna in full picsar mode and removing the flag that prevents antenna particles from deposing a charge density src/initialization/control_file.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit b4c92fb76d69cbe3eb20aa70a07e69cbea6ab5b8 Author: Guillaume Blaclard Date: Tue Jun 5 17:11:32 2018 +0200 Add docstring and remove useless spaces src/particle_pushers/laser_pusher_manager_3d.F90 commit d5f4edf11aa284730f75e37e5598117d18210333 Author: Guillaume Blaclard Date: Tue Jun 5 16:50:45 2018 +0200 Remove unnecessary module to pass the tests src/particle_pushers/laser_pusher_manager_3d.F90 commit bc5c10d78c888181a44d6ed7be8aed2cbf57d37f Author: Guillaume Blaclard Date: Tue Jun 5 15:34:34 2018 +0200 Allow the code to run even if there is no other species src/modules/modules.F90 src/parallelization/tiling/tiling.F90 commit 9deff5161ff8da051568cb5a5e6c0f7b123cba70 Author: Guillaume Blaclard Date: Tue Jun 5 11:40:16 2018 +0200 Remove unnecessary package to pass shippable tests src/parallelization/tiling/tiling.F90 commit 0281db8b68b595079ede5fa8ac470aad6c8574ec Author: Guillaume Blaclard Date: Mon Jun 4 19:43:32 2018 +0200 End coupling, debug some old bugs, still work to do src/diags/diags.F90 src/modules/modules.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 71d11df124bce30d6c17f7617375da074e3a3611 Author: Guillaume Blaclard Date: Fri Jun 1 18:07:18 2018 +0200 [WIP] New modifications and print statements src/modules/modules.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 121302512ca9b71bf761050142e7e7d01f8384b4 Author: haithem_kallala Date: Fri Jun 1 14:42:18 2018 +0200 adapt picsar antenna to warp src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit dbf1bb574dbbc3de43e2adcd7ef3eb25dc54532d Merge: 627ee97c 9dedd5b0 Author: Maxence Thevenet Date: Fri May 18 21:55:27 2018 +0000 Merged in fix_pusher (pull request #160) Correct typos in compiler directives in Boris pusher 3d commit 9dedd5b047494ce2129099d26af132bce2d4f20e Merge: 29908fc8 627ee97c Author: Maxence Thevenet Date: Wed May 16 17:36:01 2018 -0700 Merge branch 'master' of https://bitbucket.org/berkeleylab/picsar commit 29908fc84b48ef4acc55f638e9010dc9a0d60d6f Author: Maxence Thevenet Date: Wed May 16 17:35:32 2018 -0700 Correct typos in compiler directives in Boris pusher 3d src/particle_pushers/boris_pusher/boris_3d.F90 commit 627ee97ce1e1e566b977ab257a5d49a7899f9987 Merge: c6cd1c91 493a78d0 Author: Remi Lehe Date: Wed May 16 15:43:55 2018 +0000 Merged in measure_flag (pull request #159) Control whether fftw uses measure or estimate Approved-by: Henri VINCENTI commit c6cd1c9157581e577e536a28e027ff7eb8d6f1bd Merge: 620477f8 3fe91d57 Author: Henri VINCENTI Date: Wed May 16 14:12:15 2018 +0000 Merged in pusher_boris_rr (pull request #158) Pusher boris rr commit 3fe91d57938b973f45ebecc4e43b3bf52843e74b Author: Henri VINCENTI Date: Wed May 16 14:45:31 2018 +0200 corrected path error in shippable shippable.yml commit 493a78d06b267182fac1bbbcc44e097dbcab6158 Author: Remi Lehe Date: Tue May 15 23:14:53 2018 -0700 Control whether fftw uses measure or estimate src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/modules/modules.F90 commit a1a80b91682fcc45d70b716836bad561b18de054 Author: Henri VINCENTI Date: Tue May 15 12:02:02 2018 +0200 modified shippable file for automated tests for Radiation reaction shippable.yml commit 79d0f31d10ef41ff46581b5bb41c9ae6120773a8 Author: Henri VINCENTI Date: Tue May 15 12:00:19 2018 +0200 Added python tests and fixed errors in field gathering Acceptance_testing/Python_tests/test_radiation_reaction/test_rr_synchrotron_LL.py src/field_gathering/field_gathering_manager_3d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit 9c27e7a1e1fc5d4cee6ed89fd84b7a88f247ed72 Author: Henri VINCENTI Date: Tue May 15 10:19:06 2018 +0200 Fixed truncation line error src/particle_pushers/boris_pusher/boris_3d.F90 commit 8de193d204257988c940c76a3077f1d1db6e3d60 Author: haithem_kallala Date: Tue May 8 23:55:41 2018 +0200 adding nb guards groups into the description src/submain.F90 commit 2ab0877c8c76d4bd26a8e514300902544199f52b Author: haithem_kallala Date: Tue May 8 19:13:49 2018 +0200 trying to fix shippable configure utils/forthon_parser/forthon_parser.py utils/forthon_parser/forthon_parser_full_pxr.py commit 920216c2b36a27d670d27315815fe2605e9f134c Author: haithem_kallala Date: Tue May 8 18:02:34 2018 +0200 fixing configure file configure commit 620477f8fb30192c981b626457f688bb34506525 Merge: e4f22590 c975a96c Author: Maxence Thevenet Date: Tue May 1 18:47:25 2018 +0000 Merged in warpx_filter (pull request #157) Change interface to call the NCI filter Approved-by: Maxence Thevenet Approved-by: Weiqun Zhang commit c975a96c787d0e45a9f08d91bb33b1ade9fee6ae Author: Maxence Thevenet Date: Tue May 1 10:27:03 2018 -0700 add comments and delete old functions src/filtering/nci_godfrey_corr.F90 commit 69f286a4ca845acfea427fc58a5a112f0beefe64 Author: Weiqun Zhang Date: Mon Apr 30 17:25:10 2018 -0700 fix bug in the new filter code src/filtering/nci_godfrey_corr.F90 commit df9835b4b1e035b31567267642fb5c0f067d8a7d Author: Weiqun Zhang Date: Mon Apr 30 15:40:15 2018 -0700 new filter functions for warpx src/filtering/nci_godfrey_corr.F90 commit 68ea7f4591edd4e38af6fad81ee796a6e17d2176 Author: Murad Date: Fri Apr 27 19:20:35 2018 +0200 modules src/modules/modules.F90 commit f8dbdbf396f6e7f77ca10fbb0b4822d7ed739257 Author: Murad Date: Fri Apr 27 19:19:22 2018 +0200 push mana 3D src/particle_pushers/particle_pusher_manager_3d.F90 commit 65c4d87957e1633a29aef4daf7c63f5c116b05d6 Author: Murad Date: Fri Apr 27 19:18:39 2018 +0200 part pusher mana 2D src/particle_pushers/particle_pusher_manager_2d.F90 commit 795b4ceb4ccb3ac3eacc980d78580205df230541 Author: Murad Date: Fri Apr 27 19:16:38 2018 +0200 pusher with LL model src/particle_pushers/boris_pusher/boris_3d.F90 commit b215287a7ddf8fd85e81408b93d850a5c819bf11 Author: Murad Date: Thu Apr 26 20:41:32 2018 +0200 S09 model for RR verified with both tests src/particle_pushers/boris_pusher/boris_3d.F90 commit e4f22590b88ae75a41a347ee5b8d18d836eabc7d Merge: 325321e9 9c1d6107 Author: Maxence Thevenet Date: Thu Apr 26 16:13:56 2018 +0000 Merged in godfrey_filter (pull request #156) Numerical Cherenkov Instability Corrector Approved-by: Remi Lehe commit 9c1d6107dac1d4c9137423fc1b442067e54d0a33 Author: Maxence Thevenet Date: Wed Apr 25 11:08:24 2018 -0700 minor. adjust index src/filtering/nci_godfrey_corr.F90 commit ad93126b79cc2596f8812cce40ea1c9d3bb7b75d Author: Maxence Thevenet Date: Wed Apr 25 09:55:47 2018 -0700 Include fixes suggested by Remi src/filtering/nci_godfrey_corr.F90 commit a04b46b61f039193fba4acd6ec33dd84649a42aa Author: Murad Date: Tue Apr 24 13:05:54 2018 +0200 Last changes src/field_gathering/field_gathering_manager_3d.F90 src/modules/modules.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit b099d8e59a6a4fb2b08b967c4a4718155e970ca1 Author: Maxence Thevenet Date: Mon Apr 23 16:06:19 2018 -0700 use picsar's REAL size instead of WarpX's src/filtering/nci_godfrey_corr.F90 commit d930295466db27b78767d29fe8511a3474803f6d Author: Maxence Thevenet Date: Fri Apr 20 14:50:16 2018 -0700 reordered nested loop src/filtering/nci_godfrey_corr.F90 commit 7728776c75cc661289269d4ecf7ad7af4c6313bf Author: Maxence Thevenet Date: Fri Apr 20 12:55:17 2018 -0700 fix type mismatch for argument l_lower_order_in_v src/filtering/nci_godfrey_corr.F90 commit b52969e33bdc8b027add283365b092b83ea87f38 Author: Murad Date: Thu Apr 19 18:39:54 2018 +0200 Particle pusher manager 3D with RR force pushers src/particle_pushers/particle_pusher_manager_3d.F90 commit 2776a4b73df4ce55e398dde88aedac94f49b70db Author: Murad Date: Thu Apr 19 18:38:20 2018 +0200 particle pusher manager 2D with new RR force pushers src/particle_pushers/particle_pusher_manager_2d.F90 commit 9b43be5781dd1f3b5c63efe69b1eab828be87cc5 Author: Murad Date: Thu Apr 19 18:35:00 2018 +0200 Boris pusher with Lorentz and RR S09/RR B08 forces ref.:https://doi.org/10.1016/j.cpc.2016.04.002 src/particle_pushers/boris_pusher/boris_3d.F90 commit 11f9b8f1de441b9e057f54df977f097456f1770d Author: Maxence Thevenet Date: Mon Apr 16 16:47:10 2018 -0700 godfrey_filter src/filtering/nci_godfrey_corr.F90 commit 19cb843b6356b0697c300d97b8ed528e6433d30c Author: Maxence Thevenet Date: Fri Apr 13 11:52:35 2018 -0700 added documentation src/filtering/nci_godfrey_corr.F90 commit 4e25121d144a2d6d9e020fa2a511c65306ba9ce5 Author: Murad Date: Fri Apr 13 19:48:58 2018 +0200 boris pusher with Lorentz and RR which works src/particle_pushers/boris_pusher/boris_3d.F90 commit 970df323a4c5b4d90c01835d3803911e2894e634 Author: Maxence Thevenet Date: Fri Apr 13 09:56:53 2018 -0700 makefile src/Make.package commit 2b76af444baca8a5aa1d3652345773c858a8e16e Author: Maxence Thevenet Date: Fri Apr 13 08:57:51 2018 -0700 3d version implemented src/filtering/nci_godfrey_corr.F90 commit 37637c93e57833c7d3458891eef9b9049613b9b3 Author: Maxence Thevenet Date: Thu Apr 12 18:14:09 2018 -0700 final version for 2d src/filtering/nci_godfrey_corr.F90 commit 0ce40cf70989f67c3d61c6cb4dfcee5838d1b7c8 Author: Henri VINCENTI Date: Thu Apr 12 17:34:16 2018 +0200 Added particle pusher with rr for 2D geometry Corrected indentation in 3d routine with rr src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit 2043a133b7e96967891ea3e7f3d9810e0976614c Author: Murad Date: Thu Apr 12 17:24:34 2018 +0200 pusher manager update for boris_rr src/particle_pushers/particle_pusher_manager_3d.F90 commit 7feffe7d5d3602fc2f97d41cdd3f2909d40a1d2f Author: haithem_kallala Date: Thu Apr 12 08:27:03 2018 +0200 fixing a ppml prblm src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 1cd16b8375288db5fc5484100352dd2b472dc1b2 Author: Maxence Thevenet Date: Wed Apr 11 19:00:39 2018 -0700 filter works not good enough src/filtering/nci_godfrey_corr.F90 commit 33dd8c8cefb73e21c6b49bb2794fd58949d0f974 Author: Murad Date: Wed Apr 11 22:12:38 2018 +0200 updated RR and Lorentz pusher src/particle_pushers/boris_pusher/boris_3d.F90 commit 7374c0ee0319e7019b02a3d9045bfb7912589cc0 Author: Murad Date: Wed Apr 11 20:07:25 2018 +0200 subroutine with RR and Lorentz push src/particle_pushers/boris_pusher/boris_3d.F90 commit 5c38fe3605aa211fc7c9241ae1c74530515f5e7e Author: Murad Date: Wed Apr 11 13:53:46 2018 +0200 New subroutine with RR push src/particle_pushers/boris_pusher/boris_3d.F90 commit a55f539d9d43689a79dc8961f68bf9c47b0cf945 Author: Maxence Thevenet Date: Tue Apr 10 18:38:55 2018 -0700 tmp version with test going on the filter src/filtering/nci_godfrey_corr.F90 commit 3647e1956e4d62a030ac9926ab683c4cf91db030 Author: haithem_kallala Date: Tue Apr 10 19:34:56 2018 +0200 fixing a bug in configure configure src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 09f942c55f8b6a4f3fa92153763f8e5be04624b6 Author: haithem_kallala Date: Tue Apr 10 14:27:48 2018 +0200 save before chane src/initialization/control_file.F90 commit 38266292d21fbc68f0d4dda791b7098179f48c05 Author: haithem_kallala Date: Tue Apr 10 14:27:20 2018 +0200 save changes before debugging src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 728dff903514fc9e84fa22c5b3dd435fd85a2774 Author: haithem_kallala Date: Tue Apr 10 12:36:14 2018 +0200 trying to fix compiler configure commit 9754ef6b0bb9d4500eedd1222393dbdccab29702 Author: Maxence Thevenet Date: Mon Apr 9 18:48:17 2018 -0700 working version src/filtering/nci_godfrey_corr.F90 commit 16bd065bcf38e81d30cb5f8afefe30b778db672f Author: haithem_kallala Date: Tue Apr 10 02:55:56 2018 +0200 little fix src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/modules/modules.F90 src/submain.F90 commit eac7f7dc62c609d71f25648070a8e6212c03e059 Author: haithem_kallala Date: Tue Apr 10 02:46:28 2018 +0200 fixing configureto pass tests configure commit 092ed6c8e2e2f70d742b1ecc64778737ad76f751 Author: haithem_kallala Date: Tue Apr 10 02:02:15 2018 +0200 aborting fix laser in this branch to check tests may be remerged in the future src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 commit f4b509833ab7b64f3d24037459143272f27406e8 Author: haithem_kallala Date: Tue Apr 10 01:11:16 2018 +0200 adding instructions for installing hybrid picsar for warp Installation_doc/Python/INSTALL_PICSAR_FOR_WARP_FULL_MODE Installation_doc/Python/INSTALL_PYTHON_CORI.md Installation_doc/Python/INSTALL_PYTHON_EDISON.md Installation_doc/Python/INSTALL_PYTHON_LINUX.md Installation_doc/Python/INSTALL_PYTHON_MACOS.md configure commit d83802d6d057d84c97b5893007432329e0cce742 Author: haithem_kallala Date: Mon Apr 9 23:30:07 2018 +0200 fixing coupling with warp (now 2d s validated) src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 50102864ffc11ac250a133f1ee95097e9e6b3ba0 Author: haithem_kallala Date: Mon Apr 9 16:35:34 2018 +0200 tested 2d dirac with local psatd src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/modules/modules.F90 commit 0d765ccf8908aff6b09c2fe0312b2b0ab9dd10ed Author: Maxence Thevenet Date: Fri Apr 6 18:46:06 2018 -0700 initial commit. DOES NOT COMPILE src/filtering/nci_godfrey_corr.F90 commit 85db2e093e596a4e7deada67209b3ca518f32976 Author: Murad Date: Fri Apr 6 18:49:23 2018 +0200 Creation of new Boris push routine with RR src/particle_pushers/boris_pusher/boris_3d.F90 commit 2bb8c66d68cb3043f9f4b8df26cc71709511e26f Author: haithem_kallala Date: Fri Apr 6 18:05:55 2018 +0200 push for warp link src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit 1a22d63143953218349fcfc61f3f0da241a787eb Author: haithem_kallala Date: Wed Apr 4 10:42:10 2018 +0200 trying to fix link src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 806caa8a6c06c3500f2e133eeec07e9fa554e3ab Author: haithem_kallala Date: Tue Mar 27 15:20:15 2018 +0200 nolonguer doing y exchanges in 2d src/boundary_conditions/field_boundaries.F90 commit a38dd5b066f93327300da177f6c6fa977b593fde Author: haithem_kallala Date: Tue Mar 27 12:05:17 2018 +0200 fixing reader and copy src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/initialization/control_file.F90 commit cded868335277863f6c3b3b3652fbe2d2b900ecf Author: haithem_kallala Date: Tue Mar 27 11:35:42 2018 +0200 fixing absorbing_bcs src/initialization/control_file.F90 commit c20dacbdf2c4368f64dbac1c8fe4fcc4ae9cdce0 Author: haithem_kallala Date: Mon Mar 26 16:20:52 2018 +0200 adding a subroutine to compute neigbhour mpi procs because warp does not link its mpi geometry with pxr! src/parallelization/mpi/mpi_routines.F90 commit 651223713d13cd6bb5f8650bf81ffc6752416a78 Author: haithem_kallala Date: Mon Mar 26 15:07:44 2018 +0200 fixing bugs wit warp src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/parallelization/mpi/mpi_routines.F90 commit 74dc8e3c188c50dc35aafb2b4c2ce789ae2ecf63 Author: haithem_kallala Date: Sun Mar 25 19:48:16 2018 +0200 fixing pxr to link to warpw src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 3eaaebe66b516a4f7dedf59ddf96bebe2d14cf37 Author: haithem_kallala Date: Fri Mar 23 15:58:46 2018 +0100 fixing test 2d examples/example_decks_fortran/plane_wave_test_2d.pixr commit de563ebc409664541595c1084fcd7bf8997c06a4 Author: haithem_kallala Date: Thu Mar 22 14:53:09 2018 +0100 now fftw_mpi works configure src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 8971ca52af2b1406138a6b28b8a7386e99102869 Author: haithem_kallala Date: Thu Mar 22 00:15:36 2018 +0100 new branch for full pxr simulations using warp new psatd solver routines have been adjusted to be adequate with forthon wrapper configure src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 utils/forthon_parser/forthon_parser.py commit f6d327ad5bb7e43e8b9c7f82be1c0b0e34db9761 Author: haithem_kallala Date: Wed Mar 21 19:56:16 2018 +0100 remerging with correct_laserwq examples/example_decks_fortran/plane_wave_test_2d.pixr src/initialization/control_file.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 79f299ba84d1715107278064b7d6bdd239add731 Author: haithem_kallala Date: Wed Mar 21 19:40:54 2018 +0100 fixing a bug occuring when c_dim = 2 and g_spectral = false src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 commit 77a425c01ea7d7c978ac588d5e6925904303ca1e Author: haithem_kallala Date: Wed Mar 21 19:16:40 2018 +0100 unmerging correct laser from herewq src/initialization/control_file.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 4709f191479dd7601b786fa21a322afac143ad9e Author: haithem_kallala Date: Wed Mar 21 18:46:52 2018 +0100 cleaning the bug fix when an mpi is inside a guardcell and when a group contains one procwq src/housekeeping/load_balancing.F90 commit 325321e9f85a27abc5cae5d3681307399345a0a6 Merge: 2b316238 a0c54b4c Author: Weiqun Zhang Date: Fri Mar 9 22:31:22 2018 +0000 Merged in warpx_psatd (pull request #154) modify WarpX Make.package for spectral solver commit a0c54b4cb2a0e19ff746b56b35ebe0d213991296 Author: Weiqun Zhang Date: Fri Mar 9 10:15:36 2018 -0800 modify WarpX Make.package for spectral solver src/Make.package commit b71dfff9a269359fa817658a7d225b1364e5fe41 Author: hkallala Date: Tue Mar 6 11:07:25 2018 +0000 fixing a bug in hybrid/local intersections src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 commit 49ece290558b84aa12a07518e59345444c291947 Merge: 82ac841a 4aa9eb57 Author: hkallala Date: Tue Feb 27 10:46:50 2018 +0000 merged with correct laser to get corrected laser Merge branch 'correct_laser' into picsar_pml_inside_domain commit 82ac841a2a480c6b7d7c4f661fff7e059458f5c7 Merge: 92455823 2b316238 Author: hkallala Date: Tue Feb 27 10:44:47 2018 +0000 merged to get the low memory consomption tiles Merge branch 'master' into picsar_pml_inside_domain commit 4aa9eb57bdb7834670f2af8d748aa04b417e8b3d Author: haithem kallala Date: Mon Feb 26 19:29:17 2018 +0100 fixing problem with memory optimization src/parallelization/tiling/tiling.F90 commit 900d90be86e549d96b406d64cd3a7b2385ec1b16 Author: haithem kallala Date: Mon Feb 26 19:25:39 2018 +0100 quick fix src/initialization/control_file.F90 commit aafe90419246af5f8c005b414325c2fd7a73149e Author: haithem kallala Date: Mon Feb 26 19:24:24 2018 +0100 deleting usleess changes src/initialization/control_file.F90 commit 0859cabbae23602fad3cb5356b01727380dfd269 Author: haithem kallala Date: Mon Feb 26 19:15:25 2018 +0100 fixing a bug src/initialization/control_file.F90 commit f1eeb0a5eab481e1cc62d00ab68e84d2c345952a Author: haithem kallala Date: Mon Feb 26 18:56:28 2018 +0100 small fix src/parallelization/tiling/tiling.F90 commit b4d418eaca6ae50e63ac8c3ef172e37bc77547cc Author: haithem kallala Date: Mon Feb 26 18:37:40 2018 +0100 fixing a problem with laser propagation now antenna is made of two species of opposite charge to avoid problems with Poisson src/initialization/control_file.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 924558233efb75c85b2ab9c7229613a35f0e213f Author: haithem kallala Date: Fri Feb 23 05:32:34 2018 +0100 fixing a bug src/housekeeping/load_balancing.F90 commit cea1f8e6330f9debb6d25b40e2948393ef0e1ca9 Author: haithem kallala Date: Fri Feb 23 03:53:00 2018 +0100 fixing a problem occuring with big group guardcells src/housekeeping/load_balancing.F90 commit 07e1680f97db269e2d7e19d97f92b678af010e3c Author: haithem kallala Date: Thu Feb 22 15:28:41 2018 +0100 fixing a small error src/submain.F90 commit e31e30ee2ffac8d7cfc2223a3fdb11f2a230ac87 Author: haithem kallala Date: Thu Feb 22 15:21:50 2018 +0100 fixing pb with shippable src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit d1e1cc9515158c920193cc892cc4c296b086de33 Author: haithem kallala Date: Thu Feb 22 14:10:08 2018 +0100 local and global pmls are debugged and give the same results# Please enter the commit message for your changes. Lines starting src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit da8c3d069d0b05fd6d91177aae08d44c28c75fd6 Author: haithem kallala Date: Thu Feb 22 11:28:12 2018 +0100 pml with groups work perfectly well but there is a pb with local psatd src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit 3df0b31d2f1af30b77b237697df016fb002acb0e Author: haithem kallala Date: Wed Feb 21 19:41:12 2018 +0100 now pml are symetric (fixed staggered grid problem src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit c8d2d9774da6c21168fbd9e6aa17522ac84d8c6f Author: haithem kallala Date: Wed Feb 21 18:04:10 2018 +0100 fixing bgu src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit 7c7e7e1879e61dba07f54e4b4fca704159566a4c Author: haithem kallala Date: Wed Feb 21 17:11:27 2018 +0100 bug fix src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 247d6d32ae621f31f66edc73d3748ea0380a46ca Author: haithem kallala Date: Wed Feb 21 16:54:19 2018 +0100 fixing timer src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 8fc9655d1329462da241961d1e6858d6b55ff2fa Author: haithem kallala Date: Wed Feb 21 16:52:07 2018 +0100 adding comments src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit ee6c27520c5715caf4aa5f138f83cffe7dcbee1c Author: haithem kallala Date: Wed Feb 21 15:39:16 2018 +0100 less memory cost sigma arrays src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 src/submain.F90 commit 20f5c737c17f077b0a8219467590c5b4aa07ffb9 Author: haithem kallala Date: Wed Feb 21 13:52:16 2018 +0100 changing sigma_x to pointer to avoid failure in shippable tests src/modules/modules.F90 commit 032a0b6092081c22353ea47162e209a8def828cd Author: haithem kallala Date: Wed Feb 21 13:41:34 2018 +0100 fixing shippable src/parallelization/mpi/mpi_routines.F90 commit ef84a5dca191507cdd1e2be2a893f40040d01055 Author: haithem kallala Date: Wed Feb 21 11:15:38 2018 +0100 using order 3 polynomial src/submain.F90 commit 0c38e83f120ab08c86dbcce84a39e9689c89b4ee Author: haithem kallala Date: Tue Feb 20 18:52:42 2018 +0100 removing damping and advection splitting for fields as it was useless src/submain.F90 commit 5271ac50dcdb92377aa22d3d403db3b663ecd322 Author: haithem kallala Date: Tue Feb 20 18:43:12 2018 +0100 adding a timer for absorbing bcs and updating compute_field_memory src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 2db5aa3f28c24bfc5bd52d19eca801d067fb7518 Author: haithem kallala Date: Tue Feb 20 17:03:27 2018 +0100 adding comments src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 5cd15b22d4532155332950670e1d80260cdd2db1 Author: haithem kallala Date: Tue Feb 20 16:35:53 2018 +0100 init splitted fields in init_all src/submain.F90 commit e2065f1178cc113777d24ec72e41384e50038718 Author: haithem kallala Date: Tue Feb 20 16:26:22 2018 +0100 correcting a bug when allocating splitted fields src/parallelization/mpi/mpi_routines.F90 commit 7d567277951915c1d2709279624bd1862f574530 Author: haithem kallala Date: Tue Feb 20 14:11:30 2018 +0100 fixing a bug when using grps src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 78f8d7c8e454156b350b40a07df37e6bfccccadc Author: haithem kallala Date: Tue Feb 20 13:57:14 2018 +0100 fixing problem src/submain.F90 commit fe2a04e701d346b1eeeee5a8f6e1cc8a9a989899 Author: haithem kallala Date: Tue Feb 20 13:05:25 2018 +0100 fixing noise pblm src/submain.F90 commit 5c70491f989bc01b1dfbd3d45258858463ad8a85 Author: haithem kallala Date: Tue Feb 20 12:39:08 2018 +0100 added comments and corrected a bug in init sigma src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit 4a3f6a5e369a1786c0a562c252968b94ac68da14 Author: haithem kallala Date: Tue Feb 20 12:13:58 2018 +0100 adding comments src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/submain.F90 commit 0fd09248f0c11639542b20dc3b74f1a7cb18017d Author: haithem kallala Date: Tue Feb 20 11:25:11 2018 +0100 adding a 2d pml test examples/example_decks_fortran/tes_pml_2d.pixr commit ceb78892313ea22b7163b454e5ad3b35d0ff7352 Author: haithem kallala Date: Tue Feb 20 11:23:12 2018 +0100 adding comments src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 13f2fd23c9222eb27d120582b56e28a06a76f640 Author: haithem kallala Date: Tue Feb 20 10:48:54 2018 +0100 now no need to communicate field after damping src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/main.F90 src/submain.F90 commit f554ca550253c87f227ac9e3b13dc1e07adaefde Author: haithem kallala Date: Tue Feb 20 10:19:27 2018 +0100 first commit in this branch pmls are working but are inside the physical domain further cleaning is undertaken src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/housekeeping/load_balancing.F90 src/initialization/control_file.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 2b316238e35dfbcefa1d71b000b0d9ad2d5db028 Merge: c50dbe61 b28c3464 Author: Henri VINCENTI Date: Mon Feb 19 20:53:56 2018 +0000 Merged in pxr_save_copies (pull request #151) Pxr save copies commit b28c3464cd034a097adb79b5321181cd093f540a Author: Henri VINCENTI Date: Mon Feb 19 16:00:32 2018 +0100 Removed useless sanity checks in resize array routines in tiling.F90 src/parallelization/tiling/tiling.F90 commit f0b1d2ce78d74aa143bb7e09504686ed9bea8a75 Author: Henri VINCENTI Date: Mon Feb 19 15:55:37 2018 +0100 Removed extra memory copy in field gathering by removing calls to resize_3D_array_real that was resizing grid tile arrays in field gathering routines This has been replaced by explicit private thread allocation/de-allocation in the field gathering routines src/field_gathering/field_gathering_manager_3d.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit c50dbe61a1a2e7ae07d09e3c3f7eabb86de4c9d2 Merge: 3675846a c595674c Author: Maxence Thevenet Date: Tue Feb 13 16:38:41 2018 +0000 Merged in MaxThevenet/install_python_corimd-edited-online-with-1518487630393 (pull request #150) clarify doc to compile PICSAR as a library. Approved-by: Guillaume Blaclard commit c595674c85b27a68c0c16dd2fa735e0190bdb896 Author: Maxence Thevenet Date: Tue Feb 13 02:12:18 2018 +0000 minor Installation_doc/Python/INSTALL_PYTHON_CORI.md commit 3369e26bdee52dbbbb706e1d03e5d3e1999287e1 Author: Maxence Thevenet Date: Tue Feb 13 02:08:24 2018 +0000 clarify doc to compile PICSAR as a library. Installation_doc/Python/INSTALL_PYTHON_CORI.md commit 3675846ae63fc2f954cb8818fc0209f0d5c4a03e Author: Henri VINCENTI Date: Sat Feb 10 16:35:30 2018 +0100 Fixing a bug in control_file.F90 appearing at compile time without fftw src/initialization/control_file.F90 commit 95a38e24e92de5cb24d272586f42988c9187191e Author: Henri VINCENTI Date: Fri Feb 9 18:54:13 2018 +0100 Small corrections on variable names in control.F90 to avoid confusion betwee nx,ny,nz and nxguards etc. src/initialization/control_file.F90 commit 1e25479550dd2da12f8a44620476eebcf4711e26 Author: Henri VINCENTI Date: Fri Feb 9 18:09:11 2018 +0100 Added options to command line in control_file.F90 src/initialization/control_file.F90 commit 76ce5080ebbee4a664bd24cfcaf4d7c02ca9d2a5 Author: Henri VINCENTI Date: Fri Feb 9 12:12:41 2018 +0100 Corrected a bug in character length src/main.F90 commit c9aabf71df5871fc6760d21592fd1e0ecbdfbc00 Author: Henri VINCENTI Date: Fri Feb 9 11:59:39 2018 +0100 Added use module statements src/main.F90 commit cbe7694bcf904e3e825184a604b73d9d7e09db4f Author: Henri VINCENTI Date: Fri Feb 9 11:57:41 2018 +0100 Modified time statistics output src/main.F90 commit e6f721a3cb6cd705f133c1f88e4fa1acf5d4b6bd Merge: 5b4ea440 8b35be3b Author: kallala NA Date: Thu Feb 8 21:48:11 2018 +0000 Merged in commenting_init_kspace (pull request #148) addng comments to init_kspace commit 5b4ea4400d63e8587108f09a4d015cb0b0f16c19 Merge: 705f064d d6c1288d Author: Henri VINCENTI Date: Thu Feb 8 21:47:07 2018 +0000 Merged in picsar_suppress_aofgrid (pull request #149) This PR is intended to reduce memory footprint of PICSAR commit d6c1288dff6111661ed01b92b9b4679efe243b32 Author: Henri VINCENTI Date: Thu Feb 8 16:23:14 2018 +0100 Defined new data type buffer for optimizing memory savings for MPI particle exchanges (blocking and non-blocking) src/boundary_conditions/particle_boundaries.F90 src/modules/modules.F90 commit 8b35be3b111ce17dc7b63db10120c74e2d8ec12e Merge: e158e6f1 705f064d Author: haithem kallala Date: Thu Feb 8 14:34:40 2018 +0100 Merge branch 'master' into commenting_init_kspace Conflicts: src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 23b58d598772280aa46c931f8b136012a76f474f Author: Henri VINCENTI Date: Thu Feb 8 13:51:06 2018 +0100 Modified particle boundaries buffer allocation for particle exchanges. The size of buffer is carefully computed to avoid too large memory allocation at runtime src/boundary_conditions/particle_boundaries.F90 commit be2f80e2a6ad9d56f9a3da0edcc29c48af40a2c0 Author: Henri VINCENTI Date: Thu Feb 8 12:26:13 2018 +0100 Modified tests Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 commit 705f064d700d7dd0555aba6fe2b69b61dbb4a558 Merge: 9815d856 66120872 Author: Remi Lehe Date: Thu Feb 8 11:10:18 2018 +0000 Merged in clean-up (pull request #146) Remove unused variables commit edcce4cc4ca122cc5de455c8199fb3c7b44417e4 Author: Henri VINCENTI Date: Thu Feb 8 12:04:33 2018 +0100 This commit is intended to reduce memory footprint of PICSAR, especially by reducing the size of the structure aofgrid_tiles. This structure is conserved by its number of arguments strongly reduced: - Components rhotile, extile, eytile, eztile, bxtile, bytile, bztile were suppressed, - Components jxtile,jytile,jztile have been replaced by arr1,arr2,arr3 arr1,arr2,arr3 are important in the parallel shared-memory version of current reduction from tile arrays to the big current arrays (used in the Maxwell solver). arr1 is also used in charge reduction from tile arrays to the big charge array. This spares more than x3 times in memory while keeping same performances. For the field gathering part, structures extile, eytile etc. are replaced by private temporary arrays (one array per thread). src/field_gathering/field_gathering_manager_3d.F90 src/modules/modules.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit e158e6f1df24a0e928b7064e4687c23746f58ebe Author: haithem kallala Date: Wed Feb 7 23:27:45 2018 +0100 fixing bug src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 0c6c05ab36dbdcaa2552ae43affa1a7dd4fc57eb Author: haithem kallala Date: Wed Feb 7 19:45:33 2018 +0100 deallocating temporal k space vector src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 578640c2102f5f685e311bf8c5d573bb71c92b5c Author: haithem kallala Date: Wed Feb 7 19:40:05 2018 +0100 optimizing init k space deleting array of pointers for kspace and at_op src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 661208728845438d646f17172e03d0f927a9b015 Author: Remi Lehe Date: Wed Feb 7 10:32:45 2018 -0800 Remove unused variables src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 commit 076cc9016c157294a962d51e32675713ba457f5e Author: haithem kallala Date: Wed Feb 7 17:56:03 2018 +0100 clearifing comment src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 34ea84b98a3f7cf0696d0131627275beb7bffbd1 Author: haithem kallala Date: Wed Feb 7 17:47:21 2018 +0100 adding a comment src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit e7ccf3d29a42d62f9cf186dbb66194eecad8ee88 Author: haithem kallala Date: Wed Feb 7 17:36:00 2018 +0100 fixing an erratum src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 7199056cbb5fe89971e38ea080245e48b1de56ca Author: haithem kallala Date: Wed Feb 7 17:34:05 2018 +0100 adding comments for fftw_mpi_transpose src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 0971d6ed6b1eca4fa15126dab624181780ffde38 Author: haithem kallala Date: Wed Feb 7 17:19:13 2018 +0100 explaining what does g_spectral and deleting redundancy src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit dd95607d40e943d40b964f9ee1ae61dcc0ff406b Author: haithem kallala Date: Wed Feb 7 17:08:18 2018 +0100 fixing comments in fourier_pasotd.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit ff7e912c6cbfcee1a066f99793a62b725252b13c Author: haithem kallala Date: Wed Feb 7 16:43:24 2018 +0100 adding further comments src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit ab9e88577aea5aa4d00c613cc4ed6f408c509e95 Author: haithem kallala Date: Wed Feb 7 16:24:49 2018 +0100 adding comments to init_kspace mainly src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 9815d8567444b83fc0e6dc442b834260c95759ba Merge: ecdbae2b 9da1834c Author: Henri VINCENTI Date: Wed Feb 7 13:24:56 2018 +0000 Merged in picsar_memory_estimate (pull request #147) Picsar memory estimate commit 9da1834c1850a07c14d428f9a7f698d1ea6304a4 Author: Henri VINCENTI Date: Wed Feb 7 13:27:25 2018 +0100 Commented modules and subroutines src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/submain.F90 commit c79efff3d2acdb2b369ef1b7455ee334b95e2d32 Author: Henri VINCENTI Date: Wed Feb 7 13:07:52 2018 +0100 Added modules and subroutines for checking memory status and consumption during the simulation. The new module/routines allow monitoring: - Total memory occupied by particle arrays (tile structure) - Total memory occupied by grid arrays (Maxwell solver) src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/submain.F90 commit ecdbae2b61cb2c40d7318815a5c03fcde3163928 Merge: aa4033b0 3b5eca6d Author: Henri VINCENTI Date: Mon Feb 5 15:45:15 2018 +0000 Merged in debug_p3dfft_transpose (pull request #145) Debug p3dfft transpose - PLEASE DO NOT MERGE YET - commit 3b5eca6d39a175adda420f94594d9e316492e703 Merge: d5b043bf aa4033b0 Author: haithem kallala Date: Mon Feb 5 15:24:04 2018 +0100 fixing conflicts Merge branch 'master' into debug_p3dfft_transpose Conflicts: src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 commit d5b043bf4f33651ced94e5f43be6ca52ec288e99 Author: haithem kallala Date: Mon Feb 5 13:06:45 2018 +0100 finally debugging p3dfft now p3dfft gives the same results as local psatd if (nb_grp_x,n_grp_y,nb_grp_z of hybrid p3dfft) = (nprx,npry nprz of local psatd) (round to 0 machine ) src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit e81e4d25ba9b49e3ee242766fec65daa6bebc287 Author: haithem kallala Date: Mon Feb 5 11:41:30 2018 +0100 start looking for p3d shift bug src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 commit 2c32e035db69624726a746cf426ca9d26ea55019 Author: Henri VINCENTI Date: Thu Feb 1 11:12:06 2018 +0100 Removed useless p3d_offset variables in fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 2f368c558be272fa760ec3ab0d8bf1db38be3bad Author: Henri VINCENTI Date: Thu Feb 1 10:58:14 2018 +0100 Further cleaning and renormalization src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 commit b6d40483901121ea5d19785340db1aeafeb5b494 Author: Henri VINCENTI Date: Thu Feb 1 08:46:01 2018 +0100 Corrected little bug in group guard cells init Along X we have to fix nxg_group=nxguards as there is no groups along X at the moment (only local FFTs along that direction) src/parallelization/mpi/mpi_routines.F90 commit aa4033b01ebafc06f533604eb29db393949167cd Author: Remi Lehe Date: Wed Jan 31 14:04:12 2018 -0800 Remove trailing spaces and empty lines src/parallelization/mpi/mpi_routines.F90 commit f579cadc97a5b410c4310a730f329798ffd2936b Author: Remi Lehe Date: Wed Jan 31 13:46:18 2018 -0800 Remove trailing spaces and empty lines src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 9734dad261641035228988d1f450095155340240 Author: Henri VINCENTI Date: Wed Jan 31 21:40:47 2018 +0100 Simplified further mpi_routines.F90 src/parallelization/mpi/mpi_routines.F90 commit be447d963ceb258f0318bc9841d55cd968e8d6e5 Author: Henri VINCENTI Date: Wed Jan 31 21:32:24 2018 +0100 removed useless sanity checks on transpose flags src/parallelization/mpi/mpi_routines.F90 commit 2da5dc289be66fc379828dc6f5efc05d857227c8 Author: haithem kallala Date: Wed Jan 31 19:41:37 2018 +0100 fixing a bug occuring when ny != nz src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 commit 1fbbca91bae84f6c04881bee60aaf77d35c46048 Author: Henri VINCENTI Date: Wed Jan 31 18:42:07 2018 +0100 New input file in example_decks fortran examples/example_decks_fortran/laser_spectral_mpigroups.pixr commit 883a6fe72116ddde3b58b9bfaa2d11e7bcf4f600 Author: Henri VINCENTI Date: Wed Jan 31 18:24:27 2018 +0100 Modifs on kspace src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 2e612b289a430f2bcef6cc8529420617640c3493 Author: Henri VINCENTI Date: Wed Jan 31 18:22:41 2018 +0100 A lot of cleaning A lot of debugging: there was a confusion between local_ny of input and output FFT arrays When using fftw_mpi_transpose these two variables are different and were causing wrong results This has been corrected and different variables for starting indices/ FFT output and input array sizes have been defined. src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit cf44981779290b32b8a53d0a8ef94a417ecdec58 Merge: eb127eeb 5ede0c8d Author: Henri VINCENTI Date: Tue Jan 30 17:39:53 2018 +0100 Merged debug_master into master commit 5ede0c8de1a8a8c66272a9bfe93fb87741630c2e Author: Henri VINCENTI Date: Tue Jan 30 17:37:36 2018 +0100 Corrected a bug when user tries to define different values for nxguards and nxg_groups when using fftw_hybrid=.TRUE. This induces a bug at runtime. Now a Sanity check is done in mpi_routines.F90 src/parallelization/mpi/mpi_routines.F90 commit 7a88cadb1e48c8a86e9643933d86e9cf61f8bbc3 Author: haithem kallala Date: Tue Jan 30 16:32:28 2018 +0100 quick fix to master a bug occuring when not using p3dfft as a flag in compilation (picsar will not read group guardcell sizes (but they are already initialized by the value of regular guards) src/initialization/control_file.F90 commit eb127eeb47ba8e501002a18e72b7556468ade8c8 Merge: be447d5c a7251f7a Author: kallala NA Date: Mon Jan 29 21:14:27 2018 +0000 Merged in p3dfft_branch (pull request #143) integration of p3dfft - PLEASE DO NOT MERGE YET commit a7251f7accfd639ff2f4ef227a7927dd0a0d9cae Author: Henri VINCENTI Date: Mon Jan 29 19:15:44 2018 +0100 Corrected typos in cleaning src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit f41346942d309805d5d84311af4eea4cd381628c Author: Henri VINCENTI Date: Mon Jan 29 18:33:42 2018 +0100 Further cleaning src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 246a976a83314d3683b59c52faa1f93188fcd02f Author: Henri VINCENTI Date: Mon Jan 29 18:31:46 2018 +0100 Cleaning of fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 49742b339a5775b281eccfcd159ff740f8662c0b Author: Henri VINCENTI Date: Mon Jan 29 17:55:37 2018 +0100 Further cleaning src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 617301065af8b594d9663c8f317a7f0998a5e422 Author: Henri VINCENTI Date: Mon Jan 29 17:16:27 2018 +0100 Commented and cleaned init_kspace_3D.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 8b37a04dedf6b1e2acd69a5279a0dd6e80ae1ce3 Author: Henri VINCENTI Date: Mon Jan 29 16:32:16 2018 +0100 Cleaned and commented field boundary group exchanges routines src/boundary_conditions/field_boundaries.F90 commit ab8957fbe659f5fd275d55dfbd93566f12ceea92 Author: Henri VINCENTI Date: Sun Jan 28 17:40:42 2018 +0100 Cleaning src/housekeeping/load_balancing.F90 commit c4333811dac34d81fb60efa683515bb611debbc0 Author: Henri VINCENTI Date: Sun Jan 28 17:16:39 2018 +0100 Commenting and cleaning in mpi_routines.F90 and load_balancing.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 commit 64c141ab489419f4fb1b99af6dad065111e73c89 Author: haithem kallala Date: Sat Jan 27 02:33:40 2018 +0100 fixing a bug here src/housekeeping/load_balancing.F90 commit 781859fffd3cad142babc03ca8b5a87d519bf329 Author: haithem kallala Date: Thu Jan 25 15:56:38 2018 +0100 small fix to smilei src/init_external.F90 commit ead9e85d41879c0913552706c06421913911aeaa Author: haithem kallala Date: Wed Jan 24 20:59:02 2018 +0100 changing names of vars and adding comments to load balancing do not merge until tested (only debugged ) src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 49788d54fb6feb540e1b3200a14fbdd747fde218 Author: haithem kallala Date: Wed Jan 24 19:05:26 2018 +0100 bug fix in new random topo src/parallelization/mpi/mpi_routines.F90 commit 2676d4afdafc86b0480cc001afdb3ae1321f5220 Author: haithem kallala Date: Wed Jan 24 18:42:53 2018 +0100 debuging random comm src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 0c4bd863a6ee7c16f7b070323049a6e323df3ab6 Author: Henri VINCENTI Date: Wed Jan 24 13:06:18 2018 +0100 Added comments in load balancing src/housekeeping/load_balancing.F90 commit 51bd343fade4cf6cfe196bece99d316952312b89 Author: haithem kallala Date: Wed Jan 24 00:47:10 2018 +0100 more clear way to compute array of ranks src/housekeeping/load_balancing.F90 commit 7e4213acc2ff921eb780de3ea88f1868a834c9b2 Author: haithem kallala Date: Tue Jan 23 21:26:18 2018 +0100 fixing p3dfft_stride reading from input_file.pixr (until now only p3dfft_stride = true has been tested) src/initialization/control_file.F90 src/submain.F90 commit cc44efb70a2eb46b3333dee3d3377da2745b6dd4 Merge: 2a65dcd3 9ac2a303 Author: haithem kallala Date: Tue Jan 23 20:59:08 2018 +0100 Merge branch 'p3dfft_branch' of bitbucket.org:berkeleylab/picsar into p3dfft_branch commit 9ac2a3039676bac87c224f695a36993134961501 Author: Henri VINCENTI Date: Tue Jan 23 20:37:11 2018 +0100 Comments and cleaning src/parallelization/mpi/mpi_routines.F90 commit 1a5431f40df9eb0cc20027658758dce2a1cea24a Author: Henri VINCENTI Date: Tue Jan 23 18:30:34 2018 +0100 Commenting and cleaning src/parallelization/mpi/mpi_routines.F90 commit de8ec5d98504f9e994c102da1d8d33597241c3dc Author: Henri VINCENTI Date: Tue Jan 23 18:26:44 2018 +0100 Some more comments src/parallelization/mpi/mpi_routines.F90 commit 48b44ce4c5e9d2f030252aa1e51bd52268fad667 Author: Henri VINCENTI Date: Tue Jan 23 17:15:15 2018 +0100 Further cleaning src/parallelization/mpi/mpi_routines.F90 commit 332a36e0157918e018bbfc48c8f747a805fdcc84 Author: Henri VINCENTI Date: Tue Jan 23 16:36:59 2018 +0100 Added useful comments in the code Cleaning of setup_groups routine src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 2a65dcd34ac36820dc45c82dd9855632098ddf80 Author: haithem kallala Date: Tue Jan 23 14:12:19 2018 +0100 fixing alining src/housekeeping/load_balancing.F90 commit 37bafae7ed387c48a5e10b298555890bee8040ce Author: hkallala Date: Tue Jan 23 13:02:15 2018 +0000 changin p3dfft flag name to resolve a conflict with module name (only occurs with cray machine) src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/housekeeping/load_balancing.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 7ad4eaabe16c583031ed30fceae29286cbfa5f0a Author: haithem kallala Date: Tue Jan 23 12:44:47 2018 +0100 adding comments and changing names of vars src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 7c7975324bb18ea012d2fccbaa1942aa7b393c73 Author: haithem kallala Date: Tue Jan 23 11:55:25 2018 +0100 deleting useless is_lb_grp=false mode src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 6e0246ab3fad7954740139ed037e6d62b9715fd0 Author: Henri VINCENTI Date: Tue Jan 23 10:21:41 2018 +0100 Comments src/parallelization/mpi/mpi_routines.F90 commit 5c540307a836bcdde3627cf4a6941e179c8d35d8 Author: Henri VINCENTI Date: Mon Jan 22 18:11:30 2018 +0100 Cleaned setup_groups subroutine Added comments and clarifications to intermediate steps Comments will be added to the PR src/parallelization/mpi/mpi_routines.F90 commit 2a72549c36afa2132f6fd83c0bea68ef93462820 Author: haithem kallala Date: Mon Jan 22 14:42:17 2018 +0100 fixing shippable and adding more comments src/boundary_conditions/field_boundaries.F90 src/modules/modules.F90 commit 6cf5386ddde1094cd7f6031dc5d84adca7a816d3 Author: haithem kallala Date: Mon Jan 22 13:33:30 2018 +0100 correcting makefile Makefile commit f981655b295c407e5e7938f549ecf7751fd1ebe2 Author: haithem kallala Date: Mon Jan 22 13:30:01 2018 +0100 fixing nomenclature src/boundary_conditions/field_boundaries.F90 commit 9722c877e48880b7ddfdfc4fc746805af263a4dd Author: haithem kallala Date: Mon Jan 22 13:21:00 2018 +0100 fixing g_spectral src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 500a945a9c87a6c0c12661d17fdbc58563c030fc Author: haithem kallala Date: Mon Jan 22 13:07:37 2018 +0100 adding a routine to delete k space after init gpstd src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit f9fce11a4fdbe878ee97ffea41f33ef8ef90ecdf Author: haithem kallala Date: Mon Jan 22 13:01:04 2018 +0100 changing nomenclature src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 commit af717293086da5d633ae70dc3d7fcb88786f6ed5 Author: haithem kallala Date: Mon Jan 22 11:35:02 2018 +0100 using nkx , nky ,nkz vars src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 5d0152bf92e171642cb6664486831f720a5b9863 Author: haithem kallala Date: Mon Jan 22 11:31:23 2018 +0100 commenting src/housekeeping/load_balancing.F90 commit 38443959be902388412f5b0dddc3e6953c54c8cf Author: haithem kallala Date: Mon Jan 22 10:21:53 2018 +0100 fixing a problem in shippable (when compiling with p3dfft=false) src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 870606c5e3ba0ca7feba041e5f557e42ed2f1508 Author: haithem kallala Date: Mon Jan 22 04:45:13 2018 +0100 cleaning src/initialization/control_file.F90 src/main.F90 commit 0429bb21980963de559ab039a4a47928e949f74f Author: haithem kallala Date: Mon Jan 22 04:25:08 2018 +0100 changing names of routines src/housekeeping/load_balancing.F90 commit c18d5dfe6660bf99d3fa4e68ba99b49f07fe5a89 Author: haithem kallala Date: Mon Jan 22 04:23:13 2018 +0100 adding correction to if case of nprocy=nb_group_y src/housekeeping/load_balancing.F90 commit 2b0ce8a120d39d5765b9aaba4ea22941215ccd15 Author: haithem kallala Date: Mon Jan 22 04:18:56 2018 +0100 fixing shippable (precompiler directives added to check psatd or not) src/submain.F90 commit 97181858b350f66d2f7616aee9edec64f633b552 Author: haithem kallala Date: Mon Jan 22 04:15:16 2018 +0100 fixing makefile and deleting track comments Makefile src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 commit f7dc8e00abe0e6ac17992219a65f056017f8b954 Author: haithem kallala Date: Mon Jan 22 04:11:14 2018 +0100 fixing a bug src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 commit e16618780254b400976a68139217fab448e8636d Author: haithem kallala Date: Mon Jan 22 01:54:34 2018 +0100 p3dfft finally working src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 commit c40611fe64ab667f0b7355fae694c1fdd2ab9789 Author: haithem kallala Date: Sun Jan 21 18:35:58 2018 +0100 fixing groups in the new p3d implemetation now testing p3d src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 4df4099354ab3b9ee91a476b96f7f04587f85a6c Author: haithem kallala Date: Fri Jan 19 17:11:01 2018 +0100 still a bug to fix src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/initialization/control_file.F90 src/parallelization/mpi/mpi_routines.F90 commit 792601890d9e1ae519d7667e35d5dc02bb812cb4 Author: haithem kallala Date: Thu Jan 18 20:23:14 2018 +0100 p3d allmost fixed src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 9ad11aaaa54071d86cc011dd705328f0b5d34105 Author: haithem kallala Date: Wed Jan 17 16:31:12 2018 +0100 fixing a bug occuring when using previous version src/parallelization/mpi/mpi_routines.F90 commit 4a9770b50bee6115136d66d84dfdb7356513a600 Author: haithem kallala Date: Wed Jan 17 15:37:01 2018 +0100 adding p3dfft still debugging src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit b0e754021f51cb06eba331216542ae89bdf891b0 Author: haithem kallala Date: Tue Jan 16 12:36:50 2018 +0100 commit to p3dff branch : creation of plans, domain splitting src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/housekeeping/load_balancing.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 0f6603d3380c5f521acb0dce63596fa0e302a22a Author: haithem kallala Date: Tue Jan 16 10:48:34 2018 +0100 new branch for p3dfft, domain decomposition done src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/initialization/control_file.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit be447d5cbcb58a8cdffc0a5acd170caaf91c6386 Merge: c7dd0ac0 d40eeb9e Author: Henri VINCENTI Date: Mon Jan 15 16:30:53 2018 +0000 Merged in group_cleaning_bugs (pull request #142) Group cleaning bugs commit d40eeb9e970a9f01020a861d8ff8b8f305e66e63 Author: haithem kallala Date: Mon Jan 15 15:12:31 2018 +0100 fixing a conflict src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit c7dd0ac008a00515f50b70feaae172f00dc8671e Merge: a23fd1ab bab9b28d Author: Henri VINCENTI Date: Mon Jan 15 14:05:32 2018 +0000 Merged in clean_spectral (pull request #141) Removed subroutine delete_array (was deleting non allocated blocks and added a redundancy with init of cc_mat that already did a pre-check) commit 6014618ebb4c374b7907db970c4a581e9bd9558b Author: haithem kallala Date: Mon Jan 15 14:49:29 2018 +0100 compressing arrays for group comms( arrays for source /target ranks, mpi_dtypes, sizes_to_exchange etc ...) src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 commit 80961211b6b380cddc917f030e3f3167d56ebf5c Author: haithem kallala Date: Mon Jan 15 14:01:18 2018 +0100 optimizing comms src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/housekeeping/load_balancing.F90 commit bfc75e6417cf0c12e327c5ba1b5b940422df372c Author: haithem kallala Date: Mon Jan 15 12:28:17 2018 +0100 adding comments to module and load_balancing sections src/housekeeping/load_balancing.F90 src/modules/modules.F90 commit 33df0d1342c139c063d9d3bf7bdf2d7f8039c28d Author: haithem kallala Date: Mon Jan 15 12:05:08 2018 +0100 fixing a bug occuring in case of f-bound-check compilation (cell indexes to send recv between groups exceed field sizes even though target/source proc is null) src/housekeeping/load_balancing.F90 commit bab9b28d98e38419cd7d8c30ba6dbc2e653f23ce Author: Henri VINCENTI Date: Mon Jan 15 11:24:29 2018 +0100 Removed subroutine delete_array (was deleting non allocated blocks and added a redundancy with init of cc_mat that already did a pre-check) src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit a23fd1ab2f4b05404600404d589024e275097718 Merge: 84f5c4ae e09209ad Author: kallala NA Date: Mon Jan 15 09:16:27 2018 +0000 Merged in new_general_lb (pull request #140) New general lb commit e09209ad016cdc082795a395f1b2225a8c9a6b7b Author: haithem kallala Date: Fri Jan 12 14:43:44 2018 +0100 optimizing comms for groups src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 commit 9efe177d7720a21f2eb46ee65eb1bb88204ae253 Author: haithem kallala Date: Thu Jan 11 17:50:22 2018 +0100 correct previous src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 022bc30c416925c24636fee75d3f9fd6d4a3003e Author: hkallala Date: Thu Jan 11 14:58:47 2018 +0000 further optimizations to this branch src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 530e31c7c1a9746a52042c96600f65a4c9169596 Author: Haithem Kallala Date: Mon Dec 18 11:12:14 2017 +0100 adding use statements and fixing send recieve type sizes into int_isp to avoid errors in some plateforms src/boundary_conditions/field_boundaries.F90 commit 463730a957f2aa2ba1490e4b26492765273cbf07 Author: haithem kallala Date: Thu Dec 14 11:50:04 2017 +0100 adding g_spectral flag to use multply mat_vector routine (but this routine is not optimized) src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/initialization/control_file.F90 src/modules/modules.F90 commit 0a7097cb53619c65b51c0a8988365a0aad6234bd Author: haithem kallala Date: Thu Dec 14 00:44:53 2017 +0100 deleting barrier src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 7cdb8a18c1a208c2c9c8931865fc1df056af87cf Author: haithem kallala Date: Thu Dec 14 00:41:28 2017 +0100 cleaning src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 6d1db257cf0e6ca8a9e1c526c5e80af3e6795f8d Author: haithem kallala Date: Thu Dec 14 00:31:40 2017 +0100 correcting a bug in send recv blocking with unbalanced comms between groups (old bug) src/boundary_conditions/field_boundaries.F90 commit 5d450582325e85b9dac69285a7c5d67b153ccd38 Author: haithem kallala Date: Thu Dec 14 00:12:32 2017 +0100 cleaning src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit bbe2c5d9f6904890263005dc074771d815ded600 Author: haithem kallala Date: Wed Dec 13 20:14:40 2017 +0100 cleaning src/boundary_conditions/field_boundaries.F90 commit 34f7274ed9452ac69bb7b0b2ca939c17dbf55d8c Author: haithem kallala Date: Wed Dec 13 20:09:56 2017 +0100 cleaning and adding an array for group non blocking comms requests src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 commit 1b954fdd53cd6498616893a50eb7d56edc882738 Author: haithem kallala Date: Wed Dec 13 19:25:56 2017 +0100 fixing bgu in coms (non blocking) src/boundary_conditions/field_boundaries.F90 commit 9e94ae4918e2a7f1b43c13e2e506c399d033c1a0 Author: haithem kallala Date: Wed Dec 13 19:25:45 2017 +0100 changing a var name src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit e1e2cfdad2a18ea7c36543e4adb2efa8470af525 Author: haithem kallala Date: Wed Dec 13 18:45:17 2017 +0100 clealing src/housekeeping/load_balancing.F90 commit 9eded589ac669973808d83a0e2d9d22e44440afe Author: haithem kallala Date: Wed Dec 13 18:44:01 2017 +0100 cleaing src/housekeeping/load_balancing.F90 commit 1edddf440a6fd892144be7fd71d0367a150ac02d Author: haithem kallala Date: Wed Dec 13 18:39:16 2017 +0100 deleting controls src/housekeeping/load_balancing.F90 commit c6c3305fbe881607c5ebce5e2d2666d2896116eb Author: haithem kallala Date: Wed Dec 13 17:53:47 2017 +0100 fixing names src/boundary_conditions/field_boundaries.F90 commit 795e228b89bbc1744ef95e9c0500d380459075b8 Author: haithem kallala Date: Wed Dec 13 17:45:22 2017 +0100 fixing text src/boundary_conditions/field_boundaries.F90 commit 2dd751771ea77326a8ac6edc07a942d37992ca80 Author: haithem kallala Date: Wed Dec 13 17:40:21 2017 +0100 adding non blocking comsm src/boundary_conditions/field_boundaries.F90 commit dcd8edc11658a4040f50094fb6d1d91e6ee7ea8a Author: haithem kallala Date: Wed Dec 13 15:34:11 2017 +0100 correct ci src/housekeeping/load_balancing.F90 commit 48a3ac6fa5c34c6b8af1143fb674e4b1c8e1268f Author: haithem kallala Date: Wed Dec 13 13:29:45 2017 +0100 fixing text src/housekeeping/load_balancing.F90 commit e03eb8b712b12d3f819716126431439c976bb034 Author: haithem kallala Date: Wed Dec 13 13:21:26 2017 +0100 fixing Makefile Makefile commit af9bce88f4dc266ba14bd40e8675ae613ffec11f Author: haithem kallala Date: Wed Dec 13 12:57:58 2017 +0100 fixing makefile Makefile commit 82ef003c251870e41fd9e402bd9d452b0c9694a9 Author: haithem kallala Date: Wed Dec 13 12:26:32 2017 +0100 trying to fix ci Makefile src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 commit 053727d363710358b5655ca834659483907aac10 Author: haithem kallala Date: Wed Dec 13 12:02:15 2017 +0100 fixing pr src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 commit 71b1b4d7585ecc3a8fddcc53e9916095c70486bc Author: haithem kallala Date: Tue Dec 12 16:43:02 2017 +0100 deleting extra copies after mpi comms src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 commit cf6e5b6ce31926b0e15460185e2b51916cd86f40 Author: haithem kallala Date: Tue Dec 12 16:29:34 2017 +0100 deleting coeff_norm multiplication from psatd, now, cc_mat matrix take into account normalization src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 67cc9368317796e1e733148060718996d0f19a1e Author: haithem kallala Date: Tue Dec 12 15:57:55 2017 +0100 cleaning files deleting old lb src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 625f8f754debbe6620b1bb468896b3680eb1cf72 Author: haithem kallala Date: Tue Dec 12 15:42:56 2017 +0100 fix ci src/boundary_conditions/field_boundaries.F90 commit 8d97a645a214d0b933e7ee8a4f760ef06d0f7fc5 Author: haithem kallala Date: Tue Dec 12 15:32:11 2017 +0100 fiixing ci src/boundary_conditions/field_boundaries.F90 commit e9079287b03b2337d2808b27f938c2e5c61e85fe Author: haithem kallala Date: Tue Dec 12 15:24:10 2017 +0100 fixing conflict src/init_external.F90 commit c120bf395100b5ec73aeffef6f00c12184f12746 Author: haithem kallala Date: Tue Dec 12 15:23:14 2017 +0100 adding correction to smilei src/init_external.F90 commit e324049eefa4896e5d4b0440b1afd8a855c3a75b Author: haithem kallala Date: Tue Dec 12 15:21:26 2017 +0100 fix conflict src/init_external.F90 commit c684e0758a119c78e32119b0396e34cc2b37b0b1 Author: haithem kallala Date: Tue Dec 12 15:19:28 2017 +0100 fixing conflict with smilei src/init_external.F90 commit bd50db32c9c0ef89e2ea574b0a160324ceae3cae Author: haithem kallala Date: Tue Dec 12 15:16:23 2017 +0100 add Makefile Makefile commit e2f95ca44f8e76879ff43b3396746071648e53c1 Author: haithem kallala Date: Tue Dec 12 15:11:53 2017 +0100 checkout here src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit 03f4faa3360c886ff448c06bbfbb50807a841e34 Author: haithem kallala Date: Tue Dec 12 14:43:21 2017 +0100 checkout here for validated 2d src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 commit 8733d7b3c07999b512f5eebc5af03c8e9c676afa Author: haithem kallala Date: Tue Dec 12 12:27:00 2017 +0100 checkout here in case of pb src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 547163d9ef3628df8ecb46c42ea6b9e4a2b9e076 Author: haithem kallala Date: Mon Dec 11 12:42:34 2017 +0100 checkout here src/parallelization/mpi/mpi_routines.F90 commit eeaf99c9ef5d850a09e7c2765e4c66b9ad3007c7 Author: haithem kallala Date: Mon Dec 11 12:06:29 2017 +0100 checkout from here src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 commit ee15eecb41706e5b547b46301c5591a9d808b767 Author: haithem kallala Date: Mon Dec 11 10:10:15 2017 +0100 checkout this commit in case of prblms src/init_external.F90 commit fb9384056117614959843ecebcf3601d99d045f6 Author: haithem kallala Date: Thu Dec 7 19:13:10 2017 +0100 lb solver finaly works! src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit 0c19a8fd8eba40879bf887e610f42a8652d28d85 Author: haithem kallala Date: Thu Dec 7 16:21:03 2017 +0100 may be working now src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 3f309b8e909380095b1919442f2d22060cfe7268 Author: haithem kallala Date: Thu Dec 7 15:33:07 2017 +0100 still debuggin src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 7d18c4156f53ded79aaa8f44cd802f74f5d83414 Author: haithem kallala Date: Tue Dec 5 17:16:11 2017 +0100 debuging src/boundary_conditions/field_boundaries.F90 commit 84f5c4aef254ff37632e83d7f9e8296fd82adc3e Merge: 558e843c 2cf7c9ac Author: kallala NA Date: Tue Dec 5 11:53:23 2017 +0000 Merged in bug_spot_spectral (pull request #139) K-vec error commit cfb5054c2a4bb242d7cc69fdfa44b2510dee6914 Author: haithem kallala Date: Tue Dec 5 12:36:19 2017 +0100 still debugging src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 commit 558e843c10eaaa46df27ba385edf95dbbb0741ae Merge: a1e552a6 d4951c2c Author: Remi Lehe Date: Tue Dec 5 11:01:22 2017 +0000 Merged in names_in_vay_pusher (pull request #138) Use more consistent notation in the Vay pusher commit 66ab387398e702b366cf5e846f8f5060342ff57c Author: haithem kallala Date: Tue Dec 5 04:27:25 2017 +0100 still debugging src/housekeeping/load_balancing.F90 commit 9242ec0e97fa4c829578abc53d638319f6038496 Author: haithem kallala Date: Tue Dec 5 04:09:15 2017 +0100 still debugging src/boundary_conditions/field_boundaries.F90 src/housekeeping/load_balancing.F90 commit 1ac72b0ebcdddfbd23d14549255b36c8561d87a7 Author: haithem kallala Date: Tue Dec 5 01:18:11 2017 +0100 save and start debug src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 237d25a2535425cacf69584822b217b476525d55 Author: haithem kallala Date: Mon Dec 4 23:53:29 2017 +0100 saving src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 2cf7c9acd529951a3d4678583fda94e6b29ba519 Author: haithem kallala Date: Mon Dec 4 17:07:24 2017 +0100 adding l_staggered = TRUE in smilei link file src/init_external.F90 commit 9d5f38f6d53b4c2b7a3b747614b59a0bde5a2f91 Author: haithem kallala Date: Mon Dec 4 17:02:43 2017 +0100 correcting bug src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit aa87bc210ce28012e678588882463e6670db2c2c Author: haithem kallala Date: Mon Dec 4 17:00:14 2017 +0100 quick fix for spectral src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit d4951c2cc26e8d265a5c380a9b39822fca8fa059 Author: Remi Lehe Date: Sun Dec 3 12:12:03 2017 -0800 Use more consistent notation in the Vay pusher src/particle_pushers/vay_pusher/vay_3d.F90 commit 407e6c9c9b47ac76063581ef0c7b2d85351a3cdb Author: haithem kallala Date: Sat Dec 2 06:02:47 2017 +0100 new branch for generalized group balancing src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit a1e552a68f5a6c386407d461a513341db661150c Merge: 4ccbcfd9 52e3b85c Author: kallala NA Date: Thu Nov 30 16:42:56 2017 +0000 Merged in picsar_load_balancing_groups (pull request #137) Picsar load balancing groups commit 52e3b85cdb3855ad9e5e74575610d05cb5a48a03 Author: haithem kallala Date: Thu Nov 30 15:55:04 2017 +0100 removing extra space src/boundary_conditions/field_boundaries.F90 commit 1749c81a5fda960b4602b8ab5b9a85db40406482 Author: haithem kallala Date: Thu Nov 30 15:21:03 2017 +0100 cleaning this pr src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 73f6b331b9f30468bbc0d61677baccffd71ff40a Author: haithem kallala Date: Thu Nov 30 02:33:26 2017 +0100 improving field bc src/boundary_conditions/field_boundaries.F90 commit 99d1bc907f53e27b47c658802ae2f0ed38e6b82f Author: haithem kallala Date: Thu Nov 30 00:50:44 2017 +0100 cleaning bcs src/boundary_conditions/field_boundaries.F90 commit d98fdd0a28c161a222e277f0fb90a9aed0ce9bf4 Author: haithem kallala Date: Thu Nov 30 00:20:28 2017 +0100 fixing comms (come back here in case of pblems) src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 2f4e996f89d364ee25f0444c146a0d839c833c8b Author: haithem kallala Date: Wed Nov 29 23:57:06 2017 +0100 adding mpi blocking coms src/boundary_conditions/field_boundaries.F90 commit 387bc889a662254c2389aa558a2e07ca3fe5c51f Author: haithem kallala Date: Wed Nov 29 19:12:23 2017 +0100 quick fix src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 4ccbcfd9528a435a6b9a3cf9f8e39112a3dbe2b8 Merge: 61f9e807 1e7fd092 Author: Maxence Thevenet Date: Wed Nov 29 16:25:53 2017 +0000 Merged in performance_script (pull request #133) Performance script Approved-by: Henri VINCENTI commit 8fc83f620f48e230df50632f9e7971305ab34682 Author: haithem kallala Date: Wed Nov 29 17:24:46 2017 +0100 cleaning hybrid fft : there is nolonger hybrid_2 flag (fftw_hybrid deals with nprocx and nprocy to know what to do) examples/example_decks_fortran/plane_wave_test.pixr examples/example_decks_fortran/plane_wave_test_2d.pixr src/init_external.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 212d6e222002923b64196c3da5a2940cfe5d3dc5 Author: haithem kallala Date: Wed Nov 29 16:58:08 2017 +0100 cleaning fourier_psatd src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit a29cb533d8735b547ed5c03e0d26dc90bca408f1 Author: haithem kallala Date: Wed Nov 29 16:31:30 2017 +0100 cealing in fourier_psaotd src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 25c58ceefdbc915637fbf941d546dab96a8dc2ba Author: haithem kallala Date: Wed Nov 29 15:22:53 2017 +0100 cleaning src/housekeeping/sorting.F90 commit 0d9b1c6a4b3f8581a8ba0f7cb89b4d6a4a6f3347 Author: haithem kallala Date: Wed Nov 29 15:20:29 2017 +0100 cleaning src/boundary_conditions/field_boundaries.F90 commit 6d5971b2ccefa0d9810b775192019c36240314b2 Author: haithem kallala Date: Wed Nov 29 15:14:07 2017 +0100 deleting barrier src/parallelization/mpi/mpi_routines.F90 commit 12338c4240f609d3e9549f28d2acce02929e18a6 Author: haithem kallala Date: Wed Nov 29 15:11:08 2017 +0100 adding comments to maxwell_solver_manager src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 57d788ee584a8471eb3aec6dce6b4524f43d6fc1 Author: haithem kallala Date: Wed Nov 29 15:07:25 2017 +0100 adding comments to field boundaries src/boundary_conditions/field_boundaries.F90 commit fba97434a1fb271ed246d1e496aa2e7cb4431914 Author: haithem kallala Date: Wed Nov 29 14:57:54 2017 +0100 commenting mpi routine load balancing section src/parallelization/mpi/mpi_routines.F90 commit 7819c96bc8bd8203a6c11407a063bddba5d48294 Author: haithem kallala Date: Wed Nov 29 14:42:39 2017 +0100 adding comments on arrays indexes section in modules.F90 src/modules/modules.F90 commit 61f9e8077b30fdafe4cf67b387489edbe29b829f Merge: f78becbb f1a4cab5 Author: kallala NA Date: Wed Nov 29 12:05:39 2017 +0000 Merged in new_pxr2d (pull request #135) new clean branch for 2d full fortran pxr commit f1a4cab58c04b4c3fc6fff9cdf3621aa7b0fe4e5 Author: haithem kallala Date: Wed Nov 29 11:53:06 2017 +0100 standard output only in proc 0 src/init_external.F90 commit dfb711ace10937798801226bf132b34bcd5b03aa Author: haithem kallala Date: Wed Nov 29 11:50:50 2017 +0100 modif yee.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 commit 3d402623bc6711576502348fead1edf027a7fb41 Author: haithem kallala Date: Tue Nov 28 14:41:42 2017 +0100 adding sorting in 2 d src/housekeeping/sorting.F90 src/submain.F90 commit d946d47a4df2fd86f87d76b5dbcfe1a0b2073a05 Author: haithem kallala Date: Tue Nov 28 12:41:47 2017 +0100 adding sizes in subroutine call src/boundary_conditions/field_boundaries.F90 commit 390bce06d192a4ef0fefbc52543cd629d1a651df Author: haithem kallala Date: Tue Nov 28 04:03:30 2017 +0100 deleting barriers src/boundary_conditions/field_boundaries.F90 src/parallelization/mpi/mpi_routines.F90 commit 97c4b1944d20ed140c6e8d5b5b10ff769a5ae762 Author: haithem kallala Date: Tue Nov 28 03:56:53 2017 +0100 fixing a pb src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 49aaa9169045dcffb755290b2ae41220d05de0aa Author: haithem kallala Date: Tue Nov 28 03:43:32 2017 +0100 foptimizeing src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit c84fed98f7b1aa1be8734ad677f7af3f2332dadb Author: haithem kallala Date: Tue Nov 28 02:53:59 2017 +0100 fixing CI src/boundary_conditions/field_boundaries.F90 src/parallelization/mpi/mpi_routines.F90 commit 64d09df35d382bbc27b7aaaa7ebf9ca5de973c06 Author: haithem kallala Date: Tue Nov 28 02:29:30 2017 +0100 now load balancing properly working(tested with 2d ) src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 76264dfc0217b3c248c9db72eca325be63f50916 Author: haithem kallala Date: Tue Nov 28 00:44:59 2017 +0100 come back here in case of prblems src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit c761e50c624571281f010cc6ee10fe99cfa24d80 Author: haithem kallala Date: Mon Nov 27 19:59:47 2017 +0100 debuging load balancing src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit fb8ae2b7f25f4e685bf0774dadf7cbff0643c391 Author: haithem kallala Date: Mon Nov 27 19:23:15 2017 +0100 small fix src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 8b2ecafd1bde1f9c783388a1b42219bc5fa8865b Author: haithem kallala Date: Mon Nov 27 19:08:54 2017 +0100 add pre compiler flags to compile in prod mode src/boundary_conditions/field_boundaries.F90 commit ab558ffb0d51241754e299b74242bd79de96be8c Author: haithem kallala Date: Mon Nov 27 19:00:43 2017 +0100 added all exchanges begin debug src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 296d65e9ff499698c83c941fba11e4f8cf689723 Author: haithem kallala Date: Mon Nov 27 18:13:28 2017 +0100 new structs for load balancing src/boundary_conditions/field_boundaries.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 11850c26f5cadf4f6b39fc7e682f769d8a9cf981 Author: haithem kallala Date: Mon Nov 27 14:47:46 2017 +0100 new get field routine and starting exchanges src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit f23ec97df39b768e54bcdca1870d651a46bb9b71 Author: haithem kallala Date: Sat Nov 25 20:56:13 2017 +0100 cleaning src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 6c61ec5df0f4e9d32d815f1043f0b40381a87760 Author: haithem kallala Date: Sat Nov 25 18:37:24 2017 +0100 fixing seg fault src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 896dc86b6dfef26fd4b6e60631dab3e7088daa13 Author: haithem kallala Date: Fri Nov 24 19:17:56 2017 +0100 first commit in load_balancing groups boundary index computation src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 0baa9745494543ad7b1a65c3594d102ecc504260 Author: haithem kallala Date: Fri Nov 24 13:37:16 2017 +0100 adding 2d test input file examples/example_decks_fortran/plane_wave_test_2d.pixr commit fab017ae034573c4bcf46f71e62db3b9f52a471c Author: haithem kallala Date: Fri Nov 24 12:54:00 2017 +0100 fixing comments in 2d test Acceptance_testing/Gcov_tests/maxwell_2d_test.F90 commit 6c57d35db97012324774d91326f8994cfa7f5c24 Author: haithem kallala Date: Fri Nov 24 12:51:35 2017 +0100 fix src/parallelization/tiling/tiling.F90 commit 8953f022dccf7ef32d30d2feef657ca531f894cd Author: haithem kallala Date: Fri Nov 24 12:43:01 2017 +0100 adding 2d laser test for psatd and fdtd solvers Acceptance_testing/Gcov_tests/maxwell_2d_test.F90 Makefile shippable.yml src/parallelization/mpi/mpi_routines.F90 commit 82f555c2ea235d71790a382ab62a29e2d3be4fb4 Author: haithem kallala Date: Fri Nov 24 11:36:46 2017 +0100 new clean branch for 2d full fortran pxr src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/init_external.F90 src/ios/simple_io.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/submain.F90 utils/postprocessing/Field.py utils/viewer2d.py commit f78becbb0e08f0166857a95132d382bf9039a951 Merge: cda92ca1 748c4eed Author: kallala NA Date: Thu Nov 23 12:20:21 2017 +0000 Merged in test_laser_antenna_spectral (pull request #134) adding laser tests in spectral (with different configurations) Approved-by: Henri VINCENTI commit 748c4eed7382c21f0e9889ae1262df06ef17b1e2 Author: haithem kallala Date: Thu Nov 23 10:42:20 2017 +0100 adding a test with order 8 in psatd Makefile commit 39200ed25e60ff9ba0347696d065391c886b48e3 Author: haithem kallala Date: Thu Nov 23 10:28:49 2017 +0100 commenting src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 7d4b02eee6dc0667593ea1804d1e4f49eab4de18 Author: haithem kallala Date: Thu Nov 23 10:23:44 2017 +0100 fixing this merge request Acceptance_testing/Gcov_tests/maxwell_3d_test.F90 Makefile examples/example_decks_fortran/plane_wave_test.pixr commit e47bd90302a0919f25aabde284cc443032801765 Author: haithem kallala Date: Thu Nov 23 10:08:08 2017 +0100 small fixes here src/diags/diags.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 737e7309e95b0b9f652ecc08d9b20fde5c202aa9 Author: haithem kallala Date: Thu Nov 23 10:03:31 2017 +0100 fixing test and removing costly spectral tests Makefile examples/example_decks_fortran/plane_wave_test.pixr commit 880b4d7a4a967373f2b0c660e8d890ea3e563a1d Author: haithem kallala Date: Wed Nov 22 17:19:59 2017 +0100 fixing makefile Makefile commit e6ebc2c7ed0b86e56e0089725f78fe8b3bb6d202 Author: haithem kallala Date: Wed Nov 22 16:07:21 2017 +0100 fixing read from cl src/initialization/control_file.F90 commit bf7a1f0abff2dd7c6077b08533c18bbf19a0cef8 Author: haithem kallala Date: Wed Nov 22 15:48:04 2017 +0100 correcting makefile Makefile commit 68ea9b11696f8dccf8bb7b33366a63099f5f7cec Author: haithem kallala Date: Wed Nov 22 15:43:42 2017 +0100 correcting makefile Makefile commit 02af8310a2ada49794fa0b917c8563469ee6e823 Author: haithem kallala Date: Wed Nov 22 15:43:04 2017 +0100 adding makefile Makefile commit 855f6f6bf999d9010b5a193b43911222200cc4d2 Author: haithem kallala Date: Wed Nov 22 15:39:51 2017 +0100 adding laser tests in spectral (with different configurations) Acceptance_testing/Gcov_tests/maxwell_3d_test.F90 examples/example_decks_fortran/plane_wave_test.pixr src/initialization/control_file.F90 commit 1e7fd092f0efb2aa81d0e3f76bf70e4952d5ff4b Author: mthevenet Date: Tue Nov 21 08:52:05 2017 -0800 minor fix in the docstring performance_tests/run_alltests_1node.py commit 8b1a5e03261ec5cd7851d24ed9b26a510e8d6944 Author: mthevenet Date: Tue Nov 21 08:26:42 2017 -0800 minor fix performance_tests/run_alltests_1node.py commit cda92ca1f4c5fce2376ad87a9b554f266b3327fd Merge: 6bfc4492 658e308f Author: Guillaume Blaclard Date: Fri Nov 17 19:21:22 2017 +0000 Merged in update_doc (pull request #131) Update the installation docs to match with the "new" picsar changes Approved-by: Maxence Thevenet Approved-by: Remi Lehe commit 658e308f81e3a04781e4a547d053760eb934b9b4 Author: Guillaume Blaclard Date: Thu Nov 16 17:39:44 2017 -0800 Add extra space for lisibility Installation_doc/Python/INSTALL_PYTHON_CORI.md commit e1e8095fad178272ccc24bfac8218f4d5adab3bd Author: Guillaume Blaclard Date: Thu Nov 16 17:38:38 2017 -0800 Update comments 2 Installation_doc/Python/INSTALL_PYTHON_CORI.md commit 92984db07c444eab974aa143d3899848a39fab08 Author: Guillaume Blaclard Date: Thu Nov 16 17:22:57 2017 -0800 Update to take into account Maxence's comments Installation_doc/Python/INSTALL_PYTHON_CORI.md Installation_doc/Python/INSTALL_PYTHON_EDISON.md commit d35b2df5fc410eee369c5788f88b98eea36438bf Author: Maxence Thevenet Date: Fri Nov 17 01:10:47 2017 +0000 INSTALL_PYTHON_CORI.md edited online with Bitbucket Installation_doc/Python/INSTALL_PYTHON_CORI.md commit f683ccf5167e74bedb15eabadd73ec400b943f6d Author: Maxence Thevenet Date: Fri Nov 17 01:08:12 2017 +0000 minor change Installation_doc/Python/INSTALL_PYTHON_CORI.md commit 4e836f4e706ca8953ee923bb35b23b6c135cc36d Author: Guillaume Blaclard Date: Thu Nov 16 16:38:17 2017 -0800 Update the Makefile_Forthon doc to include the ./configure command Installation_doc/Python/INSTALL_PYTHON_CORI.md Installation_doc/Python/INSTALL_PYTHON_EDISON.md commit 0fa4fe6ef896201547d5e86545bf54d63b400008 Author: mthevenet Date: Thu Nov 16 14:25:29 2017 -0800 minor fixes after debug phase performance_tests/perf_test2 performance_tests/run_alltests_1node.py commit 6bfc44925e46ccf93863b4ee2fd71f60fa19f971 Merge: 0cd308aa e3f39054 Author: kallala NA Date: Thu Nov 16 17:53:14 2017 +0000 Merged in quick_fix_pspectral (pull request #128) quick fix for spectral solver commit 0cd308aa249ccf64c3c0c8fdccaf762d50b27079 Merge: ed7bee09 3556bd9d Author: Henri VINCENTI Date: Thu Nov 16 17:43:42 2017 +0000 Merged in test_maxwell_gaussian (pull request #132) Unit Test maxwell solver commit 77732eb9fdb7056ca4f7f5fc17b98021c2d120ad Author: mthevenet Date: Thu Nov 16 09:37:38 2017 -0800 specific makefile for performance tests performance_tests/Makefile_perftest commit da6e9dad67013c3e27c93cabcc87aa421a6dfe64 Author: mthevenet Date: Thu Nov 16 09:22:25 2017 -0800 update performance script with more general file names performance_tests/run_alltests_1node.py commit 3556bd9d548bccf3e3abae002d733474687fe149 Author: Henri VINCENTI Date: Thu Nov 16 18:13:31 2017 +0100 Corrected typo in shippable shippable.yml commit 0745d3068408dc064718a943c11a85fd2f4ff67a Author: Henri VINCENTI Date: Thu Nov 16 18:03:22 2017 +0100 Added unit tests for Maxwell solver for a plane monochromatic laser wave Acceptance_testing/Gcov_tests/maxwell_3d_test.F90 Makefile examples/example_decks_fortran/plane_wave_test.pixr shippable.yml src/initialization/control_file.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit e3f390543e14c41b8cfabe6a920c0125554117c3 Author: haithem kallala Date: Thu Nov 16 17:08:07 2017 +0100 quick fix src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/initialization/control_file.F90 commit 6fe0e5a9c9c1b99879f2476994cbef3d373f9817 Author: Guillaume Blaclard Date: Tue Nov 14 11:58:15 2017 -0800 Update the installation docs to match with the "new" picsar changes Installation_doc/Python/INSTALL_PYTHON_CORI.md Installation_doc/Python/INSTALL_PYTHON_EDISON.md Installation_doc/Python/INSTALL_PYTHON_LINUX.md Installation_doc/Python/INSTALL_PYTHON_MACOS.md commit 9d07c35c63e3c84a4fe8f26c4d6728ac19c14092 Author: mthevenet Date: Mon Nov 13 09:01:26 2017 -0800 script for automated performance tests on 1 node performance_tests/Makefile_perftest performance_tests/perf_test1 performance_tests/run_alltests_1node.py commit ed7bee09f495cd47bf189cedfa6cba049a07c597 Merge: 2779d65a 75099366 Author: Guillaume Blaclard Date: Fri Nov 10 21:46:34 2017 +0000 Merged in get_quantity_pxr (pull request #108) Rewrite the function get_quantity in Fortran for PXR particles Approved-by: Maxence Thevenet commit 7966407f2e8eb29488ea9c13ced6d49517e0a43a Author: haithem kallala Date: Fri Nov 10 15:46:32 2017 +0100 adding a warning in case local_nz = 0 or local_ny = 0 src/parallelization/mpi/mpi_routines.F90 commit 1fecf43413ccd6afe6a7774de1414169be3456cb Author: haithem kallala Date: Fri Nov 10 15:21:20 2017 +0100 adding a usefull comment src/submain.F90 commit decf263db098f5b0af5d0df8878684e4aef65615 Author: haithem kallala Date: Fri Nov 10 12:54:33 2017 +0100 fixing a bug in group comms onyl occuring when nb_groups = mpi_tasks src/boundary_conditions/field_boundaries.F90 commit 725f8ac7052d8ccfa8ffe840e3063c204fab507e Author: haithem kallala Date: Tue Oct 31 00:55:36 2017 +0100 quick fix for spectral solver it seems there is a small mistake I just noticed src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit d8a842d2f289a443d4f246e94132bc6cdc1280b9 Author: Henri VINCENTI Date: Thu Oct 26 18:31:33 2017 +0200 Added unit tests for Maxwell solver Acceptance_testing/Gcov_tests/maxwell_3d_test.F90 Makefile examples/example_decks_fortran/gaussian_test.pixr src/initialization/control_file.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 2779d65aef442edd773a20173187e67e797f87cb Merge: 86ee3955 4dc094fb Author: Remi Lehe Date: Thu Oct 26 16:21:58 2017 +0000 Merged in correct_lower_bounds (pull request #127) Correct bounds in loops to add jxcells/jycells/jzcells to main array commit 4dc094fbc42b5a2fddaabfd2d9d45f632b8dc616 Author: Remi Lehe Date: Thu Oct 26 07:41:34 2017 -0700 Correct another set of bounds src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 6a081584c792aef41e218eef4110bdb39819b713 Author: Remi Lehe Date: Wed Oct 25 22:34:41 2017 -0700 Correct upper bound src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 3a4036fd3f9e3a91c0c31488b015ad8087512236 Author: Remi Lehe Date: Wed Oct 25 22:32:26 2017 -0700 Correct lower bounds in deposition functions src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 86ee3955b54719b102fcb658f378f27fda755778 Merge: 1d4a0999 eadd6b8f Author: Henri VINCENTI Date: Wed Oct 25 08:24:48 2017 +0000 Merged in fix_macosx_compile_issues (pull request #126) MACOSX COMPILE BUG with gcc>7.0 commit eadd6b8f3854f7ac36af29b7aa4247858eb2b6a3 Author: Henri VINCENTI Date: Tue Oct 24 16:34:32 2017 +0200 Temporarily removed SIMD DECLARE instructions in laser_pusher_manager that were causing issues on MACOSX with gcc>7.0 src/particle_pushers/laser_pusher_manager_3d.F90 commit 1d4a09993ed5eba9be542e6d80b917ffa911ee76 Merge: bb168d32 2d0ca93b Author: kallala NA Date: Tue Oct 24 14:32:28 2017 +0000 Merged in fixing_shippable (pull request #125) fixing shippable.yml commit 2d0ca93bb4c80ec48cff2acbad58807f126ec28e Author: Henri VINCENTI Date: Tue Oct 24 16:01:12 2017 +0200 Corrected bugs preventing Forthon compilation and shippable tests failure - In laser_pusher_manager, blank lines were causing parsing errors - in modules.F90, removed parsing of FFT group modules src/modules/modules.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit ab6bfb2c4583ec7740adb3b111502a5cce1c6350 Author: haithem kallala Date: Tue Oct 24 15:35:52 2017 +0200 fixing shippable.yml test shippable.yml commit bb168d32f6f7dd9ff4bdb6ea781c9228db4c5a0f Author: Henri VINCENTI Date: Tue Oct 24 15:05:14 2017 +0200 Corrected submain module 'use' src/submain.F90 commit 5df45af3f67a5c6a60568a1f3687ce48875fd2df Merge: d07428a5 6d96e13d Author: Henri VINCENTI Date: Tue Oct 24 14:34:42 2017 +0200 Merge branch 'gpstd_group' commit d07428a55867a97f4dcce5de0f39e67ab9e09a97 Merge: 227805e6 7751db29 Author: kallala NA Date: Tue Oct 24 08:53:03 2017 +0000 Merged in fix_bug_intel_laser (pull request #124) fixing bug intel in laser push commit 227805e6df834207722c844c19ce466b5ebb8b5b Merge: cbe24817 d7aca362 Author: kallala NA Date: Tue Oct 24 08:52:29 2017 +0000 Merged in debugging (pull request #120) Debugging laser routines commit 7751db2945dd3a4f9cf0f6fa7e3214ae61909159 Author: haithem kallala Date: Tue Oct 24 10:36:13 2017 +0200 fixing bug intel in laser push src/particle_pushers/laser_pusher_manager_3d.F90 commit 6d96e13d43bbcf04bca4cab1d6798a056bce9799 Author: haithem kallala Date: Mon Oct 23 17:51:58 2017 +0200 still trying to fix diags bug it seems we need an mpi_barrier before diags creation src/diags/diags.F90 commit f1b176d0c8ec40f0c5d10dbaa3b7d370dd633517 Author: haithem kallala Date: Mon Oct 23 17:09:26 2017 +0200 fix src/diags/diags.F90 commit ee26ef5b0db8139e9962dde11b0c0254dc019986 Author: haithem kallala Date: Mon Oct 23 17:05:15 2017 +0200 fix bug in diags src/diags/diags.F90 commit 9360fe37ea9237995ea03a047afd248e9b02516d Author: haithem kallala Date: Mon Oct 23 16:50:29 2017 +0200 cleaning src/parallelization/mpi/mpi_routines.F90 commit 0224dffb123a4eb2166309c2d18fba2e05b1249d Author: haithem kallala Date: Mon Oct 23 16:48:37 2017 +0200 cleaning src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 84f26cbfaffc3098783d6e7a3e90172ab0fcf997 Author: haithem kallala Date: Mon Oct 23 16:38:21 2017 +0200 cleaning src/parallelization/mpi/mpi_routines.F90 commit 15088c5780152e2201f3dc3ebd6cce2aa738b9e7 Author: haithem kallala Date: Mon Oct 23 16:35:54 2017 +0200 cleaning src/parallelization/mpi/mpi_routines.F90 commit 6169c5a10b6bcf0b75bb3510483e14e3e48abe0e Author: haithem kallala Date: Mon Oct 23 16:28:19 2017 +0200 cleaning src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 5b44adb51155f1f78fe33f6c23866f90460b1729 Author: haithem kallala Date: Mon Oct 23 11:56:24 2017 +0200 cleaning src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/submain.F90 commit 8e649e74e92ea91980732a6e5293325c4486ad37 Author: haithem kallala Date: Mon Oct 23 11:47:01 2017 +0200 clean src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit f742f0dcd83b0db46d7a8362d21f5f3da9388b60 Author: haithem kallala Date: Mon Oct 23 11:43:46 2017 +0200 claening src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit f7a6329e56cad6596af0c39036bdcb94fe26b1b5 Author: haithem kallala Date: Mon Oct 23 11:37:42 2017 +0200 cleaning src/modules/modules.F90 commit 1469c359e76bf398ea66db99cf795641dcec47bd Author: haithem kallala Date: Mon Oct 23 11:34:52 2017 +0200 cleaning src/submain.F90 commit 8cb436667d630b3ec26bedebc961fea41ad25e7e Author: haithem kallala Date: Mon Oct 23 11:33:41 2017 +0200 cleaning src/submain.F90 commit 58226ec2f4fce7cf9334f850eac27d0913523d85 Author: haithem kallala Date: Mon Oct 23 11:32:31 2017 +0200 cleaning src/submain.F90 commit 23c139eec3f193aaeddcd7a1d4f02d61ad528579 Author: haithem kallala Date: Mon Oct 23 11:29:52 2017 +0200 cleaning src/submain.F90 commit b23d8574a75db7787348377d9745f617fbdaba60 Author: haithem kallala Date: Mon Oct 23 11:28:21 2017 +0200 cleaning src/submain.F90 commit 55824d146b56298c2752bb652913a46696bf9b5e Author: haithem kallala Date: Mon Oct 23 11:27:29 2017 +0200 cleaning src/submain.F90 commit 52a058f2596464429f9bec505fcb775ff8d32ce5 Author: haithem kallala Date: Mon Oct 23 11:26:09 2017 +0200 cleaing src/submain.F90 commit 6ba22343faad9768154a9ebfd698755480a9dfa5 Author: haithem kallala Date: Mon Oct 23 11:24:21 2017 +0200 cleaning src/submain.F90 commit 4a97ef4912b8fb6573565f0c921170daa6df8339 Author: haithem kallala Date: Mon Oct 23 11:19:33 2017 +0200 cleaning src/submain.F90 commit adab48cb8831cf37a0ccdc0172a33523788f6580 Author: haithem kallala Date: Mon Oct 23 11:12:38 2017 +0200 cleang src/modules/modules.F90 commit f3c5cfb5fcd769d15d694e3bae900fbc67ccc034 Author: haithem kallala Date: Mon Oct 23 11:11:13 2017 +0200 cleaning src/main.F90 commit 1e2c9f884e1a32b38f939e24047f4081a58b1c28 Author: haithem kallala Date: Mon Oct 23 11:09:46 2017 +0200 claning src/ios/simple_io.F90 commit d28391efab3dd5fe9670d060c2a956cecdcc2090 Author: haithem kallala Date: Mon Oct 23 11:07:33 2017 +0200 cleaning src/particle_pushers/particle_pusher_manager_2d.F90 commit 99964dd7911ed7c73875f07515bebbec35222273 Author: haithem kallala Date: Mon Oct 23 11:03:53 2017 +0200 cleaning src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit cf8aeec3121686fd878dfc05c7c5e0518f16d8f5 Author: haithem kallala Date: Mon Oct 23 10:55:36 2017 +0200 adding makefile Makefile commit 432923ea25fad600f10d286e3c9d23497563922d Author: haithem kallala Date: Mon Oct 23 10:48:59 2017 +0200 cleaning src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit d8e0aca3738e4dcde16e8ab2e616fe14900f0df0 Author: haithem kallala Date: Mon Oct 23 10:48:00 2017 +0200 fixxing a comment src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit d3f633d82070ee73dd1c5963e62c18d190f0a6e8 Author: haithem kallala Date: Mon Oct 23 10:46:14 2017 +0200 diags src/diags/diags.F90 commit 0e240e946731f6df5f72893043d5b17ef5fb646d Author: haithem kallala Date: Mon Oct 23 10:44:37 2017 +0200 /bin/bash: q: command not found src/diags/diags.F90 commit 80f8de84183c51525f691ab7ff25fbe8324c8fb2 Author: haithem kallala Date: Mon Oct 23 10:43:04 2017 +0200 diags src/diags/diags.F90 commit a1302ad08e5259e5be16b31c8fbcd49f579187ed Author: haithem kallala Date: Mon Oct 23 10:41:34 2017 +0200 fixing diags src/diags/diags.F90 commit 6a7949d3ab89ac1e776b228368ffa74a391b5854 Author: haithem kallala Date: Mon Oct 23 10:38:57 2017 +0200 correct diags src/diags/diags.F90 commit c165b31ca0326c0ad386c97322a02af76c5b5103 Author: haithem kallala Date: Mon Oct 23 10:26:30 2017 +0200 fixing fastfft file src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 commit 183e7bc23e8ca868c538bb7e3481ef3d1a2fb352 Author: haithem kallala Date: Mon Oct 23 02:48:19 2017 +0200 commit src/initialization/control_file.F90 commit 7ca4da7d06b96fe3e9fb9a03e39217d5544449cf Author: haithem kallala Date: Mon Oct 23 02:47:00 2017 +0200 deleting g_spectral related routine src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 242598f686b0641d38e87744b591a179ca72252c Author: haithem kallala Date: Mon Oct 23 02:46:16 2017 +0200 commit src/initialization/control_file.F90 commit 40aa48c7f888a18b9bd9aa2bdbbcc4be0465c279 Author: haithem kallala Date: Mon Oct 23 02:43:59 2017 +0200 commit src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 6e131f8d491c0cfcd31edd6a893b14553ba02632 Author: haithem kallala Date: Mon Oct 23 02:41:51 2017 +0200 commit src/boundary_conditions/field_boundaries.F90 commit 58e59e4e14a5b5028a5de0744ede9b76d54d550c Author: haithem kallala Date: Mon Oct 23 02:40:10 2017 +0200 deleting sparsing src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 commit f15033fac270ae7fc9ce9b7e810afb47d3956505 Author: haithem kallala Date: Mon Oct 23 02:37:47 2017 +0200 fixing comment in gpstd.f90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 commit c5f773b53c7ef2ccaadbc86e1c03b87c579a9154 Author: haithem kallala Date: Mon Oct 23 02:36:45 2017 +0200 fixing comments src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 commit 15293ca4e76c7b80cdb16587ec9c008cf4ba39cf Author: haithem kallala Date: Mon Oct 23 02:33:58 2017 +0200 deleting visu.py from git visu.py commit 1fa74da53a046450590dc69b9f8566fee6c65464 Author: haithem kallala Date: Mon Oct 23 02:32:39 2017 +0200 trying to fix a conflict src/parallelization/mpi/mpi_routines.F90 commit 383ef7652f0c60034a8c6c473694525852f98305 Author: haithem kallala Date: Mon Oct 23 02:29:56 2017 +0200 trying to fix a conflict src/parallelization/mpi/mpi_routines.F90 commit c3fb8271184ffe2d0a29bd0ae6287ab531598b73 Author: haithem kallala Date: Mon Oct 23 02:24:41 2017 +0200 trying to fix another conflict src/parallelization/mpi/mpi_routines.F90 commit 349171a04a142dc9c853eca2b13e96fc2ae08af4 Author: haithem kallala Date: Mon Oct 23 02:17:43 2017 +0200 still trying to fix a conflict src/modules/modules.F90 commit 1620004d4d9e3d542e74da405f86bbe177b5e961 Author: haithem kallala Date: Mon Oct 23 02:15:57 2017 +0200 trying to fix a conflict src/modules/modules.F90 commit 3d29d6e10f83a2da4eb0cbfea4d4da6eeaff5848 Author: haithem kallala Date: Mon Oct 23 02:13:54 2017 +0200 fixing a comment src/modules/modules.F90 commit 6c996b3a7ee3dbb79383e813b4aca702ff2a6130 Author: haithem kallala Date: Mon Oct 23 02:13:04 2017 +0200 deleting Vphi src/modules/modules.F90 commit a387acc498d2efffb25ee244271efdaa9c0fdb57 Author: haithem kallala Date: Mon Oct 23 02:12:03 2017 +0200 deleting g_spectral src/modules/modules.F90 commit 42e9d0f088538c5f4d5d0edc036244e003237d35 Author: haithem kallala Date: Mon Oct 23 02:10:40 2017 +0200 deleting other .py files PyLoadArrayPicsar.py examples/example_decks_fortran/fftw_groups_mpi.pixr plot_field_picsar.py commit b63fd8adbb31cac9651b68883134a1346bc07dc9 Author: haithem kallala Date: Mon Oct 23 02:09:31 2017 +0200 deleting Field.py Field.py commit 6471bd4f8a3364eaecab78bd7bfa3d682176b66f Author: haithem kallala Date: Mon Oct 23 02:04:19 2017 +0200 fixing a conflit with part_pusher_manager3d in master src/particle_pushers/particle_pusher_manager_3d.F90 commit eaac98cd18569853d5861e460834f36c7a1bc423 Author: haithem kallala Date: Mon Oct 23 02:01:23 2017 +0200 deleting ldodepos_charge/current src/initialization/control_file.F90 src/modules/modules.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 41c793dcf9a3526a3da551174ff55f0ee3d86784 Author: haithem kallala Date: Mon Oct 23 01:56:52 2017 +0200 small fix src/particle_deposition/charge_deposition/charge_deposition_manager.F90 commit 0c583a977efc18aae129a3dc2ec11884668bb86e Author: haithem kallala Date: Mon Oct 23 01:30:12 2017 +0200 adding subroutine name to end subroutine and deleting some unused variables src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/init_external.F90 src/initialization/control_file.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 605d6d12ce5c2cf4f660e66353e0255031a5dacc Author: haithem kallala Date: Mon Oct 23 00:56:03 2017 +0200 parsing and deleting commented lines also fixing laser for intel vecto also adding fftw plans detroyer to main.F90 completely deleting g_spectral flag from picsar now pushing f_fields is done through the loop in fourier_psaotd.F90 src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/init_external.F90 src/initialization/control_file.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/particle_pushers/kin_energy.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/submain.F90 utils/fortran_parsers/indent_file.py utils/fortran_parsers/justify_file.py commit b8a9e9b45a16500c911f2d07064b9b620ae642bc Author: haithem kallala Date: Fri Oct 20 15:36:04 2017 +0200 solving name conflicts 2.0 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit b795801b381818c73b3d38d34d801278f0de8496 Author: haithem kallala Date: Fri Oct 20 15:34:30 2017 +0200 solving name conflict src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/submain.F90 commit cbe248171adf527178cafab0499e43f207e155a9 Merge: a7edbb25 85123729 Author: kallala NA Date: Fri Oct 20 12:52:17 2017 +0000 Merged in correcting_laser (pull request #117) Correcting laser commit d7aca36230f4bb8d013648ba2838838b90055e87 Author: haithem kallala Date: Fri Oct 20 14:25:12 2017 +0200 quick fix src/parallelization/tiling/tiling.F90 commit 5b824032aad76d847ee14cc8f62192330a3bd98b Author: haithem kallala Date: Fri Oct 20 14:20:08 2017 +0200 prefix this branch src/initialization/control_file.F90 src/modules/modules.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 8512372995bffdcfee65cac64806263cb049c1db Author: haithem kallala Date: Fri Oct 20 14:01:31 2017 +0200 ffixing laser gaussian profile src/particle_pushers/laser_pusher_manager_3d.F90 commit 30993d7a9fb786dc38d7f044c65765fcd6fdc9ab Author: haithem kallala Date: Fri Oct 20 13:53:19 2017 +0200 fixing laser vecto src/particle_pushers/laser_pusher_manager_3d.F90 commit 6000853e6c159bb15a978d1d3c8e5e5883503d5e Author: haithem kallala Date: Fri Oct 20 13:36:12 2017 +0200 fixing laser vecto src/particle_pushers/laser_pusher_manager_3d.F90 commit 2206895de0721e5b3fe684f5467e153740c9e478 Author: haithem kallala Date: Fri Oct 20 13:19:41 2017 +0200 fixing blank lines src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 commit 6148992d6cbed499897bb11af7d3adf2b04c8c93 Author: haithem kallala Date: Fri Oct 20 12:28:48 2017 +0200 changing contributors.md CONTRIBUTING.md commit b1950a1fe6549dccfae3ee0d977a2ae40a102bfc Author: haithem kallala Date: Fri Oct 20 11:05:20 2017 +0200 correcting last commit src/particle_deposition/charge_deposition/charge_deposition_manager.F90 commit ef1c2091e37b6d78c0443c2c9fbd8c37d83249b3 Author: haithem kallala Date: Fri Oct 20 10:59:14 2017 +0200 deleting ldodepos_charge ldodepos_current flags src/initialization/control_file.F90 src/modules/modules.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 3d197652ba6cd0b0fdd434533882b34aafbff5a9 Author: haithem kallala Date: Fri Oct 20 10:48:40 2017 +0200 fixing laser part index src/parallelization/tiling/tiling.F90 commit b5dd04eb860c700185cb06d0190a205f042f05a3 Author: Henri VINCENTI Date: Fri Oct 20 10:21:00 2017 +0200 Added current init flag control.F90 src/initialization/control_file.F90 commit 21818545cb88e8aa0d8fe32e21c41826542b3d45 Author: haithem kallala Date: Thu Oct 19 17:35:03 2017 +0200 coorecting a small bag in getting norder src/init_external.F90 commit 4e4ce3a3441410875745192d475bc949fae4d2ad Author: haithem kallala Date: Thu Oct 19 17:20:04 2017 +0200 optimizing linking with smilei src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/init_external.F90 commit a80c2c3848d1f8da0943d5b9a8d79ac04c6c9775 Author: haithem kallala Date: Thu Oct 19 15:41:56 2017 +0200 fixing fft transforms in case of library src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/init_external.F90 commit 6a3e0f16b7c4e85ba6e79479fa8bc7563ed56bb9 Author: haithem kallala Date: Thu Oct 19 12:58:34 2017 +0200 linking fdtd solver to smilei src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/init_external.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 7e0c8bfd18039a4264194456fc9e1a7efdae7dc9 Author: haithem kallala Date: Wed Oct 18 15:43:08 2017 +0200 fixing hamming gate src/particle_pushers/laser_pusher_manager_3d.F90 commit e2429b14bf6ac1345177defec2deebb8a052f53a Author: haithem kallala Date: Wed Oct 18 14:39:55 2017 +0200 fixing group comms src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 4750ad8d747d61efbfa3c6520dd2190a84cc29cc Author: haithem kallala Date: Wed Oct 18 11:43:27 2017 +0200 correcting vecto laser src/particle_pushers/laser_pusher_manager_3d.F90 commit 986fb27da20640f558ba4f813e2ca51c428ce3f7 Author: haithem kallala Date: Mon Oct 16 15:17:33 2017 +0200 adapting to smilei when lib compil src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 283b627762ff00ddb2471bfdebe46da9edf9957e Author: haithem kallala Date: Mon Oct 16 15:07:00 2017 +0200 adding init spectral matrix to link file src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/init_external.F90 commit 137da4144a2f0609b566fa669b184d2cafe9997c Author: haithem kallala Date: Mon Oct 16 10:25:19 2017 +0200 correcting makefile Makefile commit dd29cfe6db2dc150f6452660da3eac50fcf38830 Author: haithem kallala Date: Mon Oct 16 10:24:26 2017 +0200 adding makefile for lib compil Makefile commit bb5ce1956a3c0239b5675d9c3b8255143dc05ccd Author: haithem kallala Date: Fri Oct 13 15:04:04 2017 +0200 module for external init src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/init_external.F90 commit 5c89f9e0b0a52b3c58ba776e44556aa3bca65d8e Author: haithem kallala Date: Fri Oct 13 14:21:24 2017 +0200 adding a flag to set clight eps0 mu0 to 1.num in case of lib compiling src/init_external.F90 src/modules/modules.F90 commit b2361ae0248863dfd7805f9ec5f007892e004aa5 Author: haithem kallala Date: Fri Oct 13 14:01:40 2017 +0200 adding a link file to smilei src/init_external.F90 src/ios/simple_io.F90 commit eaa9f5aaa4deba7b26612d864ab0a72163398c34 Author: haithem kallala Date: Fri Oct 13 13:07:05 2017 +0200 adding c binding to some routines src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit f3b101bdb202764a1b84a08868e9b95c380ff49b Author: haithem kallala Date: Wed Oct 11 15:18:54 2017 +0200 cleaning field exchange group src/boundary_conditions/field_boundaries.F90 commit d85da09bc291ba0b33171bed139c3ff8b0c942dc Author: haithem kallala Date: Tue Oct 10 17:33:20 2017 +0200 correcting an error in gpstd src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 405f39dee63ea9af1b341a12750b629d41626899 Author: haithem kallala Date: Tue Oct 10 16:17:29 2017 +0200 adding hanning gate to laser (temporal_window=1) (gaussian : temporal_window = 0 ) src/initialization/control_file.F90 src/modules/modules.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit c35615ff378d26094dd20141a099f65c4f022323 Author: haithem kallala Date: Mon Oct 9 22:37:59 2017 +0200 correcting a small bug that only appears with intel compil src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit b3f8c12cd3e6078d0ee000040af849c1b2f4af2d Author: haithem kallala Date: Mon Oct 9 22:07:18 2017 +0200 using open mp in Kspace init src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 17ee7a1ff1995e28cd3705b496230e8bb059cb3b Author: haithem kallala Date: Mon Oct 9 22:00:24 2017 +0200 FInally fftw transpose works fine gain of about 25% in fft time src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 074b2d579b611495b16eb498fe7459d282f1fb27 Author: hkallala Date: Mon Oct 9 13:11:26 2017 +0000 adding blocking comms for grp(not working till now) src/boundary_conditions/field_boundaries.F90 src/main.F90 commit a0cc5a557f12e89d462511620732300166513268 Author: hkallala Date: Mon Oct 9 11:56:24 2017 +0000 correcting tag in mpi com grp src/boundary_conditions/field_boundaries.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit f9b2a50f63f348e8318ce0b33eac5f6238368952 Author: hkallala Date: Sat Oct 7 16:54:07 2017 +0000 correcting a bug in group splitting src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit 9e299da2f8a21a7b60dd22da901390bc76eaa223 Author: hkallala Date: Wed Oct 4 08:01:01 2017 +0000 correcting memory and adding comments src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/tiling/tiling.F90 commit 36418930043f148b6af9acdb2abb67a74717f656 Author: hkallala Date: Tue Oct 3 13:27:21 2017 +0000 optimizing push spectral src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/particle_pushers/kin_energy.F90 src/submain.F90 commit a7edbb25435e2fc4ec6e41a107ad0808272415a6 Author: Remi Lehe Date: Mon Oct 2 15:26:29 2017 -0700 Corrected some typos in Bibtex references Doxygen/pages/latex_theory/allbibs.bib commit 00b82645f23de4924fbe69115be86def79c23bb5 Author: haithem kallala Date: Fri Sep 29 17:09:53 2017 +0200 add laser src/particle_pushers/laser_pusher_manager_3d.F90 commit bfa095d110f279e987e8e8ebe60824d1d33afadc Author: haithem kallala Date: Fri Sep 29 17:08:41 2017 +0200 test in kine src/particle_pushers/kin_energy.F90 commit 72a064e6afec88d392e9f18db41860f01df24107 Author: haithem kallala Date: Fri Sep 29 16:38:35 2017 +0200 correcting vecto for laser push and kin_e src/particle_pushers/kin_energy.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit e8f82d8cce04da299fe68033f5db6c323dbede75 Author: haithem kallala Date: Fri Sep 29 12:00:45 2017 +0200 correcting a bug that prevents run on over 8 cores src/diags/diags.F90 src/ios/simple_io.F90 src/submain.F90 commit 73751488a3975bbd872bb4c4bc40819975976165 Author: haithem kallala Date: Thu Sep 28 18:35:52 2017 +0200 adding probe files Field.py PyLoadArrayPicsar.py plot_field_picsar.py visu.py commit 1a660909d97cfe4141e79dc7875dd4a3aed3d70f Author: haithem kallala Date: Wed Sep 27 18:33:41 2017 +0200 minor changes src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/modules/modules.F90 src/submain.F90 commit 0cdccce3ad6006f99bcba541eb0a1c4204d4b2ba Author: haithem kallala Date: Wed Sep 27 17:37:06 2017 +0200 correcting divb computation routine src/diags/diags.F90 commit 2aa8501b9c0243d2e8aa97494db46bbb2cbb54c6 Author: haithem kallala Date: Wed Sep 27 17:18:52 2017 +0200 adding a Poisson solver with periodic bc for l_spectral domain decomp only src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit cbcfb52dd9b6cf10c0d05f4ffacfa8a11ea46777 Author: haithem kallala Date: Wed Sep 27 16:01:14 2017 +0200 adding a proper routine to compute divb src/diags/diags.F90 src/ios/simple_io.F90 commit 6bd4d9826305040508988f1a7ed8fcf9316d3eac Author: haithem kallala Date: Wed Sep 27 15:50:32 2017 +0200 adding divb test src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/initialization/control_file.F90 src/ios/simple_io.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 4999e7d5054842b3970af341e395bb26935c967b Author: haithem kallala Date: Wed Sep 27 14:36:25 2017 +0200 adding charge communications src/submain.F90 commit 37feff1c85555577fdf3d1212f4daf3e4fce0b38 Author: haithem kallala Date: Wed Sep 27 13:49:21 2017 +0200 adding divj test src/initialization/control_file.F90 src/ios/simple_io.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit df3cff3e7860dde5ce96486d18fdb1658078b873 Author: haithem kallala Date: Wed Sep 27 11:26:10 2017 +0200 deleting useless lines src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 4c30e1c057c7f898bebdf2d75763f8f788862002 Author: haithem kallala Date: Wed Sep 27 11:23:40 2017 +0200 additional comments in laser section src/parallelization/tiling/tiling.F90 commit a0c451e8a0b09f0b1dd40f80a96826b92362b473 Author: haithem kallala Date: Tue Sep 26 16:07:55 2017 +0200 adding submain file src/submain.F90 commit 002f08d997b5aad8d21d10df9f16d32ac31322c6 Author: haithem kallala Date: Tue Sep 26 16:03:33 2017 +0200 adding kin_energy routine file src/particle_pushers/kin_energy.F90 commit 37ac0965ce1f387fdfec6993765d215c35820ebc Author: haithem kallala Date: Tue Sep 26 15:38:21 2017 +0200 adding compute kine and elec_e routines Makefile src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 commit fd4635c1caea56d91e00a4d0e04864615e3c5bb9 Author: haithem kallala Date: Mon Sep 25 18:15:27 2017 +0200 deleting commented line src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit a58f8fd7b16bed9da3e1b3ffe48998adfed15ab1 Author: haithem kallala Date: Mon Sep 25 18:09:26 2017 +0200 adding a timer for mpi group comm src/boundary_conditions/field_boundaries.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 1bed5c22c50b233d662a4cf601ddae2ce8edb003 Author: haithem kallala Date: Mon Sep 25 16:23:41 2017 +0200 adding new makefile Makefile commit 61ccdcda8566d44811580cc3527f062901b28a89 Author: haithem kallala Date: Mon Sep 25 12:18:33 2017 +0200 correcting a small bug occuring in case one group = one mpi task src/parallelization/mpi/mpi_routines.F90 commit d5da36e048927bfc232559034bc67e84081d07ed Author: haithem kallala Date: Sun Sep 24 17:29:55 2017 +0200 adding external changes to picsar_group branch : ez_p,ex_p, ... are added to module.F90 and copying new fieldgathering routines into gpstd_group branch src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit d776a06e2916aec139f74b96cd127c3a3c2dd346 Author: haithem kallala Date: Fri Sep 22 17:54:34 2017 +0200 commenting useless lines src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit fd65d8ef42a002e2b163e4aa8a04fcde5734dc9c Author: haithem kallala Date: Fri Sep 22 16:05:56 2017 +0200 adding a test for groups examples/example_decks_fortran/fftw_groups_mpi.pixr commit 67b00cfb5b45ed430d260f65ffdc5be154bb5ee6 Author: haithem kallala Date: Fri Sep 22 16:03:46 2017 +0200 now it's possible to decompose the domain in x and y direction, groups contain (1x1xgroup_size) mpi tasks, fftw_mpi are still parallelizing through the z direction src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit c2c741bdca93ba0dc8b1e7c8589e628f9373d6e0 Author: haithem kallala Date: Wed Sep 20 16:48:35 2017 +0200 coorecting precision src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit af34021b208ac15d62b44f278db9ad9bb9fc2128 Author: haithem kallala Date: Wed Sep 20 16:45:32 2017 +0200 correcting precision in logfactorial src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 6112e6406341d0a7f1db0e3c7f11e2e9d4b80412 Author: haithem kallala Date: Wed Sep 20 16:06:30 2017 +0200 minor issue correction src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit c1085fb9b2b015046bb719f6dd8947f3a3cd11fd Author: haithem kallala Date: Wed Sep 20 15:46:08 2017 +0200 veryfing automatic tests src/submain.F90 commit 0c84311b77d884e402ee250a19cdc28dbc054ba8 Author: haithem kallala Date: Wed Sep 20 14:19:52 2017 +0200 fixing python compiling src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 1d19bf84e8024d5004e2c67b4571ba766b28b0d2 Author: haithem kallala Date: Wed Sep 20 11:29:50 2017 +0200 fixing tests with shippable src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 03cd85724c2f933b287078c3057d8d90e8653fb2 Author: haithem kallala Date: Wed Sep 20 11:13:26 2017 +0200 adding a proper makefile Makefile commit 70d5382110d96de1301fe1d237b4c7e7e4206b95 Author: haithem kallala Date: Wed Sep 20 11:11:31 2017 +0200 deleting comments src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit aee1005a82cf81d3ce415bf4ea6aef97f7d53072 Author: haithem kallala Date: Wed Sep 20 11:06:03 2017 +0200 debbuged communications between groups now groups work correctly src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit 3ac01718a9a11429a07670772adba38dafbb2989 Author: haithem kallala Date: Tue Sep 19 14:43:49 2017 +0200 trying to fix comms return to this commit in case of pblems (next I will change size(ex_r)=(nx_grid,ny_grid,nz_grid) src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit ec15f06019189e3d79dc43694df1cf7acdd7bf27 Author: haithem kallala Date: Mon Sep 18 17:23:57 2017 +0200 return to this commit in case of prblems src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit d13baa9a1ced0b3776a2f2e0ce786bd0049790f3 Author: haithem kallala Date: Mon Sep 18 16:26:20 2017 +0200 trying to fix comm grp src/boundary_conditions/field_boundaries.F90 src/parallelization/mpi/mpi_routines.F90 commit f1c5ccbbd6054d01ece9a2558c0dc30cdc699396 Author: haithem kallala Date: Mon Sep 18 16:12:06 2017 +0200 adding comms for groups src/boundary_conditions/field_boundaries.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit ce01e130efb486b3fea19b4264056716a14018e0 Merge: 0ad1ab00 722eccfa Author: Remi Lehe Date: Mon Sep 18 13:58:22 2017 +0000 Merged in 3rd_order_deposition (pull request #113) Generalize 3rd order vectorized deposition to arrays of arbitrary size. commit 0ad1ab0055409956a065a720618e0d184bb05e2d Merge: ab76b19f 7dd7de9a Author: Remi Lehe Date: Mon Sep 18 13:53:36 2017 +0000 Merged in tighter_bounds (pull request #112) Correct bounds of loops in order 1 deposition routines commit ab76b19f5539377e1022ae624fe42dee2e9517fa Merge: db72c2c8 894ee068 Author: Remi Lehe Date: Mon Sep 18 13:51:31 2017 +0000 Merged in adapt_shapes (pull request #111) Generalize 2nd order vectorized deposition to arrays of arbitrary size. commit de9f9289fa74dd1556cda29a4eafb3fddb0b64e6 Author: haithem kallala Date: Mon Sep 18 13:45:32 2017 +0200 deleting comments src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 4fbeea93a636ae84f535e897e35a1b6fbd3d79b2 Author: haithem kallala Date: Mon Sep 18 11:20:21 2017 +0200 groups working properly now src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit da7c2d9e65345b9a07b6358b91e3d2dfe9455fe9 Author: haithem kallala Date: Fri Sep 15 15:50:58 2017 +0200 fixing groups src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 3a02e9997731a964111dc4d1dabfc8545051131c Author: haithem kallala Date: Wed Sep 13 17:29:24 2017 +0200 correcting bugs with standard mpi and gpstd src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit db72c2c89a00efeea6918c037aeeb551090f4460 Merge: cb86ac44 13ff4541 Author: Henri VINCENTI Date: Wed Sep 13 15:06:10 2017 +0000 Merged in cor_NCI (pull request #122) Cor NCI commit 13ff4541b6b888181ea2e875ee1befbfd739ab76 Author: Jean-Luc Vay Date: Wed Sep 13 04:26:22 2017 -0700 Adjusted names of auxiliary fields to avoid confusion with 'exp' keyword. src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit cc626ce612b90808892dba038e7d57f4d755ee82 Author: Jean-Luc Vay Date: Wed Sep 13 04:15:26 2017 -0700 Added auxilliary field arrays for gather to particles. src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit 5ff9aac5a76262f4c920a994d330c5975c5d4260 Author: haithem kallala Date: Fri Sep 8 14:46:15 2017 +0200 still fixing trp src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 commit 089eebff68513788cd234ad1dac45fd8d40abe2b Author: haithem kallala Date: Fri Sep 8 11:15:48 2017 +0200 trying to fix transpose mpi src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 commit afa4571233ae86f5bccb6d20c3ca87d9b646ec3a Author: haithem kallala Date: Fri Sep 8 02:42:57 2017 +0200 deleting a comment src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 136b84527da569f9eb2f033c5974ea27681c60d3 Author: haithem kallala Date: Fri Sep 8 02:06:49 2017 +0200 fixed mpi fft src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit 0020c1c4ef6f0ed885ac3f01d823e74bbc6a4c59 Author: haithem kallala Date: Fri Sep 8 00:33:26 2017 +0200 fixing a bug in transpose src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit 3d28b47982152613ee497cba7b6baa2a1cc8dd27 Author: haithem kallala Date: Fri Sep 8 00:25:47 2017 +0200 trying to fix transose src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/parallelization/mpi/mpi_routines.F90 commit cf482a70547389b8fccfed7240768c7c2153ce4a Author: haithem kallala Date: Thu Sep 7 23:59:03 2017 +0200 push src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit d33f501269c7c22d244c6dbea875e23ed2907a9d Author: haithem kallala Date: Thu Sep 7 15:46:11 2017 +0200 adding fftw_with_mpî src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit e6df9d8c71b3a7ba0ef56508414fb83bf22f08a1 Author: haithem kallala Date: Thu Sep 7 06:38:01 2017 +0200 adding fftw_transpose params src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit e0accd3d42dc2e90859f9f53a78c9f99bac0e3b6 Author: haithem kallala Date: Thu Sep 7 04:51:50 2017 +0200 setting sizes in a versatile way src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/submain.F90 commit 894dd54df1b0cb5fba73a5c04d3bf4cf9ec8c3d4 Author: haithem kallala Date: Wed Sep 6 21:26:02 2017 +0200 loading dx dy dz dt from module src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/submain.F90 commit 0414eda3536dd8c955b563a723d2d804e6cd965d Author: haithem kallala Date: Wed Sep 6 21:11:16 2017 +0200 function k_vec src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit f59f7b88ac7948ac9371d69666dc16125173ff36 Author: haithem kallala Date: Wed Sep 6 20:05:27 2017 +0200 last push for gptsd now psaotd doesn't exist because it s broken src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 06762683468b215782a2ad9bafa05148ba826e1b Author: haithem kallala Date: Wed Sep 6 18:19:18 2017 +0200 adding a makefile Makefile commit 68cd98a439b1a7f24520b40f73cd7de2960f20ea Author: haithem kallala Date: Wed Sep 6 18:15:57 2017 +0200 correcting another bug in psaotd src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 9fb6cd9924384252c36c7aa521399b89552e7b9c Author: haithem kallala Date: Wed Sep 6 18:04:17 2017 +0200 now psaotd works properly Makefile src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/submain.F90 commit ba67c94821df641ad809cbb9bc8ad224d7240186 Author: haithem kallala Date: Wed Sep 6 12:58:15 2017 +0200 fixing psaotd src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/submain.F90 commit 619842231d5ed4a7939a7b7230e395b82b9e4ffe Author: haithem kallala Date: Tue Sep 5 15:18:55 2017 +0200 correcting a bug in fourier_psaotd init src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 2148eed26cf318c21608b19e730d54ce29ba127e Author: haithem kallala Date: Tue Sep 5 15:05:46 2017 +0200 correcting a bug in ini_kspace src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit e48195da46a44700c25cc0f6ff98ed5d49afb9a5 Author: kallala Date: Tue Sep 5 01:34:59 2017 +0200 deleting fd_weight_hvincenti and loading it from fourier_psaotd src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 commit bfe768a3cd2c6fcad03241bbeb03742e38643a8b Author: haithem kallala Date: Mon Sep 4 23:43:53 2017 +0200 testing gpstd src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/submain.F90 commit 9eb1aa32ac25d6542f7a20d1e78ef23b8ab7f70d Author: haithem kallala Date: Mon Sep 4 18:36:13 2017 +0200 adding gpdtd solver src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/GPSTD_solver/init_kspace_3D.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit af4d41c10665c6c30a854660468b02ebe28b3268 Author: haithem kallala Date: Mon Sep 4 13:46:13 2017 +0200 adding timeers for psatd src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit a31f3fa71259cab38ec134f42b818805ebc4a26f Author: haithem kallala Date: Mon Sep 4 13:41:44 2017 +0200 setting times for psatd src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 5fef96528176f13e43a5bca57ef24a8588b6464e Author: haithem kallala Date: Mon Sep 4 11:47:39 2017 +0200 adding comments comments about laser src/parallelization/tiling/tiling.F90 commit c7a4f02abd8ea2b3581153b9a2d571b68d94d579 Author: haithem kallala Date: Mon Sep 4 11:36:54 2017 +0200 changing field_r alloc to correspond exactly to what it should be src/parallelization/mpi/mpi_routines.F90 commit 2b374735a63600b862a9543baa3bc7c9592a59db Author: haithem kallala Date: Mon Sep 4 10:51:05 2017 +0200 fixing laser rho deposition(set to false) src/initialization/control_file.F90 src/modules/modules.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 783a4086d49f318e744e12ab5d733228ca495873 Author: haithem kallala Date: Mon Sep 4 10:30:23 2017 +0200 fixing different bugs src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/tiling/tiling.F90 commit cb86ac4482708caf32e49897d4919dc1ae513f0c Author: Remi Lehe Date: Sat Sep 2 10:31:49 2017 -0700 Implement user-suggested modifications to documentation Doxygen/pages/install_fortran.txt Doxygen/pages/install_python.txt Doxygen/pages/testing.txt Installation_doc/Fortran/INSTALL_FORTRAN_LINUX.md Installation_doc/Fortran/INSTALL_FORTRAN_MACOS.md Installation_doc/Python/INSTALL_PYTHON_LINUX.md Installation_doc/Python/INSTALL_PYTHON_MACOS.md README.md commit c80181d865e3ba258aed51084b21e01a7b08a789 Author: Remi Lehe Date: Sat Sep 2 10:26:06 2017 -0700 Change line endings from Windows-style to Linux-style Installation_doc/Fortran/INSTALL_FORTRAN_CORI1.md Installation_doc/Fortran/INSTALL_FORTRAN_CORI2.md Installation_doc/Fortran/INSTALL_FORTRAN_EDISON.md Installation_doc/Fortran/INSTALL_FORTRAN_LINUX.md Installation_doc/Fortran/INSTALL_FORTRAN_MACOS.md Installation_doc/Python/INSTALL_PYTHON_CORI.md Installation_doc/Python/INSTALL_PYTHON_EDISON.md Installation_doc/Python/INSTALL_PYTHON_LINUX.md Installation_doc/Python/INSTALL_PYTHON_MACOS.md Installation_doc/Python/INSTALL_PYTHON_MIRA.md commit 76b53c20c4fee2c15fef11e2ff0f19d138afb028 Merge: d15e6071 6e9e9046 Author: Maxence Thevenet Date: Thu Aug 31 17:41:28 2017 +0000 Merged in update_configure (pull request #119) Update configure commit 6e9e90462ee3daaa78f77d94992db8ec4482e83b Author: Remi Lehe Date: Thu Aug 31 10:10:44 2017 -0700 Use `argparse` for the configure script configure commit d15e6071513a38fe5af8553bf48cf2dbeb67b919 Merge: e1307c5c 2a57b775 Author: Remi Lehe Date: Thu Aug 31 00:25:36 2017 +0000 Merged in expand_docs (pull request #114) Add Theory section to the Doxygen PICSAR documentation commit d72de7bbc142ed6eb86f06015e794ff60c0499e7 Author: mthevenet Date: Wed Aug 30 16:25:36 2017 -0700 minor corrections configure commit a55d7c5469b31baa9c0b4af8ac48aeaa8ed401ac Author: mthevenet Date: Wed Aug 30 16:21:09 2017 -0700 correction after shippable tests failed configure commit 10b1532c5db0ade310c7ca7a56ba6f219ffc8e26 Author: mthevenet Date: Wed Aug 30 16:12:36 2017 -0700 minor correction configure commit 2f4807dc17f5b9d9f0104630f0814f67cfae7f0b Author: mthevenet Date: Wed Aug 30 15:50:33 2017 -0700 update commit to allow intel compiler and/or KNL architecture configure commit e1307c5c664c4e9d65a4cb768345d8249ebbc2ec Merge: 8fdff969 5a8d8c14 Author: Remi Lehe Date: Wed Aug 30 21:20:34 2017 +0000 Merged in cori_install (pull request #118) Generalize configure for Cori Approved-by: Maxence Thevenet commit 5a8d8c14d47384ac33ad4f1eb7cd1a07d4d22e40 Author: Remi Lehe Date: Wed Aug 30 13:28:39 2017 -0700 Generalize configure for Cori configure commit 2a57b775c61f6f9b6716a58cd8d871d53a8ee34b Merge: 4028b72c 29518458 Author: Remi Lehe Date: Tue Aug 29 15:30:14 2017 -0700 Merge branch 'expand_doc' of https://bitbucket.org/berkeleylab/picsar into expand_docs commit fb52dadd35e6f8331c4527c5797e5f3ef8250f75 Author: kallala Date: Fri Aug 25 18:47:31 2017 +0200 deleting commented lines src/parallelization/tiling/tiling.F90 commit 2c5725c6bf422c3165cb83073e8ac8c2108fbeec Author: kallala Date: Fri Aug 25 18:43:59 2017 +0200 fixing some bugs in laser -added a flag for charge depo (false for laser particules) -corrected indexes for deposition of laser particles src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/initialization/control_file.F90 src/modules/modules.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 9716385775466fcc79f04ceb6dbcf12591cc1e39 Author: kallala Date: Fri Aug 25 13:42:47 2017 +0200 quick fixing of laser it should work now src/parallelization/tiling/tiling.F90 commit dad8376bafdba4cfbd126816f186fbcad25e7873 Author: kallala Date: Fri Aug 25 11:53:52 2017 +0200 fixing a bug in laser init src/parallelization/tiling/tiling.F90 commit 29518458a97a7a6ced395eeec5a14db5d0fc6099 Merge: 46f4dbcb b5d52a18 Author: Jean-Luc Vay Date: Thu Aug 10 19:03:37 2017 +0000 Merged in jlvay/synchronized-content-with-front-page-on--1502385135828 (pull request #115) Synchronized content with front page on bitbucket. commit 4028b72cfe890e6d30b5cfb591a12e7e5e9a6888 Author: Remi Lehe Date: Thu Aug 10 10:39:42 2017 -0700 Removed intro section Doxygen/images/Plasma_acceleration_sim.png Doxygen/pages/latex_theory/theory.tex commit b5d52a1881729f0ae65ee72600a696ff1b6a8bc8 Author: Jean-Luc Vay Date: Thu Aug 10 17:12:26 2017 +0000 Synchronized content with front page on bitbucket. Doxygen/pages/mainpage.txt commit 75099366a3aa9981354c45c5e3f914247b01456b Author: Guillaume Blaclard Date: Mon Jul 10 13:29:42 2017 -0700 Correction typos src/diags/diags.F90 commit 46f4dbcbd20a9c4d42c16dfcd4480eff7480ed00 Author: Remi Lehe Date: Wed Aug 9 13:00:02 2017 -0700 Correct a few formatting errors Doxygen/pages/latex_theory/Maxwell_solvers/Maxwell_FDTD_solver.tex Doxygen/pages/latex_theory/Particle_pushers/Boris_pusher.tex Doxygen/pages/latex_theory/reformat.py commit 9b75aa20e740501a0afa3b6732c16d82c0550a89 Author: Remi Lehe Date: Wed Aug 9 10:03:06 2017 -0700 Remove \bm commands Doxygen/pages/latex_theory/Particle_pushers/Vay_pusher.tex Doxygen/pages/latex_theory/newcommands.tex Doxygen/pages/latex_theory/reformat.py Doxygen/pages/latex_theory/theory.tex commit 4ca55aca1fc98b813645daebbce93459498b9337 Author: Remi Lehe Date: Wed Aug 9 09:37:56 2017 -0700 Save the file allbibs.bib instead of WarpX.bib Doxygen/pages/latex_theory/Makefile Doxygen/pages/latex_theory/allbibs.bib Doxygen/pages/latex_theory/theory.tex commit ff22c54f39522fc1cd8d3f565a74b52e2c68a900 Author: Remi Lehe Date: Wed Aug 9 08:55:31 2017 -0700 Improved handling of figures in PICSAR doc Doxygen/images/PIC.png Doxygen/images/Plasma_acceleration_sim.png Doxygen/images/Yee_grid.png Doxygen/pages/latex_theory/Makefile Doxygen/pages/latex_theory/Maxwell_solvers/Maxwell_FDTD_solver.tex Doxygen/pages/latex_theory/reformat.py Doxygen/pages/latex_theory/theory.tex commit 00dae920c9f7ee33f7ab357e8afa438ca043412e Author: Remi Lehe Date: Wed Aug 9 08:33:46 2017 -0700 Remove unused parts of documentation Doxygen/pages/latex_theory/AMR/AMR.tex Doxygen/pages/latex_theory/PML/PML.log Doxygen/pages/latex_theory/PML/PML.tex commit 4cfc4f9078d758bed15cbca069bfd2591376e574 Author: Remi Lehe Date: Wed Aug 9 08:30:18 2017 -0700 Reorganized theoretical documentation Doxygen/Doxyfile Doxygen/Makefile Doxygen/latex_theory/allbibs.bib Doxygen/pages/latex_theory/AMR/AMR.tex Doxygen/pages/latex_theory/Cylindrical/Cylindrical.tex Doxygen/pages/latex_theory/Deposition/Current_deposition.tex Doxygen/pages/latex_theory/Gather/Field_gather.tex Doxygen/pages/latex_theory/Makefile Doxygen/pages/latex_theory/Maxwell_solvers/Maxwell_FDTD_solver.tex Doxygen/pages/latex_theory/Maxwell_solvers/Maxwell_NSFDTD_solver.tex Doxygen/pages/latex_theory/Maxwell_solvers/Maxwell_PSATD_solver.tex Doxygen/pages/latex_theory/PML/PML.log Doxygen/pages/latex_theory/PML/PML.tex Doxygen/pages/latex_theory/Particle_pushers/Boris_pusher.tex Doxygen/pages/latex_theory/Particle_pushers/Vay_pusher.tex Doxygen/pages/latex_theory/WarpX.bib Doxygen/pages/latex_theory/newcommands.tex Doxygen/pages/latex_theory/reformat.py Doxygen/pages/latex_theory/theory.tex commit b6370d758c1b531b0f868436af68619cf1199e0a Author: Remi Lehe Date: Mon Aug 7 08:58:17 2017 -0700 Commented out axi-symmetrical algorithm. Doxygen/latex_theory/theory.tex commit 0b93178ec2a68194985aafa55ebebcfd9753fea3 Author: Remi Lehe Date: Mon Aug 7 08:56:22 2017 -0700 Separate cylindrical algorithm into a different file Doxygen/latex_theory/Cylindrical/Cylindrical.tex Doxygen/latex_theory/theory.tex commit 602a51de0227a2dd56444af7dcdcc973413b88b5 Author: Remi Lehe Date: Thu Aug 3 07:53:03 2017 -0700 Removed theory part which is now in WarpX Doxygen/latex_theory/theory.tex commit cd81fcf4dac757153de1b988ee389446a040ac07 Author: Remi Lehe Date: Wed Aug 2 10:21:35 2017 -0700 Additional corrections Doxygen/latex_theory/reformat.py Doxygen/latex_theory/theory.tex commit ce730629b1e0368fa09adfbb70dd0a9831323d1e Author: Remi Lehe Date: Wed Aug 2 09:36:27 2017 -0700 Additional fixes to documentation Doxygen/latex_theory/Deposition/Current_deposition.tex Doxygen/latex_theory/theory.tex commit 8ad2279c9fb0f8fc228b4a5c6f63fb09f1c6a8b2 Author: Remi Lehe Date: Tue Aug 1 17:30:05 2017 -0700 Additional fix Doxygen/latex_theory/reformat.py commit f9606f4e7e77923fc07a62fcc65f1b072d2794e6 Author: Remi Lehe Date: Tue Aug 1 17:01:10 2017 -0700 Updated Makefiles Doxygen/Makefile Doxygen/README.md Doxygen/latex_theory/Makefile commit 9944639c137cc400f22bf4e23d52a812068ee5d1 Author: Remi Lehe Date: Tue Aug 1 16:52:43 2017 -0700 Add LateX sources for theory Doxygen/Doxyfile Doxygen/latex_theory/AMR/AMR.tex Doxygen/latex_theory/Deposition/Current_deposition.tex Doxygen/latex_theory/Gather/Field_gather.tex Doxygen/latex_theory/Makefile Doxygen/latex_theory/Maxwell_solvers/Maxwell_FDTD_solver.tex Doxygen/latex_theory/Maxwell_solvers/Maxwell_NSFDTD_solver.tex Doxygen/latex_theory/Maxwell_solvers/Maxwell_PSATD_solver.tex Doxygen/latex_theory/PML/PML.log Doxygen/latex_theory/PML/PML.tex Doxygen/latex_theory/Particle_pushers/Boris_pusher.tex Doxygen/latex_theory/Particle_pushers/Vay_pusher.tex Doxygen/latex_theory/WarpX.bib Doxygen/latex_theory/allbibs.bib Doxygen/latex_theory/newcommands.tex Doxygen/latex_theory/reformat.py Doxygen/latex_theory/theory.tex commit 0874516bb414bddaa7b515a0d112f93bdf7a642e Author: Remi Lehe Date: Tue Aug 1 15:30:12 2017 -0700 Clean documentation and add README Doxygen/README.md Doxygen/mainpage.txt commit 6f12cf5c29f1c09f80ff5fccd1661736d7a7023f Author: Guillaume Blaclard Date: Mon Jul 10 13:25:45 2017 -0700 Modifications to include the comments suggested by H.V. src/diags/diags.F90 commit 6118c26b5578e5b4edbfff9c8960b07092c01d7f Author: Guillaume Blaclard Date: Mon Jul 10 11:51:56 2017 -0700 Add the old momentum variable as particle_properties src/modules/modules.F90 commit 8fdff9691cb66bcb31625f0b4c324e4e1ce9bc04 Merge: c01fe6c5 1591b470 Author: Remi Lehe Date: Mon Jun 26 07:57:31 2017 +0000 Merged in correct_indentation (pull request #110) Correct indentation parser for compiler directives Approved-by: Henri VINCENTI commit 4168aa2d14e8228f2269db555e7d6da5006354a3 Author: Guillaume Blaclard Date: Fri Jun 23 15:16:50 2017 -0700 Add new routines for plane particle diags src/diags/diags.F90 commit 860a19db671709687eaf46f570998d1c79c1babd Author: Guillaume Blaclard Date: Fri Jun 23 15:09:06 2017 -0700 Modify the index of arrays to match with the size of the particle arrays src/diags/diags.F90 commit 2590afe5e00625cde5df6ceab6462a5038d049b2 Author: Guillaume Blaclard Date: Fri Jun 23 15:07:48 2017 -0700 Add getquantity field src/diags/diags.F90 commit d11b3497c5a07476ff54cd233ae83cc8c41a1ae5 Merge: a28310d0 c01fe6c5 Author: Guillaume Blaclard Date: Fri Jun 23 15:07:09 2017 -0700 Merge branch 'master' into get_quantity_pxr commit 722eccfa48786bb45ea1dd136f6e356fc406bace Author: Remi Lehe Date: Fri Jun 23 09:46:59 2017 -0700 Implemented 3rd order vectorized deposition src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 0076dacbe428e36d453001edf256c920c079d872 Author: Remi Lehe Date: Fri Jun 23 09:18:15 2017 -0700 New API in tests and current deposition manager Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit c01fe6c59c7f00ec7b76eac8cfce47844387c3f5 Author: Remi Lehe Date: Fri Jun 23 11:36:53 2017 -0700 Revert "New API in tests and current deposition manager" This reverts commit 8af2a7138e1569f87a983f08953192c3d04fffc8. Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit cbb34e49cb2fe9f6c8a9920926d322e15d7690f6 Author: Remi Lehe Date: Fri Jun 23 11:32:43 2017 -0700 Revert "Implemented 3rd order vectorized deposition" This reverts commit 7fa0c636f74e3640d6d861e896293f34a76eb636. src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 7fa0c636f74e3640d6d861e896293f34a76eb636 Author: Remi Lehe Date: Fri Jun 23 09:46:59 2017 -0700 Implemented 3rd order vectorized deposition src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 8af2a7138e1569f87a983f08953192c3d04fffc8 Author: Remi Lehe Date: Fri Jun 23 09:18:15 2017 -0700 New API in tests and current deposition manager Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 7dd7de9a26fde383106b33235cca60882c2a47aa Author: Remi Lehe Date: Fri Jun 23 09:07:26 2017 -0700 Corrected bounds src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 894ee0682ec4faa4f8bb8f095c6fcb6ac7006539 Author: Remi Lehe Date: Fri Jun 23 07:59:13 2017 -0700 Corrected bounds of loops src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 2fcd8f889dbd5d61283ce9d2984311f9763d43b8 Author: Remi Lehe Date: Thu Jun 22 22:05:33 2017 -0700 Use more correct bounds, for the current deposition src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit aa4401f5ed399df22a36e20d05f7368744ef5cb8 Author: Remi Lehe Date: Thu Jun 22 21:55:34 2017 -0700 Avoid out-of-bound for the current deposition src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit b8ba65afdeab58877fa4f346f4acd605b119caf7 Author: Remi Lehe Date: Thu Jun 22 17:25:57 2017 -0700 Modify automated tests Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 commit 1591b4700ae906c0fe261be2fe83c8beb956dc19 Author: Remi Lehe Date: Thu Jun 22 16:37:50 2017 -0700 Correct indentation parser src/housekeeping/load_balancing.F90 utils/fortran_parsers/indent_file.py commit e6bb05357f86bd130a4609ebbad9fbdb12836ba4 Author: Remi Lehe Date: Thu Jun 22 16:33:26 2017 -0700 Corrected current deposition function src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 3485d996019b6c2c6c7e42374dcff912871460b1 Author: Remi Lehe Date: Thu Jun 22 16:21:44 2017 -0700 Finished implementation of order 2 vectorized deposition src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit d0574e7be7be1462e20a2b98769a6bc2bbd5da01 Author: Remi Lehe Date: Thu Jun 22 16:00:59 2017 -0700 Reindented file src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit f306c407f84df8eda16c62965abfc17c45252b4c Author: Remi Lehe Date: Thu Jun 22 15:56:37 2017 -0700 Started rewritting order 2 vectorized deposition src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit f391faafd7b01cd6761f679698d2b41a447c31a0 Author: Remi Lehe Date: Thu Jun 22 14:02:00 2017 -0700 Modify permission on the files main.F90 and submain.F90 src/main.F90 src/submain.F90 commit 18879db4b6f8ef9af26d51f871b802e579883c68 Merge: 0638147f a29fb69d Author: Remi Lehe Date: Wed Jun 21 22:47:15 2017 +0000 Merged in white_spaces (pull request #109) Remove empty lines and trailing spaces, using the indentation script Approved-by: Henri VINCENTI commit a29fb69de312335b19c9ba6b32636942fe843697 Author: Remi Lehe Date: Mon Jun 19 10:20:39 2017 -0700 Execute script on all files src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/karkainnen_solver/karkainnen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/housekeeping/load_balancing.F90 src/housekeeping/sorting.F90 src/initialization/control_file.F90 src/ios/simple_io.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_derived_types.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 src/submain.F90 commit 4281e47be2ced05c775b2e0171f28a8895f68137 Author: Remi Lehe Date: Mon Jun 19 10:17:40 2017 -0700 Indentation script now removes trailing spaces and empty lines utils/fortran_parsers/indent_file.py commit a28310d044a0f608d04f085d004364fc7f9d2112 Merge: 278e431e 0638147f Author: Guillaume Blaclard Date: Thu Jun 15 15:25:51 2017 -0700 Merge https://bitbucket.org/berkeleylab/picsar into get_quantity_pxr (Thank you H. Vincenti) commit 0638147f8a0c8b38801ccbcd4048e209d4d3a34d Merge: c124e37b 52d19eac Author: Henri VINCENTI Date: Thu Jun 15 17:11:46 2017 +0000 Merged in pxr_cleaning_2 (pull request #107) PARSER FOR FORTRAN 90 CODE JUSTIFICATION Approved-by: Remi Lehe Approved-by: Henri VINCENTI commit 278e431e89fae1723899d8959c2c861403072124 Author: Guillaume Blaclard Date: Wed Jun 14 18:12:08 2017 -0700 Remove useless routine src/diags/diags.F90 commit 52d19eac5cf3313f549a69d59ed7969277ecdab3 Author: Henri VINCENTI Date: Wed Jun 14 18:09:52 2017 -0700 Modified label comments of all subroutines Removed useless commented lines src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/karkainnen_solver/karkainnen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/warpx_yee.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/housekeeping/load_balancing.F90 src/housekeeping/sorting.F90 src/initialization/control_file.F90 src/ios/simple_io.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_derived_types.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 commit 4820f79cdb58e5aa9e954d875aa6f34c35420307 Author: Guillaume Blaclard Date: Wed Jun 14 17:52:31 2017 -0700 Add getquantity and getquantity_pid routines to replace the python WARP routines src/diags/diags.F90 commit 188507dbb275365202f8b17b9a37ae6c2bc6fbc3 Author: Henri VINCENTI Date: Wed Jun 14 14:22:46 2017 -0700 Corrected documentation CONTRIBUTING.md utils/fortran_parsers/justify_file.py commit 600dca0f9665f1a5d7906f00617aaf61e3a9f7c7 Author: Henri VINCENTI Date: Wed Jun 14 14:11:47 2017 -0700 Corrected justification of all files src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/karkainnen_solver/karkainnen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/housekeeping/load_balancing.F90 src/housekeeping/sorting.F90 src/initialization/control_file.F90 src/ios/simple_io.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_derived_types.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 src/submain.F90 utils/fortran_parsers/justify_file.py commit 908b8d12d6be172025528a8cdf4e8ac001353fe0 Author: Henri VINCENTI Date: Wed Jun 14 13:58:07 2017 -0700 Added support for preprocessor directives in justification parser utils/fortran_parsers/justify_file.py commit 7b8e2208180028fe21fa7f490de67eb4f5ea1698 Author: Henri VINCENTI Date: Wed Jun 14 13:48:01 2017 -0700 corrected indentation level utils/fortran_parsers/justify_file.py commit 0f27cd717ca61f600de5855ec1b3c6ef136fabea Author: Henri VINCENTI Date: Wed Jun 14 13:46:09 2017 -0700 Improved documentation of justification parser utils/fortran_parsers/justify_file.py commit 25553aa5ea113f9ee45271c889c9789e263ec443 Author: Henri VINCENTI Date: Tue Jun 13 17:15:09 2017 -0700 Added modified parser utils/fortran_parsers/justify_file.py commit c58f753a5842373ea1338e7b0773299e0328009a Author: Henri VINCENTI Date: Tue Jun 13 15:50:06 2017 -0700 Added file for automatically justifying all fortran source files utils/fortran_parsers/indent_file.py commit c124e37b8c01c3e970dfe3e30643703865206b5d Merge: 9a24022e b5ae34f2 Author: Maxence Thevenet Date: Tue Jun 13 16:26:44 2017 +0000 Merged in update_vtune_path (pull request #106) Makefile update so that PICSAR runs with VTune on Cori phase 1 Approved-by: Henri VINCENTI commit b5ae34f2c38a33a7238e4b9b5297aa9d0810dac7 Author: mthevenet Date: Mon Jun 12 13:35:08 2017 -0700 further changes in the Makefile so that PICSAR can run with vtune on Cori phase 1. Paths to VTune modules are now up to date. Makefile commit 9a24022ea2c7feab079b1e5d55fed9173a11c79a Merge: 3649c03e 8c8e9966 Author: Henri VINCENTI Date: Fri Jun 9 07:15:59 2017 +0000 Merged in pxr_cleaning (pull request #104) FIX MAJOR ISSUES IN MPI FIELD EXCHANGES commit 8c8e9966c2cd073353cd64d0e71b3363ef04aed8 Author: Henri VINCENTI Date: Thu Jun 8 19:01:23 2017 -0700 Many corrections: - Corrected bug in control_file.F90 in antenna section block reading (end was noot detected properly causing subsequent blocks to be discarded) - Improved comments in tiling.F90, - Corrected major bugs in MPI exchanges. The central point for the nodal grid was nto exchanged causing troubles withe the B field. The non blokcing routines were also buggy due to absence of MPI_WAITALL before sending and receiving at same bufffer location src/boundary_conditions/field_boundaries.F90 src/initialization/control_file.F90 src/ios/simple_io.F90 src/parallelization/tiling/tiling.F90 src/submain.F90 commit 3649c03e42e2dd107fedb73f9798a23e967664b2 Merge: b1ab6b82 5cb52bc4 Author: Maxence Thevenet Date: Thu Jun 8 22:09:24 2017 +0000 Merged in fix_makefile_vtune (pull request #103) New Tune version on Cori Approved-by: Henri VINCENTI commit 5cb52bc484358722f7b0641b19046859bec5165e Author: mthevenet Date: Thu Jun 8 14:13:57 2017 -0700 Fixes link the VTune API. The path is defined in variable VTUNEDIR Makefile commit a240e343bc3fe186e79d68471033b1c26529d7ea Author: mthevenet Date: Thu Jun 8 11:06:04 2017 -0700 The version of VTune was updated on Cori. Adapt the makefile to this change. Makefile commit a82debf771575677dbe5caba93ad3cd7fc36b77f Author: Henri VINCENTI Date: Wed Jun 7 16:35:14 2017 -0700 Corrected forthon parser to include name change utils/forthon_parser/forthon_parser.py commit f0d008a0c1bb69948f625366f2f1af7503b2ec30 Author: Henri VINCENTI Date: Wed Jun 7 16:30:15 2017 -0700 Corrected name of folder. Made corrections of folder name in Makefile Makefile src/initialization/control_file.F90 commit b1ab6b82f04ebe140c17ced8656ccbc07063faaa Merge: 8a0ddc99 faa35f5b Author: Henri VINCENTI Date: Wed Jun 7 23:22:49 2017 +0000 Merged in laser_routines_v2 (pull request #102) Laser routines v2 - Follow up on PR #98 by H. Khallala commit faa35f5b9ef8773a17c5bb2b2573dcbb542492f9 Author: Haithem Kallala Date: Wed Jun 7 15:38:14 2017 +0200 Small correction in control_filey src/initilization/control_file.F90 commit 8c3e1e313cab1269d4b781c9582205826bc7d677 Author: Henri VINCENTI Date: Tue Jun 6 15:12:22 2017 -0700 Corrected indentatin using parser src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 46ca74dbb8b062f697ff1382bb80c19ca0f489c1 Author: Henri VINCENTI Date: Tue Jun 6 15:03:01 2017 -0700 Added comment in input file examples/example_decks_fortran/laser.pixr commit c23363520352c32b9f5528b7ce321f9a6f779e3d Author: Henri VINCENTI Date: Tue Jun 6 15:00:57 2017 -0700 Added polangle variable to define arbitrary laser polarization Added default init for antenna parameters src/initilization/control_file.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit ea123207a2d8b87970a10afd1aa3814c73b00c21 Author: Henri VINCENTI Date: Tue Jun 6 14:38:49 2017 -0700 Corrected errors in laser pusher managers Corrected laser weight init with proper constants Corrected laser type (*0) Corrected input file to have a realistic case where laser wavelength is solved examples/example_decks_fortran/laser.pixr src/initilization/control_file.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 5bc4cbe81d21a168a1931630e94c8878fb947117 Author: Henri VINCENTI Date: Tue Jun 6 13:46:17 2017 -0700 Corrected typo END SUBROUTINE src/parallelization/tiling/tiling.F90 commit 8a0ddc9982b7b03368eca3fcd1a687a0ff1720d1 Author: Jean-Luc Vay Date: Tue Jun 6 20:19:58 2017 +0000 README.md edited online with Bitbucket README.md commit 3055c4b823c96b954cd698c9b7b12b9bc15ee441 Author: Jean-Luc Vay Date: Tue Jun 6 20:19:11 2017 +0000 README.md edited online with Bitbucket README.md commit 6f627ed3c6889b1618bfe70a9bf90560583b2cd5 Author: Jean-Luc Vay Date: Tue Jun 6 20:17:39 2017 +0000 README.md edited online with Bitbucket README.md commit 43870c6711cea1b10c545b4937319b411728200c Author: Jean-Luc Vay Date: Tue Jun 6 18:55:32 2017 +0000 README.md edited online with Bitbucket README.md commit b078f192ed88e7f8b4f2d389462f4ee82655e43d Author: Jean-Luc Vay Date: Tue Jun 6 18:33:22 2017 +0000 README.md edited online with Bitbucket README.md commit e7b55c450e8ba7f8e0d8a8d598a668d208823216 Author: Jean-Luc Vay Date: Tue Jun 6 18:15:50 2017 +0000 README.md edited online with Bitbucket README.md commit e7a08064feab99b73e369b8958dff5f8093a5175 Author: haithem kallala Date: Tue Jun 6 20:05:25 2017 +0200 added lens for focus (need to test) src/initilization/control_file.F90 src/parallelization/tiling/tiling.F90 commit f663b4271998e65dfc08108ee6be624478dce71a Author: Jean-Luc Vay Date: Tue Jun 6 17:52:58 2017 +0000 README.md edited online with Bitbucket README.md commit e45b84d26763422caec25887d32479b478194e45 Author: haithem kallala Date: Tue Jun 6 19:42:28 2017 +0200 fixing laser antenna weight needs to be sclaed to mesh size src/initilization/control_file.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 3e44478a62142b428d9c8ae791207ccbca86380a Author: haithem kallala Date: Tue Jun 6 13:56:28 2017 +0200 fixing a bug in src/particle_pushers/laser_pusher_manager_3d.F90 src/initilization/control_file.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 0146ea1ab11b594c7a1a48eb5b7e10f568bedf38 Author: Henri VINCENTI Date: Mon Jun 5 17:20:42 2017 -0700 Several corrections on laser definition and push src/initilization/control_file.F90 src/modules/modules.F90 src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit 95bed5c88cc30774c8edcb3b1dfe0e00f3a6dc75 Author: Henri VINCENTI Date: Mon Jun 5 09:54:44 2017 -0700 Set npid to 3 for laser particles src/modules/modules.F90 commit a678971da0effeab1f53bbe7e28e3859ded26f32 Author: Henri VINCENTI Date: Mon Jun 5 09:09:31 2017 -0700 Added laser injection in submain.F90 src/submain.F90 commit ba17e84bfa49d0eec189580618d9ac4127e0e85f Author: Henri VINCENTI Date: Sat Jun 3 18:52:10 2017 -0700 Last modifs on laser Makefile src/parallelization/tiling/tiling.F90 src/particle_pushers/laser_pusher_manager_3d.F90 src/submain.F90 utils/forthon_parser/forthon_parser.py commit cc414af49450e5abfebf935b751461dec6d34c2a Author: Henri VINCENTI Date: Fri Jun 2 16:11:49 2017 -0700 Added test on particle species to check if antenna. If antenna, regular field gathering+ particle pusher is not done. Particle pusher for particle antenna is implemented in laser_pusher_manager_3d.F90 instead src/particle_pushers/particle_pusher_manager_3d.F90 commit 52d521001114002e84d3368f500d2f794e39d50f Author: Henri VINCENTI Date: Fri Jun 2 16:08:30 2017 -0700 Added input file laser.pixr created by H. Khallala examples/example_decks_fortran/laser.pixr commit 82e1bb1b2b19e2b46cca1050d66f8273b2d96176 Author: Henri VINCENTI Date: Fri Jun 2 16:03:41 2017 -0700 Corrected errors in type definition and module definition for antenna src/initilization/control_file.F90 src/modules/modules.F90 commit fcc43108a403f94805c34dfd74ce5d5cd069034b Author: Henri VINCENTI Date: Fri Jun 2 15:53:43 2017 -0700 Added init of antenna section in control.F90 originally edited by H. Khallala. Added definition of antenna per species basis Added Antenna attribute to the species class src/initilization/control_file.F90 src/modules/modules.F90 commit 65173717e7206db1169a607fa3d6f3f57f6705a9 Author: Henri VINCENTI Date: Fri Jun 2 15:38:34 2017 -0700 Modified indentation parser to include file laser_pusher_manager_3D.F90 Corrected indentation in laser_pusher_manager_3D.F90 src/particle_pushers/laser_pusher_manager_3d.F90 utils/fortran_parsers/indent_file.py commit 9be8e26ff43eef65ff603422cfc89507a11ad865 Author: Henri VINCENTI Date: Fri Jun 2 15:34:55 2017 -0700 Created new laser branch to avoid numerous conflicts in former branch In this commmit: - Added flag is_antenna to species properties - Added file laser_pusher_manager_3D.F90 originally created by H. Khallala src/modules/modules.F90 src/particle_pushers/laser_pusher_manager_3d.F90 commit f1dae27daebc0eb796f6d177ab8579a44a79f7e3 Merge: 213044da 646dea25 Author: Henri VINCENTI Date: Fri Jun 2 22:22:09 2017 +0000 Merged in fix_indent_parser (pull request #101) Improving indentation parser and correcting indentation errors on some files Approved-by: Henri VINCENTI commit 646dea25219230d02472bdc0922b8e33712713df Author: Henri VINCENTI Date: Fri Jun 2 14:49:29 2017 -0700 Improved the indentation parser. Now the parser does not consider lines with variable names starting by end and that were previously matched to identify end blocks. Parser corrected errors on files where this possibility happened. src/initilization/control_file.F90 src/parallelization/mpi/mpi_routines.F90 utils/fortran_parsers/indent_file.py commit 213044da74b0c9adf1dff7532b38e56a47357b4e Merge: 0cf9d7ac 4dd3ee20 Author: Henri VINCENTI Date: Fri Jun 2 03:02:19 2017 +0000 Merged in pxr_correct_indentation (pull request #100) Correct indentation in PXR commit 4dd3ee20068746bf36385f4e7c2311d4dbb935fa Author: Henri VINCENTI Date: Thu Jun 1 17:28:11 2017 -0700 Added doc in parser and file CONTRIBUTING.md CONTRIBUTING.md utils/fortran_parsers/indent_file.py commit fdb6dcbd79301e86db765dc4ee176154d756c6ab Author: Henri VINCENTI Date: Thu Jun 1 17:09:33 2017 -0700 Modified parser to automatically indent all files and be case insensitive src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/karkainnen_solver/karkainnen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/housekeeping/load_balancing.F90 src/housekeeping/sorting.F90 src/initilization/control_file.F90 src/ios/simple_io.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 src/submain.F90 utils/fortran_parsers/indent_file.py commit 7b1a77c33c9e16364e4aa44c8f061c9e0c74c8e8 Author: Henri VINCENTI Date: Thu Jun 1 16:47:00 2017 -0700 corrected indentation src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 604ff330b59fa365fbb62f0e5cc5fdd22152e060 Author: Henri VINCENTI Date: Thu Jun 1 16:44:48 2017 -0700 corrected indentation src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 3f1e68d807d3b59d680a49a86f5a2245da0ce950 Author: Henri VINCENTI Date: Thu Jun 1 16:43:00 2017 -0700 Corrected indentation of file currend_deposition_manager2D.F90 using indentation parser src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit a683b4a1c0deb9b355ab16e91d2d1fe5344e51c0 Author: Henri VINCENTI Date: Thu Jun 1 16:40:30 2017 -0700 Corrected indentation of tiling.F90 using indentation parser src/parallelization/tiling/tiling.F90 commit f6bd658fcf24e9edbcf6200f43d4a5e7a3971e26 Author: Henri VINCENTI Date: Thu Jun 1 16:38:08 2017 -0700 Corrected indentation using indentation parser of mpi_derived_types.F90 src/parallelization/mpi/mpi_derived_types.F90 commit a0d89d1030d1af017dd4611ee1a8183c4ab50148 Author: Henri VINCENTI Date: Thu Jun 1 16:36:32 2017 -0700 Corrected indentation using indentation parser of mpi_routines.F90 src/parallelization/mpi/mpi_routines.F90 commit 8f893ff92dfc044b138868e22e63ba3e51dcbfb6 Author: Henri VINCENTI Date: Thu Jun 1 16:33:05 2017 -0700 Udpated modules.F90 using indentation parser src/modules/modules.F90 commit ea29d3bb1968b96a64d038658a180aff58e0e14b Author: Henri VINCENTI Date: Thu Jun 1 16:26:00 2017 -0700 Created new parsing file to correct indentation utils/fortran_parsers/indent_file.py commit 0cf9d7ac3244c8a63bced1c6bfac1322fbb95590 Merge: 6e8f9b1e f349471a Author: Henri VINCENTI Date: Thu May 25 13:21:52 2017 +0000 Merged in pxr_correct_currdepo_tests (pull request #99) CORRECTED BUGGY ACCEPTANCE TESTINGS ON CURRENT DEP Approved-by: Henri VINCENTI commit 6e8f9b1e1b33fb65307c3cdc1de32153748653f2 Merge: b4de115e f425b4f3 Author: Remi Lehe Date: Thu May 25 13:21:13 2017 +0000 Merged in check_compilation (pull request #97) Test compilation with FFTW in automated tests Approved-by: Henri VINCENTI commit f349471adfc7c5f7e1c8c3565628e9ddfe352d60 Author: Henri VINCENTI Date: Wed May 24 10:49:16 2017 +0200 Corrected order 2 and 3 Esirkepov acceptance testing Acceptance_testing/Gcov_tests/esirkepov_3d_test.F90 commit fd1341b0e018508c0aadeae1bee6bcc4e71ecd8d Author: Henri VINCENTI Date: Wed May 24 10:41:13 2017 +0200 Corrected test for vectorized Esirekpov. Removed useless arguments nox,noy,noz in depose_jxjyjz_esirkepov_vecHV_1_1_1 Acceptance_testing/Gcov_tests/esirkepov_3d_test.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit 2e0d578d64fe4084eb00a1c4c2523299321ea390 Author: Henri VINCENTI Date: Wed May 24 10:35:52 2017 +0200 Modified order 1 current deposition routines for Acceptance testing (wrong arguments that did not take into account last changes by Remi Lehe on current deposition routines to fit WARPX). Acceptance_testing/Gcov_tests/esirkepov_3d_test.F90 commit b4de115e1ee4beed798f3fecbbf9a50f825ecf16 Merge: acfee814 3f67bdde Author: Maxence Thevenet Date: Fri May 19 03:24:47 2017 +0000 Merged in minor_type_corrections (pull request #96) Minor type corrections commit acfee814d6e1c926d4240cca5dffc3f7be309165 Author: Remi Lehe Date: Thu May 18 19:58:29 2017 -0700 Remove trailing white spaces src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit f425b4f3552e6f28bd5ae1d4b44e9f292f4d9086 Author: Remi Lehe Date: Thu May 18 17:19:25 2017 -0700 Correct inconsistent variable name src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 00f9e0dc03d10a2c02019865c732056899c992c5 Author: Remi Lehe Date: Thu May 18 17:09:28 2017 -0700 Add FFTW3 in install shippable.yml commit 7a7b522107cba4bb5ce813b48ceeda066be12037 Author: Remi Lehe Date: Thu May 18 13:59:42 2017 -0700 Add installation of the MPI-FFTW library shippable.yml commit 3f67bdde5fd241baf8746857d6c40d891672e9fc Author: Maxence Thevenet Date: Thu May 18 15:13:17 2017 -0700 fixes src/modules/modules.F90 commit 1e1447c7d5db073bec14dbd99bbc564b89a56ebd Author: Maxence Thevenet Date: Thu May 18 14:30:08 2017 -0700 changes in some type declarations src/modules/modules.F90 commit 5fcd2feb007f0ae5f153d08d0b7cf3a16cfc6edc Author: Remi Lehe Date: Fri May 12 14:55:03 2017 -0700 Update shippable file shippable.yml commit 8e872149b26f5ae479620254823b2ecbec02d032 Author: Remi Lehe Date: Fri May 12 14:00:48 2017 -0700 Add compilation of Picsar with FFTW on shippable Makefile shippable.yml commit 711557100bebfd5639762e95629e8f67d24a0d85 Merge: 6d2b79be 89a77332 Author: Henri VINCENTI Date: Tue May 16 16:06:11 2017 +0000 Merged in pxr_psatd_with_updated_tests (pull request #91) **PXR with spectral PSAOTD solver** commit 6d2b79beb940c877b80a4d9c3c9c2acbcca46265 Merge: a18eba8a 03d6608a Author: Henri VINCENTI Date: Tue May 16 15:42:51 2017 +0000 Merged in pxr_modifs_intel (pull request #93) Corrected bugs pointed by Fred Hawes from Intel Inc. This includes: Approved-by: Remi Lehe Approved-by: Henri VINCENTI commit 89a7733211df7545908d8364808754b84ad1b925 Author: Henri VINCENTI Date: Tue May 16 17:23:53 2017 +0200 Changed comments + corrected some init src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit 03d6608a54e2e376ca93681450cc9d27deec761f Author: Henri VINCENTI Date: Tue May 16 16:54:11 2017 +0200 Added comments to the code src/boundary_conditions/particle_boundaries.F90 commit 212c4901b49094cedf4d6677b08df110cea03087 Author: Henri VINCENTI Date: Tue May 16 16:48:57 2017 +0200 Included changed pointed out by R. Lehe src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 7595f7c038a121ae5ce310f80d8b618ccabc3238 Author: Henri VINCENTI Date: Tue May 16 11:51:59 2017 +0200 Corrected bugs pointed by Fred Hawes from Intel Inc. This includes: - Change of suffix for some real variables declaration to _num to avoid precision loss at runtime - Adding CYCLE statement in particle_bcs_tiles_and_mpi_3d when removing particles that might create runtime errors in particle exchange, - Removing INTEL directives alignement on parameters causing compile time errors src/boundary_conditions/particle_boundaries.F90 src/modules/modules.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit a18eba8aec3c77b44f073af62c489cc541c74ded Author: Henri VINCENTI Date: Thu May 4 17:28:34 2017 +0000 README.md edited online with Bitbucket README.md commit 8ae6620966a707f67daa64acef26fddceae39e03 Author: Henri VINCENTI Date: Thu May 4 11:35:11 2017 +0200 Removed subroutine set_unit_pulse that was used previously for testing src/submain.F90 commit ab0d25b3efb40be9a2e0256d7de990d979cad441 Author: Henri VINCENTI Date: Wed May 3 06:40:09 2017 +0200 Modified pre-compiler directives to allow Forthon compiling src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 6ba2a913bf0fdb6324064777ae2c8f0c5b1d1452 Merge: 8890e6e4 cf01ed8f Author: Henri VINCENTI Date: Wed May 3 06:18:54 2017 +0200 Merge branch 'pxr_psatd_gb' into pxr_psatd_with_updated_tests commit cf01ed8fc0d6572806ec8f3500efb9437b11d712 Author: Henri VINCENTI Date: Wed May 3 05:52:07 2017 +0200 updated doc in Makefile Makefile commit 1e2e19c5357cf113b541dcfc0d2e3151a1b8fe1b Merge: 29ddb6ff 29a980c6 Author: Henri VINCENTI Date: Tue May 2 13:59:12 2017 +0200 Merge branch 'pxr_psatd_openmp_cori' into pxr_psatd_gb Conflicts: src/diags/diags.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 8890e6e47e1bc36a73b5f47dc29996d74c5542bb Merge: 5772553c 0a07fe21 Author: Henri VINCENTI Date: Tue May 2 13:49:19 2017 +0200 Merged correct_boundary_particles into master commit 0a07fe218e5318afbcc5bb54e1499ed0b727067d Author: Henri VINCENTI Date: Tue May 2 07:11:55 2017 +0200 Corrected error in particle_bcs_tiles_and_mpi_3d with indices ix,iy,iz in test for outbound particles test should be with xbd ybd zbd src/boundary_conditions/particle_boundaries.F90 commit 5772553c97c400a8d38890272527144f6412afde Author: Jean-Luc Vay Date: Mon May 1 11:10:50 2017 -0700 Couple of fixes on ncells declaration.. src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit f9da535c5e46b7aa783ed10b97d2b0a6856c9cb0 Merge: feed3138 b6d940ae Author: Remi Lehe Date: Mon Apr 24 16:11:12 2017 +0000 Merged in python_package (pull request #88) Reorganize the Python wrapper Approved-by: Jean-Luc Vay commit b6d940ae8dca08bb6098e6a6a4bceb66fff10518 Author: Remi Lehe Date: Fri Apr 21 19:52:08 2017 -0700 Change path to em3dsolver.py examples/example_scripts_python/HHG_ROM.py examples/example_scripts_python/HHG_ROM_CORI.py examples/example_scripts_python/homogeneous_plasma.py examples/example_scripts_python/ion_acceleration_2d.py examples/example_scripts_python/test_Langmuir_wave_3d.py examples/example_scripts_python/test_drifted_plasmas_3d.py examples/example_scripts_python/test_laser.py examples/example_scripts_python/test_load_balancing.py commit b631a50b5289296d78e8e7c476b58158451dab51 Author: Remi Lehe Date: Fri Apr 21 18:15:36 2017 -0700 Correct automated tests shippable.yml commit 7b468618d9ea29fe0bf048b9cab90ebdf1c4f822 Author: Remi Lehe Date: Fri Apr 21 17:17:07 2017 -0700 Change import path for python packages Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py Acceptance_testing/Python_tests/test_drifted_plasmas/test_drifted_plasmas.py commit f24204d04742c6b548d41a8800d4b8d83215a5e6 Author: Remi Lehe Date: Fri Apr 21 17:13:02 2017 -0700 Added MANIFEST.in Acceptance_testing/Python_tests/test/test.py python_module/MANIFEST.in python_module/setup.py commit 8cd8ad48678f0db2cb4207876b53050f2b38a23a Author: Remi Lehe Date: Fri Apr 21 16:58:19 2017 -0700 Change installation procedure Makefile_Forthon.in shippable.yml commit 90112125e60e792f1902cc2e0983a3bdfc0d47b6 Author: Remi Lehe Date: Fri Apr 21 16:41:36 2017 -0700 Suppress the Python files in PICSAR These files have been moved to Warp python_libs/GPSTDPXR.py python_libs/LPA_PXR.py python_libs/em3dsolverPXR.py python_module/picsar_python/__init__.py python_module/setup.py commit d7ddb8a8fd97e16319153ee19607f333844f1cc6 Author: Remi Lehe Date: Fri Apr 21 16:15:27 2017 -0700 Correct setup.py so as to allow picsar to be installed setup.py commit b7e1933d846493411022e890076f323a91282f7c Author: Remi Lehe Date: Fri Apr 21 10:55:44 2017 -0700 Started implementing Python module Makefile_Forthon.in examples/example_scripts_python/test.py examples/example_scripts_python/testwwarp.py picsar_python/__init__.py python_libs/GPSTDPXR.py python_libs/LPA_PXR.py python_libs/em3dsolverPXR.py setup.py commit feed3138863bb104fe2ea742c595aaf78d2d59b1 Merge: 881ea122 18ec47a9 Author: Remi Lehe Date: Thu Apr 20 16:37:09 2017 +0000 Merged in optimized_routines (pull request #87) Generalize the optimized, order 1, direct current deposition, for arrays of different shapes Approved-by: Henri VINCENTI commit 18ec47a91bccb4c1f04bd9c31f997fd03cb6ab87 Author: Remi Lehe Date: Thu Apr 20 08:39:27 2017 -0700 Added the attribute PARAMETER src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 881ea122614c80315762df1ae0736b245750c945 Merge: c8b96282 d0fe9c0a Author: Remi Lehe Date: Wed Apr 19 16:05:55 2017 +0000 Merged in documentation (pull request #86) Update documentation of picsar functions commit c8b96282647237610c5533166cdbd87b76b8bc7c Merge: 063e5875 a67bb550 Author: Remi Lehe Date: Wed Apr 19 16:05:06 2017 +0000 Merged in match_more_functions (pull request #83) Match more functions Approved-by: Henri VINCENTI commit a67bb550c9f5815976ff08469083c5f655f99d24 Author: Remi Lehe Date: Wed Apr 19 07:42:12 2017 -0700 Changed calls of 2d esirkepov routines in tests Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 commit d2bdb15311ac403baf945699515f0c10e555fb92 Author: Remi Lehe Date: Tue Apr 18 16:13:45 2017 -0700 Prevent Forthon from compiling the low-level direct deposition function src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 504d833e56e94d9032c16b60df2de607c90cd443 Author: Remi Lehe Date: Tue Apr 18 15:26:30 2017 -0700 Revert change in Makefile Makefile commit 46458dc17aadcf932d351da36b0cee24f44c6540 Author: Remi Lehe Date: Tue Apr 18 15:25:35 2017 -0700 Remove unused variable Makefile src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 38b5892db40a9c111f6d47102e2e2273277bc8de Author: Remi Lehe Date: Tue Apr 18 15:17:14 2017 -0700 Fix automated tests Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 commit d0fe9c0a5e4970c5efc5905ec04979ab59497909 Author: Remi Lehe Date: Tue Apr 18 14:28:46 2017 -0700 Added documentation for 3D gathering functions src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 commit 8c0822c194e5907aae24f39c26716f0f7803568b Author: Remi Lehe Date: Tue Apr 18 14:06:10 2017 -0700 Added documentation for 2D gathering functions src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 54d99be2c12a47fd7ccdaff6862cb9bedb23ec96 Author: Remi Lehe Date: Tue Apr 18 13:50:47 2017 -0700 Documented the interface of the current deposition routines src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit 063e58756690587d94fc538b5b5301bc548facc3 Merge: cd845c06 0124c6a3 Author: Guillaume Blaclard Date: Tue Apr 18 14:38:33 2017 +0000 Merged in reinjection_general (pull request #69) Generalization of the reinjection to accept all combinations commit cd845c06a6bde338c345e633290298f9cd3e7156 Merge: 22226bb1 ba7cd945 Author: Remi Lehe Date: Tue Apr 18 14:25:29 2017 +0000 Merged in match_fields (pull request #61) Adapt PICSAR, to work with staggered/nodal fields having different shapes Approved-by: Henri VINCENTI commit 22226bb1c8aa540cd86bcf5990ebc5812938c732 Merge: 370c9f20 6d4932ba Author: Remi Lehe Date: Tue Apr 18 12:49:55 2017 +0000 Merged in revert_to_do_not_wrap (pull request #84) Revert 'Re-used existing #do not parse flag' commit 724a181c471670a1e9e4569f88cc820e5f671a89 Merge: 65802e42 ba7cd945 Author: Remi Lehe Date: Wed Apr 12 15:40:59 2017 -0700 Merge branch 'match_fields' into optimized_routines commit 014c8e275a7f6c9cf7066733e9e4dbbca3da8485 Author: Remi Lehe Date: Tue Apr 11 21:26:51 2017 -0700 Remove intermediate temporary variables src/field_gathering/field_gathering_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 80478027410da24c37ebb3a5ed7f89591c3ff18f Author: Remi Lehe Date: Tue Apr 11 14:22:33 2017 -0700 Correct 2D esirkepov calls in tiling routine src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit bde63b5be4d4cf507f937c3ccff6cb1a057524d5 Merge: 5e44dedf ba7cd945 Author: Remi Lehe Date: Tue Apr 11 10:11:21 2017 -0700 Merge branch 'match_fields' into match_more_functions commit ba7cd945edb63afb8b11ba01164b912866cb07c3 Merge: 212db0f1 6d4932ba Author: Remi Lehe Date: Tue Apr 11 10:11:03 2017 -0700 Merge branch 'revert_to_do_not_wrap' into match_fields commit 6d4932ba8d749d631b72b64016da1df1ced0085d Merge: 4f8d3e3e 370c9f20 Author: Remi Lehe Date: Tue Apr 11 09:22:36 2017 -0700 Merge branch 'master' into revert_to_do_not_wrap commit 370c9f206478dde80fd2a7b44d57b7dab7ef8bee Merge: 8434a35e 15ddcd79 Author: Remi Lehe Date: Tue Apr 11 09:22:13 2017 -0700 Merge branch 'master' of https://bitbucket.org/berkeleylab/picsar commit 8434a35e43cc4e52f6684a00b6f55f7df05ea1a1 Author: Remi Lehe Date: Tue Apr 11 07:54:34 2017 -0700 Update shippable file shippable.yml commit 15ddcd7905839b842e31b6e71f91c49b4266229b Author: Jean-Luc Vay Date: Tue Apr 11 08:41:11 2017 -0700 Changed vxold to uxold, etc. python_libs/em3dsolverPXR.py commit 5e44dedf912ec6439cfbab722a73820ae9b89c06 Author: Remi Lehe Date: Mon Apr 10 23:00:17 2017 -0700 Corrected automated tests Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 commit 2d0227715c52940ee493eb355dc1aaac66bb8a2c Author: Remi Lehe Date: Mon Apr 10 22:26:20 2017 -0700 Correct automated tests Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 commit 4ae70c99bc95928b89c51dfb2aca9ef38f771773 Author: Remi Lehe Date: Mon Apr 10 21:36:48 2017 -0700 Correct type declaration in esirkepov function Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit 4f8d3e3e89b0a71733eb56f5fd97f91cbf7e2c3c Author: Remi Lehe Date: Mon Apr 10 17:17:59 2017 -0700 Revert 'Re-used existing #do not parse flag' This reverts commit c7abaf5c3455baa289ded9a853743b5dceaa2859. utils/forthon_parser/forthon_parser.py commit 682b2c6b6266f5cbc07c5ff033413f2260b269b6 Author: Remi Lehe Date: Mon Apr 10 21:31:50 2017 -0700 Add matplotlib in automated tests shippable.yml commit 156e0f27a22ec09e5799f69f7c8411a75b3363e5 Author: Remi Lehe Date: Mon Apr 10 17:23:45 2017 -0700 Corrected typo src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit ed9b051a492dbc40fe436ef7b85dcac2904f2257 Author: Remi Lehe Date: Mon Apr 10 17:10:30 2017 -0700 Adapt the 2D esirkepov generic function Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit d6b8ac102f2ea17413414a9f84f6a16352294cea Author: Remi Lehe Date: Mon Apr 10 16:09:09 2017 -0700 Started changing interface of 2d esirkepov functions src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 9adb5d74bcf425a2e24ec02da45499be1f2b9523 Author: Remi Lehe Date: Mon Apr 10 13:49:47 2017 -0700 Revert flag debug to flag prod Makefile commit 14df9cf814894bc996fa3714fa11641ee1085a57 Author: Jean-Luc Vay Date: Mon Apr 10 13:24:04 2017 -0700 Added support for recording old positions and velocities in empxr.step(). python_libs/em3dsolverPXR.py commit 08ed4277dcbc7358e19008e547f6804cb473cd3a Author: Remi Lehe Date: Mon Apr 10 13:22:33 2017 -0700 Fix automated tests Acceptance_testing/Gcov_tests/field_gathering_test.F90 Makefile commit a9de091fd2d5744a685adca02e69204964c7cceb Author: Remi Lehe Date: Mon Apr 10 13:12:01 2017 -0700 Fix automated tests Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 commit 1eaad5d6f9911e0f4fac3903af33d53ca95eb869 Author: Remi Lehe Date: Mon Apr 10 13:04:41 2017 -0700 Correct argument passing Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 commit f75c529983edd939d5bba4c42f816c437e640d73 Author: Remi Lehe Date: Mon Apr 10 10:03:59 2017 -0700 Correct function calls in automated tests Acceptance_testing/Gcov_tests/field_gathering_test.F90 commit f00ecb5949ecc3ed9f284299300af3919890d61b Author: Remi Lehe Date: Mon Apr 10 09:59:14 2017 -0700 Correct calls to the 2D esirkepov functions src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 6cf05bd515c1e06e1f14acc12279d50a514dc49e Author: Remi Lehe Date: Mon Apr 10 09:51:39 2017 -0700 Corrected new 2d routines src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 commit 035f12747522eb6b6f4c6e3b7a724617e56e558f Author: Remi Lehe Date: Mon Apr 10 09:31:32 2017 -0700 Adapted the automated tests Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 commit 499981f31120aa530b7a6b3b7550273b31c53dcc Author: Remi Lehe Date: Mon Apr 10 09:21:43 2017 -0700 Correct typos src/field_gathering/energy_conserving/field_gathering_on_3d.F90 commit b641b33682ed488621511119c6ba4cb1f5e19a8f Author: Remi Lehe Date: Mon Apr 10 09:16:43 2017 -0700 Adapted the interface of the 2D field gathering functions src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/field_gathering_manager_2d.F90 commit 28dd85209f297b6c57cd113d406ea297a16c9065 Author: Remi Lehe Date: Mon Apr 10 09:05:44 2017 -0700 Correct pre-compiler directives src/field_gathering/field_gathering_manager_3d.F90 commit 2289d9a9a38dbccc8beaaaa646deba71e2c1d5fe Author: Remi Lehe Date: Mon Apr 10 08:55:52 2017 -0700 Changed the interface of the generic field gathering routine Acceptance_testing/Gcov_tests/field_gathering_test.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 93d7fcb40963a5f89e524322f4e845612890924a Merge: 9abb9d7f 212db0f1 Author: Remi Lehe Date: Mon Apr 10 08:36:57 2017 -0700 Merge branch 'match_fields' into match_more_functions commit 29a980c6afdd71ede04c1cf4c3d5c54ddcf2ab7c Author: mathieu_lobet Date: Mon Apr 10 05:38:02 2017 -0700 Add debug_spectral in makefile Makefile commit 65802e4275872aa64842b40b440d5cd6a71d5ec4 Author: Remi Lehe Date: Sat Apr 8 11:57:26 2017 -0700 Simplified and generalized the 1, 1, 1 optimized direct deposition src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 212db0f19ee0d730e8ad31bc2c5b61e74a4c6237 Author: Remi Lehe Date: Sat Apr 8 12:16:56 2017 -0700 Add missing Forthon flag src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 commit 4c3396ea54ee680d68f015458c6f5dd754110bf5 Author: Remi Lehe Date: Sat Apr 8 10:44:06 2017 -0700 Replaced compilation flag Makefile commit aca3016169864d702c5a7e2a5bd118fdc47f0db9 Merge: f2bccd5a 6a8e365d Author: Remi Lehe Date: Sat Apr 8 10:22:05 2017 -0700 Merge branch 'master' into match_fields commit 6a8e365d76426bcddbb7d11f61950a345c5f5686 Merge: 3294f0d8 fcebdcde Author: Guillaume Blaclard Date: Sat Apr 8 00:17:48 2017 +0000 Merged in file_linting (pull request #82) Remove trailing spaces and white lines commit fcebdcde099a72a2232fafa216be9320b330295e Author: Guillaume Blaclard Date: Fri Apr 7 17:15:15 2017 -0700 Remove trailing spaces and white lines python_libs/em3dsolverPXR.py commit f2bccd5aa59efea72a3ecb357d1daea802428039 Author: Remi Lehe Date: Fri Apr 7 15:06:52 2017 -0700 Adapt the optimized field gathering routines (in 3D) Acceptance_testing/Gcov_tests/field_gathering_test.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 0cc4e80297c5550705130f339abf06dd6563c5fc Author: Remi Lehe Date: Fri Apr 7 14:50:59 2017 -0700 Correct some of the field gathering functions Makefile src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 commit 7c31923bf2ad11a12bce22cbe564b02e528a78e4 Author: Remi Lehe Date: Fri Apr 7 12:01:21 2017 -0700 Update the automated tests Acceptance_testing/Gcov_tests/field_gathering_test.F90 commit d129c31cd6addd84c67b26bbcecf327721790922 Author: Remi Lehe Date: Fri Apr 7 11:28:20 2017 -0700 Changed the interface of more field gathering routines src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 3294f0d833e261cbc29ae72570afab3711a5c71a Author: Remi Lehe Date: Fri Apr 7 09:50:42 2017 -0700 Remove unused variables src/field_gathering/field_gathering_manager_3d.F90 commit 23a2a9e3545d31b61a649f85ef879eb69c111a17 Merge: 5a3628c7 c7abaf5c Author: Remi Lehe Date: Fri Apr 7 14:08:13 2017 +0000 Merged in do_not_wrap (pull request #77) Forthon preparser: allow flag #do not wrap commit c7abaf5c3455baa289ded9a853743b5dceaa2859 Author: Henri VINCENTI Date: Fri Apr 7 15:56:48 2017 +0200 Re-used existing #do not parse flag utils/forthon_parser/forthon_parser.py commit bdc01144a9a2eb568d401fca2f983b7ea0a89bb1 Merge: a1371c07 5a3628c7 Author: Remi Lehe Date: Thu Apr 6 23:03:34 2017 -0700 Merge branch 'master' into match_fields commit 5a3628c71fe2de5831dd3b77ac6d701e3458d8be Merge: 283afd9d 84faeb82 Author: Remi Lehe Date: Fri Apr 7 06:02:58 2017 +0000 Merged in remove_generic (pull request #80) Remove the name _generic in the deposition routines commit 84faeb82a112590128c083e727cb7ed57330050d Author: Remi Lehe Date: Thu Apr 6 22:43:48 2017 -0700 Remove the name _generic in the deposition routines Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit a1371c0799063467c34c22d0161effe1597b2246 Author: Remi Lehe Date: Thu Apr 6 21:17:06 2017 -0700 Update interface of all the scalar 3d current depositions Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit fa6ed9db2d3813683f5c0a465d4b94546676e346 Author: Remi Lehe Date: Thu Apr 6 17:05:14 2017 -0700 Correct syntax error src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit b042eb119fc9fe9c7bcc7a5767eee6b2795805e7 Author: Remi Lehe Date: Thu Apr 6 15:07:07 2017 -0700 Fix error when calling getb function src/field_gathering/field_gathering_manager_2d.F90 commit 283afd9dd411b2fbcbf7ba729ac208125e255792 Merge: 9b9de087 8c9a34d2 Author: Remi Lehe Date: Thu Apr 6 21:59:24 2017 +0000 Merged in move_getb_routine (pull request #79) Move the arbitrary order getb function commit b1bb03873254643cfd138728d17146252aac70a6 Author: Remi Lehe Date: Thu Apr 6 14:56:43 2017 -0700 Prevent Forthon from wrapping the arbitrary order getb function src/field_gathering/energy_conserving/field_gathering_on_2d.F90 commit 8cf84ba94f0f923b220046e23cdeeb0a18de3baf Author: Remi Lehe Date: Thu Apr 6 14:48:06 2017 -0700 Updated interface of the arbitrary order getb function in 2d Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/field_gathering_manager_2d.F90 commit 62a0b5c496dcb314bac8ecf8dbe8aa2fa4e92005 Merge: eca7454f 8c9a34d2 Author: Remi Lehe Date: Thu Apr 6 14:43:42 2017 -0700 Merge branch 'move_getb_routine' into match_fields commit 8c9a34d2a191cbd75e879b688b45cd5819fa4c24 Author: Remi Lehe Date: Thu Apr 6 14:35:22 2017 -0700 Move the arbitrary order getb function This function was in the file field_gathering_o3_2d.F90 but is now in the file field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 commit eca7454f24c631fb106b900a7a44ef6db5129808 Author: Remi Lehe Date: Thu Apr 6 14:26:55 2017 -0700 Updated 2d field gathering functions src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/field_gathering_manager_2d.F90 commit 4bc71e7433ce34249cbc5a476145c4c2a4fd5158 Author: Remi Lehe Date: Thu Apr 6 13:53:33 2017 -0700 Add new field gathering functions and update the corresponding tests Acceptance_testing/Gcov_tests/field_gathering_test.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 9abb9d7fdbd96838fecf200a7f211526546b1e32 Merge: 5819ded5 87bdf817 Author: Remi Lehe Date: Thu Apr 6 08:28:13 2017 -0700 Merge branch 'match_fields' into match_more_functions commit 87bdf8176029444028243678d17aabd5a1bfa8ad Merge: e5061b37 9b9de087 Author: Remi Lehe Date: Thu Apr 6 08:21:35 2017 -0700 Merge branch 'master' into match_fields commit 9b9de0873606279ad14842be47f731221783e52f Merge: f203ff67 830bcf4d Author: mathieu lobet Date: Thu Apr 6 15:20:50 2017 +0000 Merged in Makefile-test-update (pull request #78) Update Makefile and gcov tests commit 5819ded59dc22da07976ec3c6149d42f5739bd0c Author: Remi Lehe Date: Thu Apr 6 08:05:01 2017 -0700 Generalized the rest of the 2d esirkepov routines Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit 830bcf4d15477a500e270a6c045dc1505a37d7bf Author: mathieu lobet Date: Thu Apr 6 16:48:23 2017 +0200 In this commit: - update of the makefile help - correction gcov test with guard cell init - correction gcov test with mpi_finalize .gitignore Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_3d_test.F90 Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 Makefile commit e5061b37778e45f6c8faf65a74f325763a18244a Author: Remi Lehe Date: Wed Apr 5 22:12:39 2017 -0700 Add generic esirkepov routine src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 798f9b7cbd947e50fffdf39eba29d42ffe8b7f82 Author: Remi Lehe Date: Wed Apr 5 17:13:40 2017 -0700 Update automated tests for new esirkepov interface Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 commit be9790344f5dc088f9e553c208e7acab8e612d57 Author: Remi Lehe Date: Wed Apr 5 17:07:24 2017 -0700 Adapted arbitrary order esirkepov function src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit b44f273c6cbe754d9e58e008c7f07cfd8c737ac5 Author: Remi Lehe Date: Wed Apr 5 17:05:32 2017 -0700 Adapted the esirkepov non-optimized functions src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit 29ddb6ffb991392504a17908d193c3fb8ef2d7ca Author: Henri VINCENTI Date: Wed Apr 5 23:08:03 2017 +0200 Added outputs to check if threading enabled with MPI_THREAD_FUNNELED for FFTW MPI src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit f1ba479a036694a1357bdf14cc0a55253f7cf7d8 Author: Henri VINCENTI Date: Wed Apr 5 09:04:35 2017 +0200 Removed damned useless print statements :) src/parallelization/mpi/mpi_routines.F90 commit 2680e3dbf11f3746936b6d38a5b7538666adc17d Author: Henri VINCENTI Date: Wed Apr 5 08:53:29 2017 +0200 addded precision flag for unit pulse amp src/submain.F90 commit a93a1e7237190b757118fae2a9918f77e2ef57e0 Author: Henri VINCENTI Date: Wed Apr 5 08:52:51 2017 +0200 Removed unit pulse for scaling tests purposes src/submain.F90 commit a2a8b2985495d95bdb62d6648cd924f71bad3bf4 Author: Henri VINCENTI Date: Wed Apr 5 08:50:33 2017 +0200 Removed unit pulses for scaling tests src/submain.F90 commit 65af87dcb728416a207874c3f04fc5a0e73bc413 Merge: 953b3619 9bca2a10 Author: Henri VINCENTI Date: Wed Apr 5 08:32:39 2017 +0200 Merge branch 'pxr_psatd_gb' of https://bitbucket.org/berkeleylab/picsar into pxr_psatd_gb commit 953b36190d17dad3d2246c11584c5529ca6961aa Author: Henri VINCENTI Date: Wed Apr 5 08:32:00 2017 +0200 Removed useless print statements src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit 68f177cd98144a35b76a12815fe0ac3cae2a504f Author: Henri VINCENTI Date: Wed Apr 5 08:27:31 2017 +0200 Removed useless print statements src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit 47b5eb00eff5bdd1dcd73012508ad48f4e16753f Author: Henri VINCENTI Date: Wed Apr 5 08:08:37 2017 +0200 Added flag l_plasma src/diags/diags.F90 commit 9bca2a1018f0905e2a981f3ea46b870b487a9efe Author: Henri VINCENTI Date: Tue Apr 4 22:41:41 2017 +0200 Suppressed avetimes in io src/ios/simple_io.F90 commit f76ee7f1d0593a1b21b4c2d2d2e39b0b11d3a627 Author: Henri VINCENTI Date: Tue Apr 4 22:35:40 2017 +0200 last changes for compilation on Cori src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 commit 1140683507f3d9ad67c635914cdac9bd7de23619 Author: Henri VINCENTI Date: Tue Apr 4 22:20:44 2017 +0200 Added implicit none statement for intel compiler src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 commit 1188a9cda31a8d6952b64950026de5be7dd72bff Author: Henri VINCENTI Date: Tue Apr 4 22:14:56 2017 +0200 Added time statistics src/diags/diags.F90 src/initilization/control_file.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit ed225940f4926888bb5507891d3cc990ae566c11 Author: Henri VINCENTI Date: Tue Apr 4 21:34:28 2017 +0200 Updated maxwell push in manager src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit 9eb5eb1b4e9dfbadf753539fba3431d598f7ab2f Author: Henri VINCENTI Date: Tue Apr 4 20:51:59 2017 +0200 Corrected pointer declaration src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit f78102e62ad78d8a32683e953e685a29b72f8b0d Author: mathieu_lobet Date: Tue Apr 4 09:10:28 2017 -0700 Correction bug compilation Intel src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 06886ab424638567e549399f4f5989ab70d0cc41 Author: Henri VINCENTI Date: Tue Apr 4 17:42:11 2017 +0200 Last changes src/parallelization/mpi/mpi_routines.F90 commit edee6bcdb258b01a98d3c9dfcd4551dc1ef8f12d Author: Henri VINCENTI Date: Tue Apr 4 17:41:39 2017 +0200 updated shared mem version src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit 4741a986e95b65ebe767144233d81075bc5b2e0b Author: Henri VINCENTI Date: Tue Apr 4 17:35:10 2017 +0200 Added corrections for MPI FTW FFTW with global FFTs now works perfectly src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit c56596127427ead5e058f5f52ce7e4b6d1e8888f Author: Henri VINCENTI Date: Tue Apr 4 15:53:28 2017 +0200 Corrected errors Doing FFT on nx+2*nxguards instead of nx+2*nxguards+1 Added temporary arrays of correct size for the FFT (like in the distributed one) src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/initilization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit fcdc9ee4299d420e26315ad92a949c90512b9398 Author: Remi Lehe Date: Mon Apr 3 16:54:20 2017 -0700 Fix automated tests Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 commit ccd81a3a02d7f3600c89949aebe228e908ee7d4e Author: Remi Lehe Date: Mon Apr 3 15:18:18 2017 -0700 Fixed automated tests Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit ee1a4ac85b81018189e46df038b8b51ad8379980 Author: Remi Lehe Date: Mon Apr 3 14:35:57 2017 -0700 Adapt field gathering for 2D src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/field_gathering_manager_2d.F90 commit 98bb34d80df197b60d2feb057796ddd43359d2e1 Author: Remi Lehe Date: Mon Apr 3 14:14:27 2017 -0700 Adapt the first order 2d current deposition src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit ff00c90fc19aad40e4f2ce5dc0187eb8a4a91227 Author: Remi Lehe Date: Mon Apr 3 11:02:37 2017 -0700 Add argument lvect src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 85b96f812b813fcc9a43c3c8fcbcdc9e997b2c8a Author: Remi Lehe Date: Mon Apr 3 10:43:40 2017 -0700 Adapted current deposition for arrays of various shapes in 2D src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit f273a4ead3e293f69b13283c767d1a098257f3f5 Author: Remi Lehe Date: Mon Apr 3 10:25:05 2017 -0700 Slight change to shape declaration src/field_gathering/field_gathering_manager_2d.F90 commit 84578ed16e4bb6fbee5b681e8b6afd393ee04c2c Author: Remi Lehe Date: Mon Apr 3 10:11:57 2017 -0700 Fix typos src/field_gathering/field_gathering_manager_2d.F90 commit f502b13ecc6147cbc2e6f65706f5c876290f2dd8 Author: Remi Lehe Date: Mon Apr 3 10:07:39 2017 -0700 Adapted 2D field gathering for arrays of different shapes src/field_gathering/field_gathering_manager_2d.F90 commit db1d8a8463c4224e581a62a4a02698bd6cd29d0e Author: mathieu_lobet Date: Mon Apr 3 05:41:24 2017 -0700 Update time stat for scalings. Additon of the times spent in the different steps of the PIC loop. src/ios/simple_io.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 5bfa71488e168d09b174d91f1f3a7542de3dd1eb Author: Henri VINCENTI Date: Mon Apr 3 12:13:21 2017 +0200 Changed coeff norm for fftw mpi src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit 3fc3f7ae25dbdcf02287c7be5461caa134cf2b3d Author: Henri VINCENTI Date: Mon Apr 3 12:11:46 2017 +0200 Changed the CPU split for fftw_with_mpi so that it corresponds to a FT with same number of points src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/parallelization/mpi/mpi_routines.F90 commit 7cc3281a25544f474781529aa3d1c8142fecdc64 Author: Henri VINCENTI Date: Mon Apr 3 10:56:36 2017 +0200 Uodated main for time statistiscs src/main.F90 commit cd738d40764cf7184052a2fc582d1bf2ae87b16d Author: Henri Vincenti Date: Mon Apr 3 01:33:48 2017 -0700 Modified output gb stat in main.f90 src/main.F90 commit 6661835bb8e1ddc0f35afad77c7155d305ddd2ae Author: Remi Lehe Date: Sat Apr 1 22:54:10 2017 -0700 Added flags "do not wrap" src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit 2a1d36d44ad1884ccaf554616a047339e9faa9da Author: Remi Lehe Date: Sat Apr 1 22:11:07 2017 -0700 Forthon preparser: allow flag #do not wrap utils/forthon_parser/forthon_parser.py commit f203ff6776272d785e54f56dfbd10600aa4c0beb Author: Remi Lehe Date: Sat Apr 1 22:37:56 2017 -0700 Remove trailing white spaces and empty lines utils/forthon_parser/forthon_parser.py commit 980fff8382371658cb3be7f9993fdfa583d45956 Author: Remi Lehe Date: Sat Apr 1 22:11:07 2017 -0700 Forthon preparser: allow flag #do not wrap utils/forthon_parser/forthon_parser.py commit 92692c083dff5623461d30906890eac292a64c51 Author: Henri VINCENTI Date: Sat Apr 1 20:44:42 2017 +0200 Fixed and tested MPI version of FFTW Makefile src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit aaedccb9c0954f58ab0f089fdbf6de6d7959b2ee Author: Remi Lehe Date: Sat Apr 1 11:03:47 2017 -0700 Corrected type of variable passed for type_rz_depose src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 0e9508d3604e2a7f8402e37d4406fae364cca055 Author: Henri VINCENTI Date: Sat Apr 1 14:59:17 2017 +0200 Modified init with nsteps src/initilization/control_file.F90 src/submain.F90 commit 8434f695c7fe3cfac35a45c60d674db0adaa5aac Author: Remi Lehe Date: Tue Mar 28 15:51:32 2017 -0700 Adapt 2D maxwell picsar function for different array shapes src/field_solvers/Maxwell/yee_solver/warpx_yee.F90 commit 07644ce8bedd441a5c2ff0468937747d56e69a19 Author: Remi Lehe Date: Sun Mar 26 09:08:58 2017 -0700 Fix the "do not parse" statements src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit e887ffb32dddd7a35a9a0345c25f3fad2e49476e Author: Remi Lehe Date: Sun Mar 26 08:47:13 2017 -0700 Revert 2D changes src/field_gathering/field_gathering_manager_2d.F90 commit a2b09fd4815679a6a34f650db722d7ae8fbcfb93 Author: Remi Lehe Date: Sat Mar 25 11:11:11 2017 -0700 Use new current deposition interface in the automated tests Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 commit 15842464ece764ce99adb8be4cd38f8c76a47c43 Author: Remi Lehe Date: Sat Mar 25 10:28:53 2017 -0700 Suppress auxiliary file for warpx WarpX now uses the regular picsar routines for current deposition, with modified shapes src/Make.package src/particle_deposition/current_deposition/esirkepov/warpx_esirkepov_3d.F90 commit f11405ea7d16180264aa4514c88e8f8ca322c97d Author: Remi Lehe Date: Sat Mar 25 10:27:51 2017 -0700 Correct bug in the number of valid cells src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit ad969e615a9ea596ac936a72283c6e0751dd5839 Author: Remi Lehe Date: Sat Mar 25 10:08:30 2017 -0700 Adapted current deposition routines to arrays of different shapes src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit c2eb162d8b9482c4d2d1febcc9bbb0ce17e26243 Author: Remi Lehe Date: Thu Mar 23 17:05:14 2017 -0700 Prevent Forthon from parsing new functions src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 2774a824a87c0e9c1b30c79c3929dcab1d4969d8 Author: Remi Lehe Date: Wed Mar 22 20:23:01 2017 -0700 Fix the test_gcov Acceptance_testing/Gcov_tests/field_gathering_test.F90 commit 3e2c965c04009fdb44f47cd5079786fcc4ad3c1c Author: Remi Lehe Date: Wed Mar 22 17:20:08 2017 -0700 Started adapting shapes in 2D src/field_gathering/field_gathering_manager_2d.F90 commit 66600867c659fb7ed1a4c648d407d1aba1ab904a Author: Remi Lehe Date: Wed Mar 22 15:32:24 2017 -0700 Ensure that the automated tests do not fail src/field_gathering/field_gathering_manager_3d.F90 commit 79cf87ddd2b59e0b9793015c1c5823ca4931afe7 Author: Remi Lehe Date: Wed Mar 22 15:26:01 2017 -0700 Use long ints for the number of guard cells src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/particle_deposition/current_deposition/esirkepov/warpx_esirkepov_3d.F90 commit d5be3f5f18f1e96421912164b9650095294a38d7 Author: Remi Lehe Date: Wed Mar 22 14:44:14 2017 -0700 Add wrapper around generic function for field gathering src/Make.package src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/warpx_field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 41100829c10578fabeb6cd5c7b050ed9b31db7ca Author: Remi Lehe Date: Wed Mar 22 10:17:07 2017 -0700 Updated the interface of the current deposition src/particle_deposition/current_deposition/esirkepov/warpx_esirkepov_3d.F90 commit 7dd0cfb765536c9cc37d8b0b256bf00938a8029e Author: Remi Lehe Date: Tue Mar 21 22:33:53 2017 -0700 Finalize change in field gathering routine src/field_gathering/energy_conserving/warpx_field_gathering_on_3d.F90 commit 7f0bec00eb8257f46121f6cac327ca8199137ab1 Author: Remi Lehe Date: Tue Mar 21 11:56:26 2017 -0700 Changed interface to field gathering routine src/field_gathering/energy_conserving/warpx_field_gathering_on_3d.F90 commit e6f934183b0515d9d8320e9723848e8793ba6cce Author: Remi Lehe Date: Fri Feb 17 10:51:07 2017 -0800 Started implementing current deposition for the different array shapes src/Make.package src/particle_deposition/current_deposition/esirkepov/warpx_esirkepov_3d.F90 commit 75f8823026dc4ed1f375d8c21bcc7a59fdd9aad1 Author: Remi Lehe Date: Thu Feb 16 15:41:23 2017 -0800 Implemented new function for field gathering with arbitrary array shape src/Make.package src/field_gathering/energy_conserving/warpx_field_gathering_on_3d.F90 commit e52228c3189fc7567981032fb477eaa23004f01d Author: Remi Lehe Date: Fri Feb 10 09:58:16 2017 -0800 Implemented push E with matched field shapes src/field_solvers/Maxwell/yee_solver/warpx_yee.F90 commit d43d0cbcfd98b767018900476a901bc53975c102 Author: Weiqun Zhang Date: Fri Feb 10 08:31:34 2017 -0800 pass separate tile boxes for B fields to warpx_pxr_push_em3d_bvec src/field_solvers/Maxwell/yee_solver/warpx_yee.F90 commit 67cdcfabb38ae2f9e8f4f903af774cd4eab025a1 Merge: 27aaffcd 78b1636f Author: Remi Lehe Date: Thu Mar 30 00:17:19 2017 +0000 Merged in generic_current_deposition (pull request #76) Implement generic 2d esirkepov deposition commit 78b1636f71123d8e16b07be8d85fd05c175897fb Author: Remi Lehe Date: Wed Mar 29 16:37:59 2017 -0700 Fix Forthon compilation src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit f76aa3fe5f02a7706746630dfd4e5f76a144b790 Author: Remi Lehe Date: Wed Mar 29 15:44:37 2017 -0700 Finalize 2d current deposition src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 8d0cc1bf0287b7cbb02c3ed34e382846442a7b39 Author: Remi Lehe Date: Tue Mar 28 17:04:41 2017 -0700 Implement generic 2d esirkepov deposition src/Make.package src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 commit 2cb95298f4345de0616e57b664213acd5a2caaf1 Author: mathieu_lobet Date: Wed Mar 29 05:12:39 2017 -0700 Update description subroutine push_psatd_ebfield_3d src/field_solvers/Maxwell/maxwell_solver_manager.F90 commit 4ad7135cfaff1949ae6c8e1044e265607537263e Author: mathieu_lobet Date: Wed Mar 29 05:05:53 2017 -0700 Add new function push_psatd_ebfield_3d with timers in src/field_solvers/Maxwell/maxwell_solver_manager.F90 for psatd .gitignore src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/submain.F90 commit 5d457e315d09b2051fac9b2d6d40c0358b0130d7 Author: mathieu_lobet Date: Wed Mar 29 03:30:33 2017 -0700 change tab by space in submain.F90 src/submain.F90 commit a4b743a29c2f19043f2ffc0b0177a0a0663ae159 Author: mathieu_lobet Date: Wed Mar 29 02:57:36 2017 -0700 Update Makefile for SYS=cori2 MODE=prod_spectral + correction for Intel compiler in fastfft.F90 .gitignore Makefile src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 commit 27aaffcd6a347ee931220d6d3a45b78c9e80bdc6 Merge: d30da879 a52ce203 Author: Weiqun Zhang Date: Tue Mar 28 22:54:55 2017 +0000 Merged in WeiqunZhang/picsar (pull request #75) fix a bug in depose_jxjyjz_scalar_3_3_3 commit a52ce2035f193dbfa837391f30c32f09329f3792 Author: Weiqun Zhang Date: Tue Mar 28 15:50:05 2017 -0700 fix a bug in depose_jxjyjz_scalar_3_3_3 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit d30da879b8059304ec09a64acd7da06612354ff5 Merge: e747bc11 392af668 Author: Remi Lehe Date: Tue Mar 28 20:19:11 2017 +0000 Merged in test_tiling_deposition_routines (pull request #72) Update automated tests of the tiling current deposition routines commit e747bc11ec7c4b768150c45a618b1bf303165a80 Merge: 7d1e1960 6d50a764 Author: Remi Lehe Date: Tue Mar 28 20:18:49 2017 +0000 Merged in fix_tests (pull request #73) Add Python automated tests commit 7d1e1960efeb12013053648b7ae6b579a366bcb0 Merge: 99b6e93b 6edd9246 Author: Remi Lehe Date: Tue Mar 28 20:18:32 2017 +0000 Merged in faster_tests (pull request #74) Make the test faster by having them run for fewer iterations commit 6edd9246630c41513dc5510c91487b2774c40509 Author: Remi Lehe Date: Tue Mar 28 07:43:51 2017 -0700 Make the test run faster by having them run for fewer iterations Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py examples/example_decks_fortran/drifted_plasma.pixr examples/example_decks_fortran/homogeneous_plasma.pixr commit 6d50a764214226bc729f836f88a055bd4a831ca8 Author: Remi Lehe Date: Mon Mar 27 17:24:47 2017 -0700 Corrected matplotlib flag Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py examples/example_scripts_python/test_Langmuir_wave_3d.py commit c8150360be566603bfe730e4bde3fe6f3c8c1dec Merge: c995bc48 99b6e93b Author: Remi Lehe Date: Mon Mar 27 16:48:20 2017 -0700 Merge branch 'master' into fix_tests commit 99b6e93bf7cd5d16ce2d06a0ff307f7b69972456 Author: Remi Lehe Date: Mon Mar 27 16:39:06 2017 -0700 Remove matplotlib commands in automated tests Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py commit 30b8a659d5bfe1785b93efa2ebd072c5f43c4c01 Author: Henri VINCENTI Date: Tue Mar 28 00:17:19 2017 +0200 corrected spelling mistake src/parallelization/mpi/mpi_routines.F90 commit 063e5da604560e7458fa8805f301bdb31986c93d Author: Henri VINCENTI Date: Tue Mar 28 00:15:06 2017 +0200 Added array allocations in mpi src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit c995bc48adbfe38d6fd2211fc756ea67dfa81ca5 Author: Remi Lehe Date: Mon Mar 27 14:52:04 2017 -0700 Remove "do not parse" for new generic function src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 1b4ca8464a6dbf307fdc824866b96ead33b4c7b7 Author: Remi Lehe Date: Mon Mar 27 14:27:48 2017 -0700 Add Python to Picsar test suite shippable.yml commit b14c85c8d89f39f75f0f8ffb872146d5f4b93bf8 Author: Henri VINCENTI Date: Mon Mar 27 21:52:52 2017 +0200 Added CPU split fftw src/parallelization/mpi/mpi_routines.F90 commit 17a94bb564573c8b68922af045d4ffe56597c3fb Author: Henri VINCENTI Date: Mon Mar 27 23:07:57 2017 +0200 corrected error src/parallelization/mpi/mpi_routines.F90 commit 445d4841f7da04fedef16b15b05f5606864c353e Author: Henri VINCENTI Date: Mon Mar 27 22:20:52 2017 +0200 MPI get local sizes fftw src/parallelization/mpi/mpi_routines.F90 commit c104c844d12855c585807e1de0e6d599a6961f58 Author: Henri VINCENTI Date: Mon Mar 27 18:36:18 2017 +0200 Added MPI init for fftw src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/initilization/control_file.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 74a87896e91f8b80a989d2c54ee272ef59a4b297 Author: Henri VINCENTI Date: Mon Mar 27 15:09:36 2017 +0200 Corrected bugs in init of k vectors src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 src/submain.F90 commit 14a56c36337caefad3769fb7702f1839f554db2c Author: Henri VINCENTI Date: Mon Mar 27 10:02:56 2017 +0200 Added files for psaotd and Fourier init src/field_solvers/Maxwell/GPSTD_solver/fastfft.F90 src/field_solvers/Maxwell/GPSTD_solver/fourier_psaotd.F90 commit ab7295be85d8e8fcd2c9af5b7f6bf28484a34ad6 Author: Henri VINCENTI Date: Mon Mar 27 09:39:12 2017 +0200 Added Fortran version of PSAOTD Makefile examples/example_decks_fortran/homogeneous_plasma_spectral.pixr src/initilization/control_file.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 src/submain.F90 commit 392af6682fef1aea34620b3af3bdec5552814388 Author: Remi Lehe Date: Sat Mar 25 11:00:51 2017 -0700 Update automated tests Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 commit 410c98e128cdca135f2840a47c9808335f401115 Author: Remi Lehe Date: Sat Mar 25 10:50:17 2017 -0700 Remove empty lines and trailing white spaces Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_3d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/rho_deposition_3d_test.F90 commit e53370d66d2ee456d0e3fca3e90df64613aa896c Merge: 76900b44 f9b467e0 Author: Remi Lehe Date: Fri Mar 24 20:01:21 2017 +0000 Merged in generic_current_depos (pull request #71) Define a generic current deposition routine commit f9b467e0aa278cf302437c3e17001c8b17c9f844 Author: Remi Lehe Date: Fri Mar 24 11:51:26 2017 -0700 Update Make.package to include the new picsar function for WarpX src/Make.package commit 8633589621d3f39a918dfa227a276f436d513ad1 Author: Remi Lehe Date: Thu Mar 23 14:54:54 2017 -0700 Fixed the bugs on the new current deposition interface src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit db8f624c67604b4e04cae59997740c5de08a7452 Author: Remi Lehe Date: Thu Mar 23 13:56:45 2017 -0700 Added general interface to current deposition src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit 76900b446e6de39299787ce0fe097186391349e7 Author: Jean-Luc Vay Date: Wed Mar 15 16:53:10 2017 -0700 Replaced tabs with spaces. python_libs/em3dsolverPXR.py commit 794a3a2b8b85beb7eaffae90a6748ae8480089df Author: Jean-Luc Vay Date: Tue Mar 14 11:37:21 2017 -0700 Removed em3dsolverPXR.pyc. examples/example_scripts_python/em3dsolverPXR.pyc commit 7bf9979b84e140a7db36e312447c033e3a986aab Author: Jean-Luc Vay Date: Thu Mar 9 11:39:40 2017 -0800 Moved aliasparticlearrays() subroutine outside of EM3DPXR class. python_libs/em3dsolverPXR.py commit 8cfa84ce6a5ff8d2509e550b82ed7f52efe1e05f Author: Jean-Luc Vay Date: Tue Mar 7 15:52:55 2017 -0800 Fixed setting of sw0. python_libs/em3dsolverPXR.py commit 0124c6a3b0b40f8acd233d2142d7c6b1287c5a42 Author: Guillaume Blaclard Date: Fri Mar 3 18:18:17 2017 -0800 Switch float to integer in the initialization python_libs/em3dsolverPXR.py commit 0dfdf9d0f925598a8c2cfd622f28e87787c4f16e Author: Guillaume Blaclard Date: Fri Mar 3 18:13:08 2017 -0800 Generalization of the reinjection routine to accept all combinations python_libs/em3dsolverPXR.py commit c19a115308641c3023c7ca9428306574992398d8 Merge: 5fda8fa8 b3d41d5c Author: Remi Lehe Date: Fri Mar 3 10:23:33 2017 +0000 Merged in fix-weight (pull request #68) Fixed the initialization of the weights commit b3d41d5cd8a08bd4345558e72da5f863137a5d22 Author: Remi Lehe Date: Thu Mar 2 20:56:35 2017 -0800 Fixed the initialization of the weights python_libs/em3dsolverPXR.py commit 5fda8fa8958fa5ce5286c382d16137ee40f7bf95 Author: Jean-Luc Vay Date: Thu Mar 2 17:54:59 2017 -0800 Added support for velocities passed to addparticlesPXR(). python_libs/em3dsolverPXR.py commit 5ad9925c540c94a70407a624bb75e05967d3465b Author: Jean-Luc Vay Date: Thu Mar 2 17:36:00 2017 -0800 Fixed problem with weights initialization in addparticlesPXR(). python_libs/GPSTDPXR.py python_libs/em3dsolverPXR.py commit eef72bfd43f4109dd43a9b11e22288f5e9154b87 Merge: e238ddc6 91e471be Author: Henri VINCENTI Date: Thu Mar 2 19:46:22 2017 +0000 Merged in pxr_fix_reinject_bound (pull request #66) Pxr fix reinject bound Approved-by: Henri VINCENTI commit 91e471be247009990e3ce5742f2dc912b92a730a Author: Henri VINCENTI Date: Thu Mar 2 18:36:13 2017 +0100 Reduced lengths of OMP declaration line (was too long) src/boundary_conditions/particle_boundaries.F90 commit 7934ffa5c08c9a9c8c11c9d206a352f654afde7a Author: Henri VINCENTI Date: Thu Mar 2 17:54:49 2017 +0100 Corrected indentation error by G. Blaclard in GPSTDPXR python_libs/GPSTDPXR.py commit f39586b797162a208c928d2f48f3b923bd28d971 Author: Henri VINCENTI Date: Thu Mar 2 17:41:12 2017 +0100 Corrected errors in particle boundary setup python_libs/em3dsolverPXR.py commit a4f86739edd5abca8f8f112bf1b5eca653177297 Author: Henri VINCENTI Date: Thu Mar 2 17:14:17 2017 +0100 Corrected small bug in particle reinjection (all components of velocity have to be set to 0) Changed logical boundary flags for particles. Particle boundary can now be in another MPI domain than field boundary BUT only for absorbng/reinjecting boundaries. Otherwise, particle boundaries are forced to field boundaries python_libs/em3dsolverPXR.py src/boundary_conditions/particle_boundaries.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit e238ddc61c023ad82a652454ffd7bea8c211e52e Merge: cfa00edf 7766d629 Author: Henri VINCENTI Date: Wed Mar 1 10:52:01 2017 +0000 Merged in pxr_dodepos (pull request #65) Added option ldodepos in PXR. Modified em3dsolverPXR for coupling with WARP commit 7766d62971a8c613bf915525035d1b3c1e256163 Author: Henri VINCENTI Date: Wed Mar 1 10:23:23 2017 +0100 Minor edition src/modules/modules.F90 commit f8afee16b4262f2a16504730fa180b3f2a5b8898 Author: Henri VINCENTI Date: Tue Feb 28 18:01:29 2017 +0100 Added option ldodepos in PXR. Modified em3dsolverPXR for coupling with WARP Acceptance_testing/Python_tests/test/test.py python_libs/em3dsolverPXR.py src/modules/modules.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 commit cfa00edf7bffdd2f513832bfa6196ca8a8160474 Merge: 6c3ac49e b8c5b678 Author: Remi Lehe Date: Tue Feb 28 13:31:52 2017 +0000 Merged in makefile_lib (pull request #63) Makefile lib Approved-by: Remi Lehe Approved-by: Henri VINCENTI commit 6c3ac49e83812b694651b5d4a253e239beaeadb4 Merge: 75fd44dc e07ee02c Author: Henri VINCENTI Date: Mon Feb 27 21:44:09 2017 +0000 Merged in fix_moving_window (pull request #64) Corrected erros in moving window commit e07ee02c2c8a088e0df17f9e3c97325c52d6a6c3 Author: Henri VINCENTI Date: Sun Feb 26 11:15:47 2017 +0100 Corrected erros in moving window python_libs/em3dsolverPXR.py src/boundary_conditions/field_boundaries.F90 commit b8c5b678a8d5930674db339b2353db3b58a2b775 Author: Remi Lehe Date: Fri Feb 24 08:35:53 2017 -0800 Correct Makefile and .shipabble.yml to ensure automatic tests pass Makefile shippable.yml commit 180d54e71f6dddc0593d1de1509bcd54beb6facc Author: Haithem Kallala Date: Mon Feb 20 13:34:24 2017 +0100 adding lib construction for gnu compiler (static and dynamic libs) Acceptance_testing/Fortran_tests/test_Langmuir_wave/clean Acceptance_testing/Fortran_tests/test_Langmuir_wave/launcher Makefile commit b1acec27cc71945645d22a43004a8494fab62cbc Author: Haithem Kallala Date: Mon Feb 20 13:54:11 2017 +0100 edit readme file Makefile README.md commit 0cb79c60a4f5c029b10e9c254a6d8b11f00b0d33 Author: haithem kallala Date: Tue Feb 21 11:06:11 2017 +0100 medit shipabble shippable.yml commit 75fd44dcbde9747e6b4d121a06885f52fdf5a311 Author: Remi Lehe Date: Thu Feb 23 17:05:43 2017 -0800 Remove white lines and trailing spaces in Makefile Makefile commit ae53465ccd9a37f44ce9d349b43e49fe11503eba Author: Henri VINCENTI Date: Wed Feb 22 17:28:48 2017 +0100 Corrected some errors that was causing wrong values of pids except for wpid src/boundary_conditions/particle_boundaries.F90 src/parallelization/tiling/tiling.F90 commit 5f56ee3addb3e89753d2487e6cb1a3e586f7020c Author: Henri VINCENTI Date: Tue Feb 21 10:59:41 2017 +0100 Removed useless print statements python_libs/em3dsolverPXR.py commit 6c11277ba4b6d632b7ec841dea2f131fb812c9c9 Merge: 07371649 d268a67b Author: Henri VINCENTI Date: Mon Feb 20 07:35:44 2017 +0000 Merged in particle_extents (pull request #59) Particle extents commit d268a67ba2c0d1472846afcc603aa4574752ee6c Author: Henri VINCENTI Date: Sun Feb 19 22:20:07 2017 +0100 Corrected bugs in MPI particle exchange with reinjection python_libs/em3dsolverPXR.py src/boundary_conditions/particle_boundaries.F90 commit 9450aebd031188b7ad34eb250ac5f426ae7aaab8 Author: Henri VINCENTI Date: Sat Feb 18 14:52:29 2017 +0100 Split long lines OMP declaration src/boundary_conditions/particle_boundaries.F90 commit 91a2cb33d00e51f099358ea5235cd5faf5144f1b Author: Henri VINCENTI Date: Fri Feb 17 13:25:55 2017 +0100 Added particle xtents/boundaries python_libs/em3dsolverPXR.py src/boundary_conditions/particle_boundaries.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_routines.F90 commit 07371649934bea51475216c1d9667d1acbb596e0 Merge: 83a51250 56b5ab16 Author: Henri VINCENTI Date: Wed Feb 15 18:13:22 2017 +0000 Merged in pxr_2d_party (pull request #58) Set party to 0 for 2D cases with PXR. Otherwise, NaN values are dumped for y with diags. commit 56b5ab1643fe68ca61027761efd6c0705c1c11b1 Author: Henri VINCENTI Date: Wed Feb 15 17:18:42 2017 +0100 Set party to 0 for 2D cases with PXR. Otherwise, NaN values are dumped for y with diags. src/parallelization/tiling/tiling.F90 commit 83a512505781c627cca35967bd1b18b10d503cba Merge: d4a97a92 d053bbe2 Author: Henri VINCENTI Date: Wed Feb 15 15:36:28 2017 +0000 Merged in picsar_precision (pull request #57) Added PICSAR_precision module relative to precision declaration of ints, floats and complexs commit d053bbe2c83552657426c78942dfde1d553b4fbb Author: Henri VINCENTI Date: Tue Feb 14 10:36:16 2017 +0100 Added PICSAR_precision module relative to precision declaration of ints, floats and complexs src/modules/modules.F90 commit d4a97a922adb3312beb8baa5c5627728a793ae0b Merge: aba9c737 9ad5cbe9 Author: Henri VINCENTI Date: Sat Feb 11 20:09:49 2017 +0000 Merged in fix_diff_warp_pxr (pull request #56) Corrected bugs in 2D field gathering manager commit 9ad5cbe901922163e532dd50484dd4ec06d1cfa2 Author: Henri VINCENTI Date: Sat Feb 11 19:11:34 2017 +0100 Added some comments src/particle_pushers/particle_pusher_manager_2d.F90 commit 6a95e2f73261cfeb74a9a35fccad1e46c372d33e Author: Henri VINCENTI Date: Sat Feb 11 19:01:44 2017 +0100 Corrected bugs in 2D field gathering manager src/particle_pushers/particle_pusher_manager_2d.F90 commit aba9c737c4fe32c3a218006e0cfc96ef969cca4d Author: Jean-Luc Vay Date: Fri Feb 10 04:00:33 2017 -0800 Minor fix. src/field_gathering/field_gathering_manager_2d.F90 commit ef97a88b5f5919b9be894e1adbc3396ff2ea8cf4 Author: Jean-Luc Vay Date: Fri Feb 10 03:57:31 2017 -0800 Added support for no field gather when field_gathe_algo<0. python_libs/em3dsolverPXR.py src/field_gathering/field_gathering_manager_2d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit 543772cac7d65cefd4fbaa26af3773aa76277e46 Author: Jean-Luc Vay Date: Fri Feb 10 03:05:44 2017 -0800 Added support for pidpairs in addparticles. python_libs/em3dsolverPXR.py commit cf69d5b10f9fa27215505ec32fcf9efbf9db0ab8 Merge: 717fa17e 98523465 Author: Jean-Luc Vay Date: Wed Feb 8 18:09:47 2017 -0800 Merge branch 'master' of bitbucket.org:berkeleylab/picsar commit 717fa17ee720186901fcd1c2127e2213318f5ee7 Author: Jean-Luc Vay Date: Wed Feb 8 18:08:28 2017 -0800 Added subroutine addparticlesPXR that replaces addparticles and addpart in Species when finalize is called. python_libs/em3dsolverPXR.py commit 6fc36cd6393a9ca3f84e0ae96a2bd124a81dbccc Author: Jean-Luc Vay Date: Wed Feb 8 18:05:55 2017 -0800 Various fixes for injection. python_libs/LPA_PXR.py commit 98523465e7e4d5126b04611b462afb0e584058f3 Author: Remi Lehe Date: Wed Feb 8 09:18:51 2017 -0800 Generalize configure script This is in order to handle multiple MPI library directories configure commit 536bc502fa0ae50423a5a161f7391de34efa724a Merge: 138cd914 665a5dd1 Author: mathieu lobet Date: Tue Feb 7 04:21:32 2017 +0000 Merged in galilean_frame (pull request #54) Modification of GPSTDPXR to match with WARP commit 138cd914e96880245d5fa4bf45f0894a46ceda67 Merge: fe138381 d2c48d19 Author: mathieu lobet Date: Tue Feb 7 03:42:20 2017 +0000 Merged in Correction-field-gathering (pull request #55) Initialize values in modules.F90 commit 665a5dd19303513113534995d6b14e09519591a7 Author: Guillaume Blaclard Date: Mon Feb 6 15:22:26 2017 -0800 Modification of GPSTDPXR to match with WARP python_libs/GPSTDPXR.py commit d2c48d1949982fab447f00f04cdff1a4643d90a8 Author: mathieu_lobet Date: Mon Feb 6 10:21:41 2017 -0800 Initialize values in modules.F90 src/modules/modules.F90 commit fe1383817d39f2c806aeadf6364d7285ca3696ac Merge: 0c51c489 ba55594a Author: mathieu lobet Date: Mon Feb 6 18:17:34 2017 +0000 Merged in Correction-field-gathering (pull request #53) Change LVEC_fieldgathe for lvect in field_gathering_manager_3d.F90 commit ba55594aa4ee412aea70abba0637d90f8ba2b09d Author: mathieu_lobet Date: Mon Feb 6 10:16:31 2017 -0800 Change LVEC_fieldgathe for lvect in field_gathering_manager_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 0c51c489350509f345cbc29cabbb9d60ce264970 Merge: e29730c7 d065601d Author: mathieu lobet Date: Sun Feb 5 18:46:08 2017 +0000 Merged in picsar-opensource-refactoring (pull request #52) Picsar opensource refactoring commit d065601dc58215fe98657eb930eca4b2b03d4bce Author: mathieu_lobet Date: Sun Feb 5 09:40:49 2017 -0800 add #if !defined PICSAR_NO_ASSUMED_ALIGNMENT in esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 commit 781b6a271d5904e22f5a9d3dc3ff581b3521ea0d Author: mathieu_lobet Date: Sun Feb 5 09:37:45 2017 -0800 add #if !defined PICSAR_NO_ASSUMED_ALIGNMENT in charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 commit 4a1b8425c1a672408af1fb526f4af8585bae3e1f Author: mathieu_lobet Date: Sun Feb 5 09:29:34 2017 -0800 add #if !defined PICSAR_NO_ASSUMED_ALIGNMENT in src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit d200c14a1f7a2ca3ce3d63973fe03716d258c6d9 Author: mathieu_lobet Date: Sat Feb 4 09:32:33 2017 -0800 add #if !defined PICSAR_NO_ASSUMED_ALIGNMENT in boris_3d.F90 and vay_3d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 commit 8292092ab3a5155912e9d758499b0a977f14a18b Author: mathieu_lobet Date: Sat Feb 4 09:22:26 2017 -0800 add #if !defined PICSAR_NO_ASSUMED_ALIGNMENT in direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 commit d94fc5731ec3fd5d410e0c17d952cbb76e87dda4 Author: mathieu_lobet Date: Fri Feb 3 17:54:38 2017 -0800 add #if !defined PICSAR_NO_ASSUMED_ALIGNMENT in field_gathering_o1_3d.F90, field_gathering_o2_3d.F90 and field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 commit c7d69f1e2e2ad79d99247da4a77b0fb5b92d28a2 Author: mathieu_lobet Date: Fri Feb 3 16:42:12 2017 -0800 Correction in forthon_parser.py for #if !defined utils/forthon_parser/forthon_parser.py commit fded045500da1c4159bd1d754e8177a7ad2eed96 Author: mathieu_lobet Date: Fri Feb 3 16:07:57 2017 -0800 Add #if !defined PICSAR_NO_ASSUMED_ALIGNMENT in modules.F90 src/modules/modules.F90 commit cad03b4fbc9479fc1f173ea0e9dab483f60f4002 Author: mathieu_lobet Date: Fri Feb 3 15:48:19 2017 -0800 Remove useless USE omp_lib or put them in pragma in case no OpenMP src/boundary_conditions/particle_boundaries.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/housekeeping/load_balancing.F90 src/parallelization/mpi/mpi_routines.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/submain.F90 commit e29730c782bfd07dd5f9618c18640fb587488a8a Merge: 65051809 49d658fc Author: mathieu lobet Date: Fri Feb 3 21:29:24 2017 +0000 Merged in field-gathering-simd-private (pull request #51) Field gathering simd private commit 49d658fc4b8b0db3093eb04b7d814b58926fbeca Author: mathieu_lobet Date: Thu Feb 2 15:39:16 2017 -0800 Update subroutines in field_gathering_manager_3d.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 Makefile src/field_gathering/field_gathering_manager_3d.F90 commit 30007c4ec667e7edf60891f8cd74739778efaaba Author: mathieu_lobet Date: Thu Feb 2 15:19:20 2017 -0800 Update subroutines field_gathering_plus_particle_pusher src/particle_pushers/particle_pusher_manager_3d.F90 commit a9e1f9caa2f7231c6b614cc34db880107188960a Author: mathieu_lobet Date: Thu Feb 2 14:40:38 2017 -0800 Optimization in the new vectorized field gathering subtoutines src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 commit 828faae8c6ac59c16e23c5899610920c142291b9 Author: mathieu_lobet Date: Thu Feb 2 14:35:07 2017 -0800 Correction in previous subroutines + addition of geteb3d_energy_conserving_vecV4_2_2_2 Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 utils/subroutine_generators/write_gathering_routines_vect2_3d.py commit 5f971f3086408001284eadde6dea7500a1bb43ee Author: mathieu_lobet Date: Thu Feb 2 13:46:43 2017 -0800 Add geteb3d_energy_conserving_vecV3_3_3_3 to tile_field_gathering_3d_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 commit 1a848e2c28998ddad2e6a749a4eef98c334271a8 Author: mathieu_lobet Date: Thu Feb 2 12:22:59 2017 -0800 Update geteb3d_energy_conserving_vecV4_1_1_1 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 commit 5b66fe5cf8745376d4b41f1c4016269e636b0036 Author: mathieu_lobet Date: Thu Feb 2 12:15:38 2017 -0800 Add new vectorized field gathering subroutine for order 3: geteb3d_energy_conserving_vecV3_3_3_3 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 7fa56fc38edb9306c2723df995af67cd83f7ab1e Author: mathieu_lobet Date: Thu Feb 2 12:00:30 2017 -0800 Change geteb3d_energy_conserving_vec2_3_3_3 for geteb3d_energy_conserving_vecV2_3_3_3 Acceptance_testing/Gcov_tests/field_gathering_test.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit b325e54b2341145bfe3cec0907e7857dd2ddd51a Author: mathieu_lobet Date: Thu Feb 2 10:25:52 2017 -0800 Update of the Gcov tests Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 Makefile src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/field_gathering_manager_3d.F90 commit 9cec4f8346402f387c759ebf6580122c4ebaa861 Author: mathieu_lobet Date: Wed Feb 1 16:55:05 2017 -0800 Creation of geteb3d_energy_conserving_vecV4_1_1_1 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 commit 6505180962749ee80f16f625877cd8c3c0d9a216 Merge: 89d335de 9b7a66d8 Author: mathieu lobet Date: Wed Feb 1 21:49:57 2017 +0000 Merged in galilean (pull request #50) Bug correction commit 9b7a66d83b9f510a20840ff86fa8eb9b060e9815 Author: Guillaume Blaclard Date: Wed Feb 1 13:44:10 2017 -0800 Bug correction python_libs/em3dsolverPXR.py commit 89d335ded48a62aab9368582ec2ca94215b76fe5 Merge: afd4a8a7 ce8df3fa Author: mathieu lobet Date: Tue Jan 31 04:20:36 2017 +0000 Merged in warpx-maxwell-tiling (pull request #49) WarpX Tiling in Maxwell Solver commit ce8df3fa7469096808ba0835b0949347aad7c18e Author: Weiqun Zhang Date: Mon Jan 30 16:22:48 2017 -0800 fix another new bug src/field_solvers/Maxwell/yee_solver/warpx_yee.F90 commit 1d3d71513d99b3adf2aefef6b4d14f04f09c56b6 Author: Weiqun Zhang Date: Mon Jan 30 14:29:27 2017 -0800 fix bug in last commit src/field_solvers/Maxwell/yee_solver/warpx_yee.F90 commit 15b64182974134a8a1a65a3cae5c3bf1d27363f8 Author: Weiqun Zhang Date: Mon Jan 30 14:18:22 2017 -0800 WarpX version of Yee solver src/Make.package src/field_solvers/Maxwell/yee_solver/warpx_yee.F90 commit afd4a8a758e755f96afc55daab3dd432fb5d8345 Merge: 4f11db9d 54d8a144 Author: mathieu lobet Date: Mon Jan 30 17:01:18 2017 +0000 Merged in Particle-pusher-cache-misses (pull request #48) Particle pusher cache misses commit 54d8a144d1fe227f0e06c18b73888a93e222cab0 Merge: f63bb76f 4f11db9d Author: mathieu_lobet Date: Mon Jan 30 08:55:59 2017 -0800 Merge remote-tracking branch 'origin/master' into Particle-pusher-cache-misses commit 4f11db9d954f1e5c1b944e75434da0dc1b4001a6 Merge: 11cb545e 68ee3eb5 Author: mathieu lobet Date: Sun Jan 29 18:53:00 2017 +0000 Merged in galilean (pull request #47) Changement to include galilean frame in PXR commit f63bb76f3b1a5e0b52fc8bd2db177f2d95ae317e Author: mathieu_lobet Date: Sat Jan 28 13:22:57 2017 -0800 Add advisor profiling in makefile for cori1 Makefile commit 68ee3eb5f8d4d59f82ed1cb1bc8a423ae6724a66 Author: Guillaume Blaclard Date: Fri Jan 27 15:46:56 2017 -0800 Correction typo 2 python_libs/em3dsolverPXR.py commit 7d1e277ee22d946801937beec45a97ac3879f5c5 Author: Guillaume Blaclard Date: Fri Jan 27 13:59:55 2017 -0800 Correction of a typo python_libs/GPSTDPXR.py commit af7bafd2a108fe6fb9189411b83622a71570b1cd Author: Guillaume Blaclard Date: Fri Jan 27 11:36:09 2017 -0800 Changement to include galilean frame in PXR python_libs/GPSTDPXR.py python_libs/em3dsolverPXR.py commit 3aaad55cd9a33907e5875af43f936c4816be9c1a Merge: 2d12a2ea 11cb545e Author: mathieu_lobet Date: Fri Jan 27 09:28:23 2017 -0800 Merge remote-tracking branch 'origin/master' into Particle-pusher-cache-misses commit 11cb545e97db219bd6ba181ba469e8db130d4ba4 Merge: 87f1a15a 7dd3c61a Author: mathieu lobet Date: Fri Jan 27 17:26:53 2017 +0000 Merged in Picsar-profiling-2 (pull request #46) Correction in Makefile commit 7dd3c61adacf524d98807e70e15512b74c277281 Merge: 6754c8d7 87f1a15a Author: mathieu_lobet Date: Fri Jan 27 09:25:30 2017 -0800 Merge remote-tracking branch 'origin/master' into Picsar-profiling-2 commit 6754c8d7abe6e7739db59c5dff1cf45c33ad2ac3 Author: mathieu_lobet Date: Fri Jan 27 09:25:10 2017 -0800 Correction in Makefile Makefile commit 87f1a15a9a4d55d622e212f93789614fefecfe67 Merge: be5084d7 48f9debe Author: mathieu lobet Date: Wed Jan 25 23:03:51 2017 +0000 Merged in Picsar-profiling-2 (pull request #45) improve Makefile commit 48f9debe8ee321e48730473aea1b06a3ca8c677b Author: mathieu_lobet Date: Wed Jan 25 12:04:58 2017 -0800 Remove -qopt-streaming-stores auto in MODE=advisor for SYS=cori2 in the Makefile Makefile commit be5084d79c16fcfbeaaf28101ebdcc34b6391ce5 Merge: b7525136 25c61f16 Author: mathieu lobet Date: Wed Jan 25 19:39:36 2017 +0000 Merged in Picsar-profiling-2 (pull request #44) Picsar profiling 2 commit 25c61f16a4e30244dbbd6b0f28a42a4b2340fa19 Author: mathieu_lobet Date: Wed Jan 25 11:14:38 2017 -0800 Add Advisor and SDE mode in Makefile on cori2 Makefile commit ef06e596fe27aebc340677a79ca27a92eab15cf8 Author: mathieu_lobet Date: Wed Jan 25 10:14:13 2017 -0800 Add Vtune mode in Makefile on cori2 Makefile commit b75251360838e53592f1e351486f0b9d66dced48 Merge: 8712e7e2 2e2b1c3c Author: Henri VINCENTI Date: Tue Jan 24 15:48:25 2017 +0000 Merged in pxr_correct_weights (pull request #43) Corrected weight passing from WARP to PXR in em3dsolverPXR commit 2e2b1c3cc32815f87c591a17c3b47d5880881280 Author: Henri VINCENTI Date: Tue Jan 24 11:37:37 2017 +0100 Corrected weight passing from WARP to PXR in em3dsolverPXR python_libs/em3dsolverPXR.py commit 2d12a2eac7b4550da8c9c6e1d7dcdd4757d90f8f Merge: ae523f0f 144df609 Author: mathieu_lobet Date: Fri Jan 20 11:14:17 2017 -0800 Fix conflicts in Vay pusher vay_3d.F90 commit ae523f0ff35bf20508d00a827069a243fa4af613 Merge: 6eead587 8712e7e2 Author: mathieu_lobet Date: Fri Jan 20 11:12:46 2017 -0800 Merge with master and solve conflicts due to extra spaces commit 8712e7e2c178ba9d3b1e2356b55812dca9fa1116 Merge: 4265152a bdd50627 Author: mathieu lobet Date: Fri Jan 20 19:08:21 2017 +0000 Merged in improve-makefile (pull request #42) Update application name in makefile commit bdd5062773ccb8779317a046d2d1907270695267 Author: mathieu_lobet Date: Fri Jan 20 09:59:36 2017 -0800 Update app name in makefile Makefile commit 144df6093f614654f473a6051660c30aed50fce6 Author: mathieu_lobet Date: Fri Jan 20 09:56:59 2017 -0800 intent(inout) for Vay pusher src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 commit 4265152aac77beada5ab0ceda78c1d86a2bf88f3 Merge: ef7eae3b 3cb86bdb Author: Remi Lehe Date: Thu Jan 19 21:14:43 2017 +0000 Merged in pxr_clean_laser_mode (pull request #41) Did some cleaning in em3dsolverPXR.py following cleaning of laser_mode in WARP commit 3cb86bdbacce21360127a9c94e312c89f83fb979 Author: Henri VINCENTI Date: Thu Jan 19 18:31:31 2017 +0100 Did some cleaning in em3dsolverPXR.py following cleaning of laser_mode in WARP python_libs/em3dsolverPXR.py commit ef7eae3b77a9ac9479051e7991aa9c874de51b9b Merge: c9f898d9 5b659f9d Author: Henri VINCENTI Date: Thu Jan 19 11:01:33 2017 +0000 Merged in pxr_pid (pull request #39) This PR adds the pid array needed when tracking additional commit 5b659f9d012c01a1a838beef8d6a90b46625f09f Author: Henri VINCENTI Date: Thu Jan 19 11:06:58 2017 +0100 Corrected remaining conflict statements Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 commit dd46a315a5ed8be11b7982b1e0dccb7d07888aac Merge: 5311888b b3602e60 Author: Henri VINCENTI Date: Thu Jan 19 10:37:15 2017 +0100 Merge branch 'pxr_pid' of https://bitbucket.org/berkeleylab/picsar into pxr_pid Conflicts: Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 python_libs/em3dsolverPXR.py src/boundary_conditions/particle_boundaries.F90 commit 5311888bb26a0a9f0355e0222818fcee890277ec Author: Henri VINCENTI Date: Thu Jan 19 10:17:18 2017 +0100 Corrected bug in mpi+tile exchange routines (some buffers were not allocated with proper size including npid) Corrected syntax bug in accepetance testing Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 src/boundary.F90 commit c9f898d9b66f3ffca0e4d5a1639aca731e23548e Merge: b2853f4e 2f5f0735 Author: Remi Lehe Date: Wed Jan 18 14:45:54 2017 -0800 Merged in trailing_spaces (pull request #40) Remove empty line and trailing spaces commit b3602e608a2044f0169c7a370d05d5ebcbaf18a2 Author: Remi Lehe Date: Wed Jan 18 10:25:20 2017 -0800 Solving conflicts with particle pid and new version fo picsar Makefile python_libs/em3dsolverPXR.py src/boundary_conditions/particle_boundaries.F90 src/housekeeping/load_balancing.F90 src/modules/modules.F90 src/parallelization/tiling/tiling.F90 commit 2f5f0735d60ef79ff782035a2cb24679f332ca89 Author: Remi Lehe Date: Wed Jan 18 10:14:24 2017 -0800 Removed trailing spaces in python files python_libs/GPSTDPXR.py python_libs/LPA_PXR.py python_libs/em3dsolverPXR.py commit 13753ed8a227fce9315e977c82c7e948e554b907 Author: Remi Lehe Date: Wed Jan 18 10:08:16 2017 -0800 Remove empty line and trailing spaces There is not change to the code itself src/Make.package src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags/diags.F90 src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/karkainnen_solver/karkainnen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 src/housekeeping/load_balancing.F90 src/housekeeping/sorting.F90 src/initilization/control_file.F90 src/ios/simple_io.F90 src/main.F90 src/modules/modules.F90 src/parallelization/mpi/mpi_derived_types.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 src/profiling/api_fortran_itt.c src/profiling/api_fortran_sde.c src/profiling/itt_fortran.F90 src/profiling/sde_fortran.F90 src/submain.F90 commit b2853f4e462b6431298c5955b0600fdd094f5fb5 Merge: b4ff1378 3cb53034 Author: Remi Lehe Date: Wed Jan 18 09:56:21 2017 -0800 Merged in profiling-refactoring (pull request #38) Profiling refactoring commit b4ff1378be6d903e29cabbb48a7b56ae9ed5d3d5 Merge: e1965512 1f9c15ac Author: Remi Lehe Date: Wed Jan 18 09:55:56 2017 -0800 Merged in field-gathering-refactoring (pull request #35) Field gathering refactoring commit e196551258422496b911b914eac203ee30f95b9f Merge: 1292e24e b5a5e53a Author: Remi Lehe Date: Wed Jan 18 09:47:54 2017 -0800 Merged in housekeeping-refactoring (pull request #34) Housekeeping folder for sorting and load balancing commit af3e732c903b81889fe47c30b472d5b85f5164c9 Author: Henri VINCENTI Date: Wed Jan 18 17:56:22 2017 +0100 This PR adds the pid array needed when tracking additional quantities in warp (e.g particle ids etc). Before, PXR only included particle weight . Now PXR includes arbitrary npid. Makefile python_libs/em3dsolverPXR.py src/boundary.F90 src/load_balancing.F90 src/modules/modules.F90 src/parallelization/tiling/tiling.F90 commit 1292e24e90a2d4cc667511ae3f03a2d1a870652b Merge: 2c13c3ff 952afb05 Author: Henri VINCENTI Date: Wed Jan 18 12:44:50 2017 +0100 Merged in parallelization-refactoring (pull request #32) Parallelization refactoring commit 2c13c3ff2a0adc20ef1d3eae32b4339ca9b33c9b Merge: 32a1e5b8 dfc137d8 Author: Henri VINCENTI Date: Wed Jan 18 12:44:28 2017 +0100 Merged in init-modules-refactoring (pull request #31) Init modules refactoring commit 32a1e5b8215a4bd060bc665b171eda0ea0cd717e Merge: 667d8e93 4a9699e4 Author: Henri VINCENTI Date: Wed Jan 18 12:43:50 2017 +0100 Merged in particle-deposition-refactoring (pull request #30) Particle deposition refactoring commit 667d8e930d3da62eefdd2e853c700db0aabcb7c4 Merge: a95a619e 761c20c0 Author: Henri VINCENTI Date: Wed Jan 18 12:42:30 2017 +0100 Merged in particle-pusher-refactoring (pull request #29) Particle pusher refactoring commit a95a619e29bc60802b7dfde935040b463f6efddb Merge: defa8555 26da819f Author: Henri VINCENTI Date: Wed Jan 18 12:39:58 2017 +0100 Merged in Maxwell-solver-refactoring (pull request #28) Maxwell solver refactoring commit 6eead587a2679fe80ae3af45542ae59db87afac5 Author: mathieu_lobet Date: Mon Jan 16 20:44:45 2017 -0800 Addition of intent(inout) on input/output parameters of particle_pusher_manager_3d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit c2ca1b8c2a2aab2d6503c1f43ed581abfda8f507 Author: mathieu_lobet Date: Mon Jan 16 20:17:17 2017 -0800 Creation of the subroutine pxr_boris_push_u_3d_block that performs the momentum push similar to pxr_boris_push_u_3d but by block. src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 commit e9b654ea2c0605f6ef7143c3f896207153a97582 Author: mathieu_lobet Date: Mon Jan 16 20:07:58 2017 -0800 Put Makefile and tile_particle_push_3d_test.F90 as before previous commit. This has been modified for test purposes. Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Makefile commit d489756ed147243cc6b8e77c5082ce88c289e01e Author: mathieu_lobet Date: Mon Jan 16 20:05:38 2017 -0800 Creation of the subroutine pxr_boris_push_u_3d in boris_3d.F90 that can push forward momenta in a single particle loop. Addition of intent(inout) for many input/ouput parameters related to the particle pusher Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Makefile src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 commit bb455fe49c454140cc67dffa8c935ffae7b95e2d Merge: defa8555 3cb53034 Author: mathieu_lobet Date: Mon Jan 16 15:16:49 2017 -0800 Merge branch 'profiling-refactoring' into Particle-pusher-cache-misses commit 3cb53034da49a2337d511a6bbf88e6cb58b96b1f Merge: cf44fbcd 5854eb8b Author: mathieu_lobet Date: Sun Jan 15 17:34:23 2017 -0800 Merge branch 'profiling-refactoring' of https://bitbucket.org/berkeleylab/picsar into profiling-refactoring commit cf44fbcd16f529c26cccf20ec6ea98556db85674 Author: mathieu_lobet Date: Sun Jan 15 17:33:51 2017 -0800 Correction in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit 5854eb8bc28ea7e978ced8bf94ec393faac56248 Author: mathieu_lobet Date: Sun Jan 15 17:31:22 2017 -0800 Correction in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit 46cb879639ff4c7bf701bebb6d9ddd416aadf852 Author: mathieu_lobet Date: Fri Jan 13 16:00:44 2017 -0800 Correction Make.package for WARPX src/Make.package commit 738dcf084410737bf7e8c4945b157f1fbd685341 Author: mathieu_lobet Date: Fri Jan 13 10:13:23 2017 -0800 Correction in Make.package for WARPX src/Make.package commit b4dbfb1a9ed3442c2417e1aee83fb4a223e2518a Author: mathieu_lobet Date: Fri Jan 13 09:38:28 2017 -0800 Update Make.package for WARPX src/Make.package commit defa8555d57792878ffe355a84bc4b35a17a885a Merge: a3d24c81 99106cbd Author: Henri VINCENTI Date: Fri Jan 13 11:39:10 2017 +0100 Merged in Python-folder-refactoring (pull request #27) Python folder refactoring commit 9c1e3b1d5f46836a75b8ee16f67b71e6c36b3acc Author: mathieu_lobet Date: Thu Jan 12 17:11:31 2017 -0800 Refatcoring of the profiling sibroutines by the creation of a folder profiling. Update Makefile and Makefile_profiling. Makefile Makefile_profiling src/profiling/api_fortran_itt.c src/profiling/api_fortran_sde.c src/profiling/itt_fortran.F90 src/profiling/sde_fortran.F90 commit aa798254ff3523155e6b303fabead66540624af4 Author: mathieu_lobet Date: Thu Jan 12 17:04:37 2017 -0800 Creation of the folders diags and ios. Update of the Makefile and the forthon parser. Makefile src/diags/diags.F90 src/ios/simple_io.F90 utils/forthon_parser/forthon_parser.py commit 9b31b4b221270f24dbd3f642ec31069fa81288df Author: mathieu_lobet Date: Thu Jan 12 16:54:23 2017 -0800 Refactoring of the boundary conditions with the creation fo the folder boundary_conditions. The file boundary.F90 has been divided into 2 files, one for the field, the other for the particles. The test tile_mpi_part_com_test.F90 has been updated as well as the Makefile and the Forthon parser. Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 Makefile src/boundary_conditions/field_boundaries.F90 src/boundary_conditions/particle_boundaries.F90 src/diags.F90 src/submain.F90 utils/forthon_parser/forthon_parser.py commit 1f9c15ac5ddd8554b17c10458af379273fd2947a Author: mathieu_lobet Date: Thu Jan 12 16:25:02 2017 -0800 Correction parser for field gathering utils/forthon_parser/forthon_parser.py commit da2ad8aacceebec3403a605acb365c7faf722561 Author: mathieu_lobet Date: Thu Jan 12 16:22:21 2017 -0800 Update file particle_pusher_manager_2d.F90. Remove particles_push_2d.F90. src/particle_pushers/particle_pusher_manager_2d.F90 src/particles_push_2d.F90 commit 265b68bb534e9c19c4ed64401f480897fff3b992 Author: mathieu_lobet Date: Thu Jan 12 16:16:41 2017 -0800 Refactoring of the field gathering: creation of a new folder field gathering with subfiles for the different orders and dimensions. Update of the Makefile Update of Forthon parser Makefile src/field_gathering/energy_conserving/field_gathering_o1_2d.F90 src/field_gathering/energy_conserving/field_gathering_o1_3d.F90 src/field_gathering/energy_conserving/field_gathering_o2_2d.F90 src/field_gathering/energy_conserving/field_gathering_o2_3d.F90 src/field_gathering/energy_conserving/field_gathering_o3_2d.F90 src/field_gathering/energy_conserving/field_gathering_o3_3d.F90 src/field_gathering/energy_conserving/field_gathering_on_2d.F90 src/field_gathering/energy_conserving/field_gathering_on_3d.F90 src/field_gathering/field_gathering_manager_2d.F90 src/field_gathering/field_gathering_manager_3d.F90 utils/forthon_parser/forthon_parser.py commit b5a5e53aaadfce5aa4021c06ebbe82b3c4513c9c Author: mathieu_lobet Date: Thu Jan 12 15:30:35 2017 -0800 Creation of the folder housekeeping for sorting.F90 and load_balancing.F90. Update of the Makefile and the Forthon parser. Makefile src/housekeeping/load_balancing.F90 src/housekeeping/sorting.F90 utils/forthon_parser/forthon_parser.py commit 952afb05279bd3dde50f827567c5cd6ce47711f0 Author: mathieu_lobet Date: Thu Jan 12 15:17:16 2017 -0800 Creation of the folder parallelization. It contains the files tiling.F90, mpi_routines.F90 and mpi_derived_types.F90. The Makefile and the Forthon parser has been updated. Makefile src/parallelization/mpi/mpi_derived_types.F90 src/parallelization/mpi/mpi_routines.F90 src/parallelization/tiling/tiling.F90 utils/forthon_parser/forthon_parser.py commit dfc137d8fd447c4366fb4e0fbac32ebb6b709a65 Author: mathieu_lobet Date: Thu Jan 12 15:00:12 2017 -0800 Creation of a folder modules and initilization. Makefile and Forthor parser are updated in consequence. Makefile src/initilization/control_file.F90 src/modules/modules.F90 utils/forthon_parser/forthon_parser.py commit 417c78c05675232f039ea81a073885f7b17d1d1e Merge: a3d24c81 4a9699e4 Author: mathieu_lobet Date: Thu Jan 12 14:49:48 2017 -0800 Merge branch 'particle-deposition-refactoring' into init-modules-refactoring commit 4a9699e4547094ab0fb38527af8094e838b9f639 Author: mathieu_lobet Date: Thu Jan 12 14:34:26 2017 -0800 Correction mistake .o in forthon parser utils/forthon_parser/forthon_parser.py commit 29b02bbcdf36d88d2512964a8b970f0e08c10e45 Author: mathieu_lobet Date: Thu Jan 12 14:31:48 2017 -0800 Remove current_deposition.F90 in forthon_parser utils/forthon_parser/forthon_parser.py commit b3b850750da43d02a18c1ab30e84b1e2be9b166b Author: mathieu_lobet Date: Thu Jan 12 14:31:03 2017 -0800 Update forthon parser for current deposition utils/forthon_parser/forthon_parser.py commit 926247e5e9f57abd0cd514e325e9baeb7632ac60 Author: mathieu_lobet Date: Thu Jan 12 13:02:40 2017 -0800 Update Makefile for current deposition Makefile commit e625eee17f38afed98a998a71aede73c845cff7e Author: mathieu_lobet Date: Thu Jan 12 12:34:16 2017 -0800 Refactoring of the current deposition with creation of the folder particle_deposition/current_deposition/ src/current_deposition.F90 src/particle_deposition/current_deposition/current_deposition_manager_2d.F90 src/particle_deposition/current_deposition/current_deposition_manager_3d.F90 src/particle_deposition/current_deposition/direct/direct_current_deposition_3d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_2d.F90 src/particle_deposition/current_deposition/esirkepov/esirkepov_3d.F90 commit a3d24c816b35970f5c5a57f4da412f1078e4bfd2 Merge: 7e575a5e e04a97b5 Author: Henri VINCENTI Date: Thu Jan 12 21:09:58 2017 +0100 Merged in examples-refactoring (pull request #26) Examples refactoring commit cf12aa023068cca3b5f7126d980baf08cf365552 Author: mathieu_lobet Date: Thu Jan 12 10:42:31 2017 -0800 Update Makefile for charge deposition Update forthon parser for charge deposition Makefile utils/forthon_parser/forthon_parser.py commit 7e575a5e9613feb39a2a2923feaf9157ca0bb5ac Merge: 07392180 27894169 Author: Henri VINCENTI Date: Thu Jan 12 19:40:47 2017 +0100 Merged in Installation-doc-refactoring (pull request #25) Installation doc refactoring commit eaf172525b152480d5124de56198d792cce6f54b Author: mathieu_lobet Date: Thu Jan 12 10:27:28 2017 -0800 Update .gitignore to ignore .o files in all folders of src .gitignore commit 04ef613a5a905b4a4a1b2831914752f2ce9835a8 Merge: f005721f 761c20c0 Author: mathieu_lobet Date: Thu Jan 12 10:24:42 2017 -0800 Merge branch 'particle-pusher-refactoring' into particle-deposition-refactoring commit f005721fd88867a107f4cca585b529809554a87e Author: mathieu_lobet Date: Thu Jan 12 10:17:21 2017 -0800 Refactoring of the charge deposition with the creation of new folders: particle_deposition and charge_deposition, and new files from the original file charge_deposition.f90. Correction comments in modules.F90 src/modules.F90 src/particle_deposition/charge_deposition/charge_deposition_2d.F90 src/particle_deposition/charge_deposition/charge_deposition_3d.F90 src/particle_deposition/charge_deposition/charge_deposition_manager.F90 commit 761c20c048cb2e493bb600e07e44682418a36150 Author: mathieu_lobet Date: Thu Jan 12 09:47:52 2017 -0800 Correction in forthon parser for particle pusher utils/forthon_parser/forthon_parser.py commit 7d0c56dff11ea08983db014a7c6c6c42ffb5ff5d Author: mathieu_lobet Date: Thu Jan 12 09:41:21 2017 -0800 Refactoring of the particle pusher: creation of the folder particle_pushers Update of the Doxygen file in consequence for the new files Update of the makefile Update of the forthon parser Doxygen/Doxyfile Makefile src/particle_pushers/boris_pusher/boris_2d.F90 src/particle_pushers/boris_pusher/boris_3d.F90 src/particle_pushers/particle_pusher_manager_2d.F90 src/particle_pushers/particle_pusher_manager_3d.F90 src/particle_pushers/vay_pusher/vay_3d.F90 src/particles_push_2d.F90 utils/forthon_parser/forthon_parser.py utils/postprocessing/forthon_parser.py commit 26da819f0996b16cec9a06be480ff9c40c845664 Author: mathieu_lobet Date: Wed Jan 11 17:33:12 2017 -0800 Small correction in Makefile_Forthon.in for test_drifted_plasma_3d.py Makefile_Forthon.in commit cb8e8ec299c2b602ce6d1e231e22a28e5df19229 Author: mathieu_lobet Date: Wed Jan 11 17:20:27 2017 -0800 In this commit, the maxwell.F90 file has been segregated into different smaller files maxwell_solver_manager.F90, yee.f90, karkainnen.F90. The source structure has been updated according to the repository refactoring plan with a new folder field_solvers. Makefile src/field_solvers/Maxwell/GPSTD_solver/GPSTD.F90 src/field_solvers/Maxwell/karkainnen_solver/karkainnen.F90 src/field_solvers/Maxwell/maxwell_solver_manager.F90 src/field_solvers/Maxwell/yee_solver/yee.F90 utils/forthon_parser/forthon_parser.py commit 99106cbd27206e245a188f0d87352ebd08a003fb Merge: 75d67db5 e04a97b5 Author: mathieu_lobet Date: Wed Jan 11 16:16:59 2017 -0800 Merge branch 'examples-refactoring' into Python-folder-refactoring commit e04a97b59e2e41974267da5c2e889481f621c48b Author: mathieu_lobet Date: Wed Jan 11 15:53:21 2017 -0800 Update test_langmuir_wave.py according to the number of iteration of langmuir_wave.pixr Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py examples/example_decks_fortran/langmuir_wave.pixr commit 75d67db52ed9758d1927df070905a9fd19eaba72 Author: mathieu_lobet Date: Wed Jan 11 15:30:23 2017 -0800 Recreate forthon_parser.py utils/forthon_parser/forthon_parser.py commit 076a70a057867a4f499e9a2734f71cc08d41485e Author: mathieu_lobet Date: Wed Jan 11 15:21:31 2017 -0800 Update Makefile_Forthon.in for forthon parser Makefile_Forthon.in commit 499bfd44407f2490daae8aab36e4c6736aa414bb Author: mathieu_lobet Date: Wed Jan 11 15:16:20 2017 -0800 Update export in shippable.yml shippable.yml commit 44489f3297050d63342f984a85152ec6287acc71 Merge: 13e9bdf8 72a2f9cc Author: mathieu_lobet Date: Wed Jan 11 15:12:50 2017 -0800 Merge branch 'examples-refactoring' into Python-folder-refactoring commit 13e9bdf87f3b62c8643e573555ced621ae1b3935 Author: mathieu_lobet Date: Wed Jan 11 15:10:15 2017 -0800 New structure for utils postproc_python_script/__pycache__/test_divergence_picssar.cpython-27-PYTEST.pyc utils/postprocessing/Field.py utils/postprocessing/PyLoadArrayPicsar.py utils/postprocessing/check_divE=rho.py utils/postprocessing/forthon_parser.py utils/postprocessing/plot_field_picsar.py utils/subroutine_generators/write_current_dep_esirkepov_2d.py utils/subroutine_generators/write_current_dep_esirkepov_3d.py utils/subroutine_generators/write_current_dep_esirkepov_vect_3d.py utils/subroutine_generators/write_gathering_routines_2d.py utils/subroutine_generators/write_gathering_routines_blockvect2_3d.py utils/subroutine_generators/write_gathering_routines_vec2_2d.py utils/subroutine_generators/write_gathering_routines_vec_3d.py utils/subroutine_generators/write_gathering_routines_vect2_3d.py commit 72a2f9cc72b2ff6de93bbb1bc8dc7698ed7a3bab Author: mathieu_lobet Date: Wed Jan 11 14:30:03 2017 -0800 Active Langmuir wave test in shippable. Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr examples/example_decks_fortran/langmuir_wave.pixr shippable.yml commit 16b45b3952138f1178621453fce9a3befae2cbd0 Author: mathieu_lobet Date: Wed Jan 11 14:17:27 2017 -0800 Update of README.md for python installation instructions README.md commit 5f7b8ce20c595b867cea08d78034473d640255a8 Author: mathieu_lobet Date: Wed Jan 11 13:42:58 2017 -0800 Small correction in shippable.yml for examples shippable.yml commit a5ee3c18096dcc728c421146690e1f8baa71ddc1 Author: mathieu_lobet Date: Wed Jan 11 13:20:54 2017 -0800 Comments in Makefile_Forthon.in Makefile_Forthon.in commit 840bcc2a7c4a2f47325aa1afe395baa678808fe8 Author: mathieu_lobet Date: Wed Jan 11 12:16:08 2017 -0800 Update Python scripts for the Fortran tests Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py commit 256a6ea05b324b89c49d034d00858b3f59ffa9ea Author: mathieu_lobet Date: Wed Jan 11 12:12:05 2017 -0800 Update Makefile_Forthon.in for examples Makefile_Forthon.in commit 3dc6306b9edabf89d405652cd1fa0970dbfbd001 Merge: 49c225b3 27894169 Author: mathieu_lobet Date: Wed Jan 11 12:06:21 2017 -0800 Update REAME.md for examples commit 49c225b30567e525f4ec0df2fc8fbf7b05073984 Author: mathieu_lobet Date: Wed Jan 11 12:04:25 2017 -0800 Move example_decks_fortran and example_scripts_python in examples examples/example_decks_fortran/drifted_plasma.pixr examples/example_decks_fortran/homogeneous_plasma.pixr examples/example_decks_fortran/langmuir_wave.pixr examples/example_decks_fortran/test.pixr examples/example_scripts_python/HHG_ROM.py examples/example_scripts_python/HHG_ROM_CORI.py examples/example_scripts_python/em3dsolverPXR.pyc examples/example_scripts_python/homogeneous_plasma.py examples/example_scripts_python/ion_acceleration_2d.py examples/example_scripts_python/test.py examples/example_scripts_python/test_Langmuir_wave_3d.py examples/example_scripts_python/test_drifted_plasmas_3d.py examples/example_scripts_python/test_laser.py examples/example_scripts_python/test_load_balancing.py examples/example_scripts_python/testwwarp.py commit 278941691ef655980a7134284847ea7148b01b7c Merge: ea6e14d9 07392180 Author: mathieu_lobet Date: Wed Jan 11 11:43:51 2017 -0800 Merge remote-tracking branch 'origin/master' into Installation-doc-refactoring commit ea6e14d9ed42c2c5320db9a8e55edddd0033fb44 Author: mathieu_lobet Date: Wed Jan 11 11:42:15 2017 -0800 Creation of the Python installation instructions for MIRA INSTALL_PYTHON_MIRA.md Installation_doc/Python/INSTALL_PYTHON_MIRA.md commit d75e10dd450e527bbfbf39e60ef4445a2c4942c2 Author: mathieu_lobet Date: Wed Jan 11 11:41:31 2017 -0800 Creation of the Python installation instructions for LINUX INSTALL_PYTHON_LINUX.md Installation_doc/Python/INSTALL_PYTHON.md Installation_doc/Python/INSTALL_PYTHON_CORI.md Installation_doc/Python/INSTALL_PYTHON_LINUX.md commit e5e3f83671878911bf2243b5eb8b2543f3fd9e0d Author: mathieu_lobet Date: Wed Jan 11 11:11:23 2017 -0800 Creation of the Python installation instructions for MacOS INSTALL_PYTHON_MACOS.md Installation_doc/Python/INSTALL_PYTHON_MACOS.md commit 7ba56631ab15b53db72cb3e1985d36fb5cf0b659 Author: mathieu_lobet Date: Wed Jan 11 11:10:17 2017 -0800 Creation of the Python installation instruction for Edison INSTALL_PYTHON_EDISON.md Installation_doc/Python/INSTALL_PYTHON_EDISON.md Makefile_Forthon.in commit 073921803bf4cf99cbb6f68548d0fe818400a019 Merge: 9eb0eb74 9e9e6e62 Author: Remi Lehe Date: Wed Jan 11 10:08:57 2017 -0800 Merged in open-source-license (pull request #24) Open source license commit 9eb0eb74e267456247d5599044816675305b06e2 Author: Henri VINCENTI Date: Wed Jan 11 19:02:43 2017 +0100 Removed deprecated l_staggered_a_la_brendan python_libs/em3dsolverPXR.py commit e0f6568165c5813eef45f32e97613d8a147849d5 Merge: e9c3d2a1 66c50a01 Author: mathieu_lobet Date: Wed Jan 11 09:52:24 2017 -0800 Merge branch 'repo-structure-refactoring' into Installation-doc-refactoring commit 66c50a01bdd998380157bcf5ba1c008e4a376866 Author: mathieu_lobet Date: Wed Jan 11 09:49:04 2017 -0800 Creation of INSTALL_FORTRAN_EDISON.md, update of the other installation documentations for Fortran Installation_doc/Fortran/INSTALL_FORTRAN_CORI1.md Installation_doc/Fortran/INSTALL_FORTRAN_CORI2.md Installation_doc/Fortran/INSTALL_FORTRAN_EDISON.md Installation_doc/Fortran/INSTALL_FORTRAN_LINUX.md Installation_doc/Fortran/INSTALL_FORTRAN_MACOS.md commit 5f201af5f3b069848ced13eef7bb16afe05181b4 Author: mathieu_lobet Date: Tue Jan 10 18:33:04 2017 -0800 Creation of the instruction file INSTALL_FORTRAN_CORI1.md and update of INSTALL_FORTRAN_CORI2.md Installation_doc/Fortran/INSTALL_FORTRAN_CORI1.md Installation_doc/Fortran/INSTALL_FORTRAN_CORI2.md commit e9c3d2a14df205ccd130f1500c4794a99607fcea Merge: 14e2dbc7 37bd3ae1 Author: Remi Lehe Date: Tue Jan 10 18:02:10 2017 -0800 Merged in pxr-comments-and-doc (pull request #23) Pxr comments and doc commit 4138bce94671ec5b47706d43bc9a7f883cb06ca7 Author: mathieu_lobet Date: Tue Jan 10 18:01:06 2017 -0800 Creation of INSTALL_FORTRAN_LINUX.md. Installation_doc/Fortran/INSTALL_FORTRAN_LINUX.md commit 684129129a0f2afa9e184dbf9a089f7f991399d0 Author: mathieu_lobet Date: Tue Jan 10 17:13:18 2017 -0800 Update Fortran installation doc for MacOS. Create the Fortran installation doc for Cori Phase II. Installation_doc/Fortran/INSTALL_FORTRAN_CORI2.md Installation_doc/Fortran/INSTALL_FORTRAN_MACOS.md commit 4b53ac58415a3b7262c854b4e157280fb2b27337 Merge: ee32d2ed 9e9e6e62 Author: mathieu_lobet Date: Tue Jan 10 16:31:33 2017 -0800 Merge branch 'open-source-license' into repo-structure-refactoring Improvement of README.md commit 9e9e6e62236b2438fd7a145eb1fa33e6e5586b66 Author: mathieu_lobet Date: Tue Jan 10 16:10:46 2017 -0800 Remove non ascii character and replace it by " in all python files. Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py postproc_python_script/Field.py postproc_python_script/PyLoadArrayPicsar.py postproc_python_script/check_divE=rho.py postproc_python_script/plot_field_picsar.py python_libs/GPSTDPXR.py python_libs/LPA_PXR.py python_libs/em3dsolverPXR.py utils/forthon_parser.py commit ee32d2ed398d088d0e8bf685cf82f4802f234351 Author: mathieu_lobet Date: Tue Jan 10 16:06:20 2017 -0800 Creation of new folders for the installation documentation. Creation of a file INSTALL_FORTRAN_MACOS.md and creation of the doc for MacOs Creation of a file INSTALL_FORTRAN_CORI2 Documentation.html Installation_doc/Fortran/INSTALL_FORTRAN_CORI2.md Installation_doc/Fortran/INSTALL_FORTRAN_MACOS.md Installation_doc/Python/INSTALL_PYTHON.md commit a75f3e91261d4ce331f6879261e94d16353a3c21 Author: mathieu_lobet Date: Tue Jan 10 15:11:44 2017 -0800 Correction description in test_plasma_drift.py Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py commit 0997f0579b6e331a96356f7a9aa14a5eae85fc76 Author: mathieu_lobet Date: Tue Jan 10 15:09:15 2017 -0800 Update of all Fortran and script files with the Copyright notice. Indentation corrections. New comments for Doxygen. Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_3d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/rho_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 postproc_python_script/Field.py postproc_python_script/PyLoadArrayPicsar.py postproc_python_script/check_divE=rho.py postproc_python_script/plot_field_picsar.py python_libs/GPSTDPXR.py python_libs/LPA_PXR.py python_libs/em3dsolverPXR.py src/GPSTD.F90 src/api_fortran_itt.c src/api_fortran_sde.c src/boundary.F90 src/charge_deposition.F90 src/control_file.F90 src/current_deposition.F90 src/current_deposition_2d.F90 src/diags.F90 src/field_gathering_2d.F90 src/field_gathering_3d_o1.F90 src/field_gathering_3d_o2.F90 src/field_gathering_3d_o3.F90 src/itt_fortran.F90 src/load_balancing.F90 src/main.F90 src/maxwell.F90 src/modules.F90 src/mpi_derived_types.F90 src/mpi_routines.F90 src/particles_push.F90 src/particles_push_2d.F90 src/sde_fortran.F90 src/simple_io.F90 src/sorting.F90 src/submain.F90 src/tiling.F90 utils/forthon_parser.py commit 7b794c2d69af09ac83856a25fccae9164fde7ab4 Author: mathieu_lobet Date: Mon Jan 9 19:14:47 2017 -0800 Minor comment correction in field_gathering.F90. Creation of the license file license.txt for the open-source release. license.txt src/field_gathering.F90 commit 37bd3ae12697df5ffc8ff59fef1f95d9bf55a011 Author: mathieu_lobet Date: Mon Jan 9 15:30:37 2017 -0800 Comments for Doxygen and indentation in submain.F90 src/submain.F90 commit 5c70fc1c8880520dcdb5a20daf2bd007f8bdab40 Author: mathieu_lobet Date: Mon Jan 9 15:08:54 2017 -0800 Comments for Doxygen in simple_io.F90 src/simple_io.F90 commit bba5d5edb3cbea69c1963c3c193720edd64e04ac Author: mathieu_lobet Date: Mon Jan 9 13:44:00 2017 -0800 New comments for Doxygen in sde_fortran.F90. src/sde_fortran.F90 commit 0bc75444ee2c6c68e64d8fb910dde730e917fc83 Author: mathieu_lobet Date: Mon Jan 9 13:05:22 2017 -0800 Small correction in particles_push.F90. New comments for Doxygen in particle_push_2d.f90. src/particles_push.F90 src/particles_push_2d.F90 commit 72c69a88fa317aeb363ac06fbe6f151c502bf5bd Author: mathieu_lobet Date: Mon Jan 9 12:53:25 2017 -0800 Correction few mistakes in mpi_routines.F90. New comments and function descriptions for Doxygen in mpi_derived_types.F90. src/mpi_derived_types.F90 src/mpi_routines.F90 commit e70259b912e0449b9c80d2ede07e7e5ccd834fe6 Merge: 79207341 14e2dbc7 Author: mathieu_lobet Date: Mon Jan 9 10:26:06 2017 -0800 Merge remote-tracking branch 'origin/master' into pxr-comments-and-doc commit 7920734163b1ee6b731c6d9472b9f6b5e2708b88 Author: mathieu_lobet Date: Mon Jan 9 10:22:28 2017 -0800 This commit includes new comments in modules.F90. Almost all variables and parameters now have a short description of its purpose compatible with Doxygen. Some useless parameters have been removed. Indentation has been improved in mpi_routines.F90 with addition subroutine descriptions compatible with Doxygen. src/modules.F90 src/mpi_routines.F90 commit a9410f9d8eb6630974c3c372dfab83e68e6e5f4b Author: mathieu_lobet Date: Sun Jan 8 18:14:59 2017 -0800 This commit includes many new comments in modules.F90 for Doxygen. The module timing has also been removed and the files for the current deposition and the particle pusher accordingly updated. src/current_deposition.F90 src/current_deposition_2d.F90 src/modules.F90 src/particles_push.F90 commit 14e2dbc7b322472c177897bf6c9cf2825944dc63 Author: Henri VINCENTI Date: Fri Jan 6 17:56:36 2017 +0100 Updated install mira doc INSTALL_PYTHON.md commit 3d30b840acc748d1ce09e08326c13409c25fc150 Author: Henri VINCENTI Date: Fri Jan 6 17:55:02 2017 +0100 Added install instructions for python install on MIRA INSTALL_PYTHON.md commit 07eba500301cfeee79c17f9df45f89c6c3ec0350 Author: mathieu_lobet Date: Fri Dec 23 17:39:15 2016 -0800 Few changes in main.F90 for the Comments src/main.F90 commit d71071e2578e6ef6410bdb407ab309e8dd54610a Author: mathieu_lobet Date: Fri Dec 23 17:26:21 2016 -0800 Comments for Doxygen in load_balancing.F90 src/load_balancing.F90 commit 2b2e0f883466828d1ec1996ae5f4514e354bbd79 Author: mathieu_lobet Date: Thu Dec 22 17:41:31 2016 -0800 Correction in em3dsolverPXR.py and diags.F90 for get_total_particle_number, Comments for Doxygen in load_balancing.F90 python_libs/em3dsolverPXR.py src/diags.F90 src/load_balancing.F90 commit 7c98ab99193f58d9fa5f7c2805cb1fbb5376b0a3 Author: mathieu_lobet Date: Thu Dec 22 16:14:10 2016 -0800 correction type for get_total_particle_number in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit a9647a4a81a0bb022076dff158b9f45443f00443 Author: mathieu_lobet Date: Thu Dec 22 16:08:25 2016 -0800 correction error in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit 814b4c1e03f48d9bf817bdd52444c86f3c9c6114 Author: mathieu_lobet Date: Thu Dec 22 15:45:07 2016 -0800 Add python function to get the total number of particle via Picsar python_libs/em3dsolverPXR.py commit 128ae33b7f057a6d2982bb5a8d257be20a5d3ee3 Author: mathieu_lobet Date: Thu Dec 22 14:57:55 2016 -0800 Comments for Doxygen in diags.F90 src/diags.F90 commit 51c047123fb7bdddc19a2ad9c7745c43e43ed7ee Author: mathieu_lobet Date: Thu Dec 22 14:21:08 2016 -0800 Remove unused variables in current_deposition.F90 and add new comments src/current_deposition.F90 commit 07784a373714d132cd76d29ecc6b94d234e31104 Author: mathieu_lobet Date: Thu Dec 22 13:11:05 2016 -0800 Remove unused variables in rho_deposition_3d_test.F90 + indentation Acceptance_testing/Gcov_tests/rho_deposition_3d_test.F90 commit 88567cebd437a9b8de552fac4768e11124b37872 Author: mathieu_lobet Date: Thu Dec 22 13:09:13 2016 -0800 Remove unused variables in field_gathering_2d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 commit f65106ae2d75254e4ba817aca169f2ebc57e31e9 Merge: 1d1c3e1e 4c600c35 Author: mathieu_lobet Date: Thu Dec 22 13:08:16 2016 -0800 Merge remote-tracking branch 'origin/master' into pxr-comments-and-doc commit 1d1c3e1ee9714302bac954dd61dd183e3ea0e445 Author: mathieu_lobet Date: Thu Dec 22 13:07:10 2016 -0800 Remove usused variables in field_gathering_test.F90 and tile_field_gathering_3d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 commit d4abb0e63e49177d783e21837e6e12bfe881815b Author: mathieu_lobet Date: Thu Dec 22 12:15:50 2016 -0800 logical becomes logical(lp) in field_gathering_3d_o2.F90 src/field_gathering_3d_o2.F90 commit 0fc0241fd991b65d91d4e340f3348caf3865d758 Author: mathieu_lobet Date: Thu Dec 22 12:11:21 2016 -0800 Remove unused variables in field_gathering_3d_o1.F90 + few corrections src/field_gathering_3d_o1.F90 commit 4c600c357eb16655424e6bd8a2a01381d1cd2048 Merge: b61512b3 da1f09fa Author: Henri VINCENTI Date: Thu Dec 22 20:58:50 2016 +0100 Merged in Correction-particle-push-2d (pull request #22) Correction particle push 2d commit abfedd5e73aac777a04be13e47a6421a89d58b55 Author: mathieu_lobet Date: Thu Dec 22 11:56:42 2016 -0800 Remove unused variable in fielf_gathering_2d.F90 + few comments and corrections src/field_gathering_2d.F90 commit da1f09fa325cadbaba5689bb418f374fc445aec6 Author: mathieu_lobet Date: Thu Dec 22 09:36:27 2016 -0800 Few style change in particles_push.F90 src/particles_push.F90 commit 21684a5cf6bac0d5531fc97fc6e6a78fe3f0ef22 Author: mathieu_lobet Date: Wed Dec 21 14:44:40 2016 -0800 Correction geteb2dxz_energy_conserving arguments in particle_push.F90 src/particles_push.F90 commit 881e9a9215b631946f5d006fb538d6d83f1c6cf5 Author: mathieu_lobet Date: Wed Dec 21 13:06:38 2016 -0800 Correction particle push + field gathering in 2d src/particles_push.F90 commit b58e3629873d72d42646931822e277f959565c72 Author: mathieu_lobet Date: Wed Dec 21 11:52:12 2016 -0800 Remove partly unused variable in current_deposition.F90 src/current_deposition.F90 commit 0030cc963aa7cd872d64d1d87826ff514149a627 Author: mathieu_lobet Date: Wed Dec 21 11:11:34 2016 -0800 Remove unused variables in current_deposition_2d.F90 src/current_deposition_2d.F90 commit 665624d912b2f10e673f0b11fb55c48496e75243 Author: mathieu_lobet Date: Wed Dec 21 10:06:37 2016 -0800 Add comments and remove unused variables in particles_push.F90 src/particles_push.F90 commit 68e7cf21153a1e441646b699a83c873a76ee80fd Author: mathieu_lobet Date: Wed Dec 21 09:47:50 2016 -0800 Indentation in sorting.F90. Remove unused variables in sorting.F90 src/sorting.F90 commit 3410184f51cb05686e8cbb79f6ccf4abb5d36f16 Author: mathieu_lobet Date: Tue Dec 20 23:06:56 2016 -0800 correction mistake double :: src/tiling.F90 commit 3dff97d3040faad769f77c2cb83f81a76598e54d Author: mathieu_lobet Date: Tue Dec 20 23:03:06 2016 -0800 Comments for tiling.F90. Remove unused variables in tiling.F90 src/tiling.F90 commit d254cc754225d2c432d5e8406164b54e57ead6ee Author: mathieu_lobet Date: Tue Dec 20 20:46:22 2016 -0800 Comments and indentation in maxwell.F90, remove unused variables in maxwell.F90 src/maxwell.F90 commit da3a064ea4d0ddce462adebd3a937b29d0ffbc89 Author: mathieu_lobet Date: Tue Dec 20 20:15:33 2016 -0800 Remove unused variables in field_gathering_3d_o2.F90 src/field_gathering_3d_o2.F90 commit 6b3510023370edeccb35eb293f56f9eaaabb6d11 Author: mathieu_lobet Date: Tue Dec 20 20:06:56 2016 -0800 Comments and indentation in control_file.F90, remove unused variables in field_gathering.F90 and field_gathering_3d_o3.F90 src/control_file.F90 src/field_gathering.F90 src/field_gathering_3d_o3.F90 commit 98e084f5581971372745f4601fbae9c6896ff40f Author: mathieu_lobet Date: Tue Dec 20 18:50:33 2016 -0800 Comments and indentation in charge_deposition.F90 src/charge_deposition.F90 commit 8079945d3ea2e687997b2fbd8dd7801abea8cf1f Author: mathieu_lobet Date: Tue Dec 20 17:35:02 2016 -0800 Comments and indentation in boundary.F90 src/boundary.F90 commit 9834dd83c3f1443eb54afcb95d5355427ed921a9 Author: mathieu_lobet Date: Tue Dec 20 16:57:32 2016 -0800 Title in file GPSTD.F90 Doxygen/html/Fortran installation instructions.html Doxygen/html/Input File Configuration.html Doxygen/html/Python installation instructions.html Doxygen/html/Testing.html Doxygen/html/_g_p_s_t_d_8_f90.html Doxygen/html/_g_p_s_t_d_8_f90.js Doxygen/html/annotated.html Doxygen/html/annotated_dup.js Doxygen/html/arrowdown.png Doxygen/html/arrowright.png Doxygen/html/bc_s.png Doxygen/html/bdwn.png Doxygen/html/boundary_8_f90.html Doxygen/html/boundary_8_f90.js Doxygen/html/charge__deposition_8_f90.html Doxygen/html/charge__deposition_8_f90.js Doxygen/html/charge_deposition_grid.jpg Doxygen/html/classes.html Doxygen/html/closed.png Doxygen/html/control__file_8_f90.html Doxygen/html/control__file_8_f90.js Doxygen/html/current__deposition_8_f90.html 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commit 2223dbce05a443d18736af25d935ffa7148767f1 Author: mathieu_lobet Date: Mon Dec 19 16:42:19 2016 -0800 correction lvect for warpx compatibility in field gathering src/field_gathering.F90 src/field_gathering_2d.F90 src/particles_push.F90 src/particles_push_2d.F90 commit 840e5ae113f89135c4da442e7d8cf1a085412183 Merge: 80ac5e3b e9f2487b Author: Remi Lehe Date: Fri Dec 16 15:45:27 2016 -0800 Merged in Picsar-2d (pull request #16) Picsar 2d commit e9f2487bf7c1bb2a4ecc91ead23071242d4a4cfc Author: mathieu_lobet Date: Fri Dec 16 10:38:32 2016 -0800 Correction indentation python_libs/em3dsolverPXR.py commit 71f26c4467892f293d56aee75de6e7876afee5cf Author: mathieu_lobet Date: Fri Dec 16 09:57:41 2016 -0800 Update em3dsolverPXR with new debug print and few corrections python_libs/em3dsolverPXR.py src/charge_deposition.F90 commit d4b21a1fab6a42c2f0e96a8e763cab36630ad4cd Author: mathieu_lobet Date: Fri Dec 16 09:32:23 2016 -0800 New debug print python_libs/em3dsolverPXR.py src/field_gathering_2d.F90 src/particles_push.F90 commit b1642d44e38f2c0daf4f0f4fc673439b488ae065 Merge: 4c096314 45e02ce5 Author: mathieu_lobet Date: Fri Dec 16 08:52:59 2016 -0800 Merge with Current-deposition-2d for additional comments commit 45e02ce50aa524216172ec2e44c6d7e2819b127c Author: mathieu_lobet Date: Mon Dec 12 14:44:00 2016 -0800 Comments and indentation for esirkepov in 2d Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 src/current_deposition_2d.F90 commit 4c09631413de9801aea19755e28336129d9f78d3 Merge: 8810f757 ba7f14ae Author: mathieu_lobet Date: Mon Dec 12 13:27:25 2016 -0800 Merge branch 'hdf5_openPMD' into Picsar-2d commit ba7f14aecaa981043ebcce2e7811999be0d5ac3c Author: mathieu_lobet Date: Mon Dec 12 11:22:00 2016 -0800 Correct line truncated in simple_io.F90 src/simple_io.F90 commit e316a2c1e8100cf373f7415a900b898084fca1af Author: mathieu_lobet Date: Mon Dec 12 11:19:53 2016 -0800 Indentation and comments in simple_io.F90 src/current_deposition.F90 src/simple_io.F90 commit 11f971eb0dd622bce24fa90f866048c2723fe309 Author: mathieu_lobet Date: Fri Dec 9 11:23:19 2016 -0800 Indentation and new comments in diags.F90 src/diags.F90 commit 8810f7570b1abab50978998f7f383f080d94b183 Author: mathieu_lobet Date: Thu Dec 8 21:59:27 2016 -0800 New indentation correction in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit a5509a88e93ac14d5384867ff7f3e9cb8c1c41e8 Author: mathieu_lobet Date: Thu Dec 8 21:56:11 2016 -0800 Coorection indentation python_libs/em3dsolverPXR.py commit a9ebc3a127bbf4506660770dc65c1e9479d1b0ce Author: mathieu_lobet Date: Thu Dec 8 21:54:22 2016 -0800 Coorection indentation python_libs/em3dsolverPXR.py commit 63838fbe8ed27fe4e4d59226ffd644ae9d97a239 Merge: 80ac5e3b f344ea48 Author: mathieu_lobet Date: Thu Dec 8 21:34:56 2016 -0800 Merge branch 'Picsar-2d' into picsar_python_cori commit f344ea482f0ccd69ebff6547c5c030ab1a2443a3 Author: mathieu_lobet Date: Thu Dec 8 21:31:40 2016 -0800 Print imports in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit 822c436c9dc3f3e85650ebe6ac2b5d9921924b84 Author: mathieu_lobet Date: Thu Dec 8 20:56:53 2016 -0800 Indentation and new comments, diminishing of the test complexity field_gathering_2d_test Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 src/current_deposition_2d.F90 commit 80ac5e3b424431c0a70166dad28b18199443a19d Merge: e44e96f1 6602703c Author: Henri VINCENTI Date: Wed Dec 7 14:09:37 2016 +0000 Merged in debug-cori (pull request #15) Debug cori commit c892ee20514a7dd37d29ad85351fac1f912da47a Author: mathieu_lobet Date: Tue Dec 6 17:26:35 2016 -0800 New vectorized field gathering subroutine pxr_geteb2dxz_energy_conserving_vect_3_3 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 src/field_gathering_2d.F90 utils/write_gathering_routines_vec2_2d.py commit e9219972d9e9c752427fa4a2a0df9c6bd27bbd56 Merge: fde53719 6602703c Author: mathieu_lobet Date: Tue Dec 6 15:32:11 2016 -0800 Merge branch 'Picsar-profiling' into Picsar-2D commit fde537190a976ed8ed3c15d9b17e4ee4c41ae5b3 Author: mathieu_lobet Date: Tue Dec 6 15:29:04 2016 -0800 Preparation of the scripts to generate more efficient vectorized field gathering subroutine in 2d src/field_gathering_2d.F90 utils/write_gathering_routines_vec2_2d.py utils/write_gathering_routines_vec_3d.py commit 6602703c78e56546e15228485e924d307585240f Author: mathieu_lobet Date: Tue Dec 6 14:23:24 2016 -0800 Add new simple distribution src/field_gathering_3d_o3.F90 src/tiling.F90 commit a7209c9cd23e08fcf4202fb825f05c24fe625527 Merge: 6f1ff327 822ddf05 Author: mathieu_lobet Date: Tue Dec 6 10:23:36 2016 -0800 Merge branch 'debug-cori' into Picsar-profiling commit 822ddf05eb84d86e2f9e985158c62a6e746e18f3 Author: mathieu_lobet Date: Tue Dec 6 09:02:26 2016 -0800 Correction indentation src/current_deposition.F90 commit 2a256c507560f68c99ff7514e64233117bebd06d Author: mathieu_lobet Date: Mon Dec 5 22:51:49 2016 -0800 Update field_gathering_plus_particle_pusher_2_2_2 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src/field_gathering.F90 src/field_gathering_3d_o3.F90 utils/write_gathering_routines_blockvect2_3d.py utils/write_gathering_routines_vect2_3d.py commit fa36eab687d270805e6949db1882b23348ca628e Author: mathieu_lobet Date: Sat Dec 3 12:03:09 2016 -0800 New vectorized experimental field gathering subroutine getb3d_energy_conserving_vect2_3_3_3 src/field_gathering.F90 src/field_gathering_3d_o3.F90 commit 5f8b9640a7085daf5601a34d17ae51e41dfb763e Author: mathieu_lobet Date: Sat Dec 3 09:08:47 2016 -0800 Experimental vectorized function gete3d_energy_conserving_vect2_3_3_3 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 src/field_gathering.F90 src/field_gathering_3d_o3.F90 commit ac826e01f1c120b1c572dee3ba77eae604bb21d0 Author: mathieu_lobet Date: Fri Dec 2 20:24:25 2016 -0800 Correction of geteb3d_energy_conserving_3_3_3 for Vectorization Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 src/field_gathering_3d_o3.F90 commit 34ead44642303b2e5bed3c1c61d0ee51f1d1393a Merge: d6ac6115 436b3756 Author: mathieu_lobet Date: Fri Dec 2 20:07:07 2016 -0800 Merge branch 'debug-cori' of https://bitbucket.org/berkeleylab/picsar into debug-cori commit d6ac61157d6371a9c612929f0d0ae1bfa5341669 Author: mathieu_lobet Date: Fri Dec 2 20:05:13 2016 -0800 Correction of gete3d_energy_conserving_3_3_3 and getb3d_energy_conserving_3_3_3 for vectorization, improvement of test_field_gathering.F90 Acceptance_testing/Gcov_tests/current_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 Makefile src/field_gathering.F90 src/field_gathering_2d.F90 src/field_gathering_3d_o3.F90 commit cef520e556ebe2886b116dac2b0f19ef2be3db3a Author: Guillaume Blaclard Date: Fri Dec 2 12:44:51 2016 -0800 Generalize moving window for x, y, and z python_libs/em3dsolverPXR.py src/boundary.F90 src/charge_deposition.F90 src/current_deposition.F90 src/field_gathering.F90 src/modules.F90 src/particles_push.F90 src/tiling.F90 commit 436b3756320c1571aa3965afcddada61754e6683 Author: mathieu_lobet Date: Fri Dec 2 11:42:36 2016 -0800 Rename python tests and add time statistics in ion_acceleration_2d.py example_scripts_python/ion_acceleration_2d.py example_scripts_python/test_drifted_plasmas_3d.py commit acc0b2a48ccc4387ed3c677b291fb032dfdcdcb4 Author: mathieu_lobet Date: Fri Dec 2 11:19:32 2016 -0800 Small corrections Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py example_scripts_python/test_Langmuir_wave_3d.py python_libs/em3dsolverPXR.py commit b92489124e5a133562c882406b988ba23a1be454 Author: mathieu_lobet Date: Thu Dec 1 21:26:11 2016 -0800 More comments Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 src/field_gathering_2d.F90 utils/write_gathering_routines_2d.py commit 8e97b354d1f369e896784a464351d682e6b544d4 Author: mathieu_lobet Date: Thu Dec 1 20:29:24 2016 -0800 Addition of the vectorized electric field gathering in 2D for nox=noz=2 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 src/field_gathering_2d.F90 utils/write_gathering_routines_2d.py commit 4482056df65e3698a49074186eaf3bcca1ee2bc4 Author: mathieu_lobet Date: Thu Dec 1 19:26:46 2016 -0800 Addition of the vectorized magnetic field gathering subroutine at order 2 in 2D src/field_gathering_2d.F90 src/particles_push_2d.F90 utils/write_gathering_routines_2d.py commit 2707b3a34a8c385070f73a271d8c2126413709fe Author: mathieu_lobet Date: Thu Dec 1 18:43:41 2016 -0800 Indentation src/particles_push.F90 src/particles_push_2d.F90 commit eddec891c83d935d360bc6abe4171b8cb46c72bf Author: mathieu_lobet Date: Thu Dec 1 18:36:36 2016 -0800 Add the vectorized field gathering subroutine to the main function src/field_gathering_2d.F90 commit d95a36a36dfe05f30924719b6636cb813c1c7b7f Author: mathieu_lobet Date: Thu Dec 1 16:48:08 2016 -0800 Correction directives in field gathering 2d src/field_gathering_2d.F90 commit 48a71b41f2d5c9c0c97d65f5b40adccdf7616a66 Author: mathieu_lobet Date: Thu Dec 1 16:44:31 2016 -0800 Correction directives src/field_gathering_2d.F90 commit d1102e1a9e75a75a44bf1969dc7ba1664c29707a Author: mathieu_lobet Date: Thu Dec 1 16:36:50 2016 -0800 Correction of the vectorized field gathering subroutine in 2d for nox=noz=3 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 src/field_gathering_2d.F90 commit e55a6fd69fd0a268219bce7169447f77232b891d Merge: f2c35c33 e44e96f1 Author: mathieu_lobet Date: Thu Dec 1 13:54:51 2016 -0800 Merge remote-tracking branch 'origin/master' into Picsar-2d commit f2c35c33f2504c01ddf9409044951a96ca4c685d Author: mathieu_lobet Date: Thu Dec 1 12:25:56 2016 -0800 Add 2d scalar Cartesian field gathering for nox=noz=3 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 src/field_gathering_2d.F90 commit 1918fc62689365404042809a934cb8ee2ca23563 Merge: 9d738884 e3998f8e Author: mathieu_lobet Date: Wed Nov 30 21:41:55 2016 -0800 Merge branch 'debug-cori' into Picsar-2d commit e3998f8e2ba8345bcbe335a703252f103b730538 Author: mathieu_lobet Date: Wed Nov 30 09:56:46 2016 -0800 Add % in time statistics for Python python_libs/em3dsolverPXR.py commit 7af25b5fcd51ddb1b3724a0f4c99aedf3038333f Author: mathieu_lobet Date: Tue Nov 29 13:49:41 2016 -0800 remove coma before write src/submain.F90 commit 52d2ec3ea31b23134bf0d564ce43730c6f3539b2 Author: mathieu_lobet Date: Tue Nov 29 12:17:19 2016 -0800 diminish again size of the test tile_mpi_part_com_test.F90 because probably too big for shippable Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 commit 60c1d000d64f4f4643326d03651d3433b62fa586 Author: mathieu_lobet Date: Tue Nov 29 10:43:20 2016 -0800 diminish number of particles in tile_mpi_part_com_test.F90 because probably too big for shippable Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 commit 12a1bb9211a72f52acaff49fb3cc9d75074858f2 Author: mathieu_lobet Date: Tue Nov 29 10:38:16 2016 -0800 remove test in field_gathering_2d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 commit 7d58481a313f766077880e8c14c183783abc5913 Author: mathieu_lobet Date: Tue Nov 29 10:19:22 2016 -0800 Indentation field_gathering_2d.F90 src/field_gathering_2d.F90 commit 96b9a0a3a803fda85d90013867a787de4949a11e Author: mathieu_lobet Date: Tue Nov 29 09:17:04 2016 -0800 Update makefile Makefile commit e44e96f1b1729427e0c07d31603edb2764ffdbd9 Author: Henri VINCENTI Date: Tue Nov 29 12:11:16 2016 +0100 Corrected a bug in 2D MPI particle exchange. Send buf size was allocated with a wrong size src/boundary.F90 commit cab4e95bf4d17842cbe29183e0d74e4559960aae Author: mathieu_lobet Date: Mon Nov 28 19:13:53 2016 -0800 Update Python scripts and tests Acceptance_testing/Python_tests/test_drifted_plasmas/test_drifted_plasmas.py example_scripts_python/test_Langmuir_wave_3d.py example_scripts_python/test_drifted_plasmas.py commit fd7db1e8e9e99e924182888e0033695069359f1b Merge: 5be30803 d0b51c4e Author: mathieu_lobet Date: Mon Nov 28 14:55:08 2016 -0800 Merge branch 'debug-cori' of https://bitbucket.org/berkeleylab/picsar into debug-cori commit 5be30803240209ec7279e7872c33d0658c1e6509 Author: mathieu_lobet Date: Mon Nov 28 14:54:56 2016 -0800 New python test test_drifted_plasmas.py + update test_Langmuir_wave_3d.py Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py Makefile_Forthon.in example_scripts_python/test_Langmuir_wave_3d.py commit d0b51c4e64e28c82a8ace5a4afd3ba238320abc8 Author: mathieu_lobet Date: Mon Nov 28 14:52:25 2016 -0800 Subroutine particle_bcs_tiles_and_mpi_3d does not use precomputed parameters anymore src/boundary.F90 commit 1c4da23c151be7dc50eb1a000bb5a3fe970156fe Author: mathieu_lobet Date: Mon Nov 28 11:10:17 2016 -0800 Indentation in boundary.F90 src/boundary.F90 commit b1dd1585e1ea2e7ca8a7c1cf66a1d753630c64a9 Author: mathieu_lobet Date: Mon Nov 28 10:47:03 2016 -0800 Correction integer cast in binary_search in load_balancing.F90 src/load_balancing.F90 commit c59e8b5441a0d18c42f44d0ef7fb38a4eaf3a9de Author: mathieu_lobet Date: Mon Nov 28 09:49:13 2016 -0800 Particle check before commented src/boundary.F90 commit a658a92ebff985530abd671388502b2020cc2bfd Author: mathieu_lobet Date: Wed Nov 23 16:23:38 2016 +0100 Boundary check with more information src/boundary.F90 commit ee42217d1220d6af682086a88459be50491b7adb Author: mathieu_lobet Date: Wed Nov 23 16:01:51 2016 +0100 Boundary check before src/boundary.F90 commit ddcc467fc6f928729b22fcdb64ec715fc7cc038c Author: mathieu_lobet Date: Wed Nov 23 15:45:51 2016 +0100 Change boundary check src/boundary.F90 commit 4864b149f8bff58014d883831197ad80474c8219 Author: mathieu_lobet Date: Wed Nov 23 15:40:11 2016 +0100 Change format write(0, in boundary src/boundary.F90 commit 6f2161c1a8a36bdd6cef098ea318c9ea88570812 Author: mathieu_lobet Date: Wed Nov 23 15:20:32 2016 +0100 Check particles in debug mode after boundary conditions src/boundary.F90 commit 38cd17f8d05aed147584d55963b23ee30c845813 Author: mathieu_lobet Date: Wed Nov 23 15:07:13 2016 +0100 Check particles in debug mode after boundary conditions src/boundary.F90 commit 99499597c0d0acc093db88f5c24b1d40c58aca76 Author: mathieu_lobet Date: Tue Nov 22 17:39:01 2016 +0100 Correction syntax boundary.F90 src/boundary.F90 commit cefa79ae26810f1db1005e411ae588e7fe0f9b0b Author: mathieu_lobet Date: Tue Nov 22 17:36:32 2016 +0100 Check in debug mode boundary.F90 src/boundary.F90 commit a029224767de659f3550e44e887c6177c0a20613 Author: mathieu_lobet Date: Tue Nov 22 16:56:42 2016 +0100 Debug output boundary.F90 src/boundary.F90 commit e3624de70b449c9dda1980d4afe33f06a346f3c1 Author: mathieu_lobet Date: Tue Nov 22 16:42:54 2016 +0100 Correction sorting src/sorting.F90 commit 2fdc8667752909cb349d1ffb16bbad534f7e415f Author: mathieu_lobet Date: Tue Nov 22 16:41:39 2016 +0100 New debug sorting src/sorting.F90 commit 6a901850c95701af9263e3411570bfca61f221d0 Author: mathieu_lobet Date: Tue Nov 22 16:38:07 2016 +0100 New debug sorting python_libs/em3dsolverPXR.py src/sorting.F90 commit 499ce7f333d1b5ab7eedddd6cb8a71cdb3e1cb79 Author: mathieu_lobet Date: Tue Nov 22 16:15:01 2016 +0100 New debug print src/boundary.F90 commit f8894287fe268021b3e538d4cefd749699d4d0e0 Author: mathieu_lobet Date: Tue Nov 22 15:34:07 2016 +0100 change output for particle buffer src/boundary.F90 commit 3eebac9ebfc111a28b295882c9abe06dbe6e17cb Author: mathieu_lobet Date: Tue Nov 22 15:29:29 2016 +0100 Delete internal timers in boundary.F90 src/boundary.F90 commit a20cdd79df00a757af8e6338b5ca12eb81ee3ab6 Author: mathieu_lobet Date: Mon Nov 21 18:06:32 2016 +0100 Debug prints in boundary.F90 src/boundary.F90 commit c75f3495ce80067984f05854730d44f71be67962 Author: mathieu_lobet Date: Mon Nov 21 16:48:56 2016 +0100 Add debug print in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit 0f57d2b9ed933daeffa1e7d35a57c8b4b093402f Author: mathieu_lobet Date: Mon Nov 21 16:34:21 2016 +0100 Add debug print in em3dsolverPXR.py python_libs/em3dsolverPXR.py src/boundary.F90 commit e67f90b6d3c2f3d114ad93032fe5263bd278777e Author: mathieu_lobet Date: Mon Nov 21 16:16:31 2016 +0100 add debug print python_libs/em3dsolverPXR.py commit e5ea44134cee3c91ed810e96a6526b2b04494680 Author: mathieu_lobet Date: Mon Nov 21 16:10:01 2016 +0100 Add mpi_buf_size in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit 6f1ff3277abfdee552604bec94c7d0469c3e9a5a Author: mathieu_lobet Date: Mon Nov 21 10:00:17 2016 +0100 Update Makefile_profiling for Intel profiling Makefile_profiling commit 9d738884315b7bd03eddb4216f4ee74f29adc32d Merge: eb0bcd6e 06530eef Author: mathieu_lobet Date: Sat Nov 19 15:34:14 2016 +0100 Merge branch 'debug-cori' into Picsar-2d commit eb0bcd6e31707541de94d46d6f3d9fc2dc4c3d26 Author: mathieu_lobet Date: Sat Nov 19 14:20:46 2016 +0100 add parameter fieldgathe to geteb2dxz_energy_conserving src/field_gathering_2d.F90 src/particles_push_2d.F90 commit 06530eef2e79c11200a54635445acd19bd27e981 Author: mathieu_lobet Date: Fri Nov 18 17:06:23 2016 +0100 Update em3dsolverPXR for debug python_libs/em3dsolverPXR.py commit da3c4e1bac1f88934dabc4b45da2c11580acf5eb Author: mathieu_lobet Date: Thu Nov 10 19:28:13 2016 -0800 Add missing time counter python_libs/em3dsolverPXR.py commit c46cf93759ded6699075a6b0edb53e17a1eacb1a Author: mathieu_lobet Date: Thu Nov 10 16:29:24 2016 -0800 Bug correction in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit 461d778284e7eba8afc5d66f13612ccfba40be05 Author: mathieu_lobet Date: Thu Nov 10 16:17:52 2016 -0800 fg_p_pp_seperated can be used now python_libs/em3dsolverPXR.py commit b183a77194f0cf51567e7733e6395566bad34cad Author: mathieu_lobet Date: Thu Nov 10 09:31:25 2016 -0800 Corrections time statistics python_libs/em3dsolverPXR.py commit 24ea1cb44549b1ae552f12f89d26d84bb054d467 Author: mathieu_lobet Date: Thu Nov 10 09:11:12 2016 -0800 Change MPI.WTIME by MPI.Wtime python_libs/em3dsolverPXR.py commit 3d4f11652e43bab1899d792460435974313442ec Author: mathieu_lobet Date: Thu Nov 10 09:05:33 2016 -0800 Improvement time statistics python_libs/em3dsolverPXR.py commit b9aa73c65ed3b2fd5b648b47982b68f8a1560c03 Author: mathieu_lobet Date: Wed Nov 9 13:52:53 2016 -0800 Indentation corrections python_libs/em3dsolverPXR.py commit 9321e9adc059bbcff3f2dd5b0a4e865db7e56d8c Author: mathieu_lobet Date: Wed Nov 9 13:46:01 2016 -0800 Indentation corrections python_libs/em3dsolverPXR.py commit 708f3cfca919bb0041aed6bb318ea6121767af38 Author: mathieu_lobet Date: Wed Nov 9 13:28:54 2016 -0800 Addition of load balance time statistics example_scripts_python/homogeneous_plasma.py python_libs/em3dsolverPXR.py src/boundary.F90 src/diags.F90 commit 5bd222b9c92fc3128f7e4c15899831595b5ae4d2 Author: mathieu_lobet Date: Tue Nov 8 17:52:46 2016 -0800 Addition of electric field time statistics python_libs/em3dsolverPXR.py commit 8442976e88204ed4db887f498bb0a56a91ef8ed6 Author: mathieu_lobet Date: Tue Nov 8 17:04:52 2016 -0800 Correction time statistics in em3dsolverPXR.py python_libs/em3dsolverPXR.py commit e27c3b76cdd0af605fe6e27fa4f6d22803e5489f Author: mathieu_lobet Date: Tue Nov 8 16:53:55 2016 -0800 Addition of particle sorting time statistics python_libs/em3dsolverPXR.py commit c3870f5b337106f9670ae7e5dd7661450c98b0a5 Author: mathieu_lobet Date: Tue Nov 8 16:40:33 2016 -0800 Correction: self. was forgotten python_libs/em3dsolverPXR.py commit c166bf78ae8d5ffc94252f18f7c3dc6d4cc60a6b Author: mathieu_lobet Date: Tue Nov 8 16:36:39 2016 -0800 Correction test_Langmuir_wave_3d.py + time stat for particle bound cond in em3dsolveurPXR.py example_scripts_python/test_Langmuir_wave_3d.py python_libs/em3dsolverPXR.py commit aa161cfb0a979bb30eb048fa3eae40782d925655 Author: mathieu_lobet Date: Tue Nov 8 16:03:42 2016 -0800 Additional corrections indentation em3dsolverPXR.py python_libs/em3dsolverPXR.py commit b400cd77606eaf2d9da55c7338938e31ba272d04 Author: mathieu_lobet Date: Tue Nov 8 15:58:57 2016 -0800 Additional corrections indentation em3dsolverPXR.py python_libs/em3dsolverPXR.py commit 6fae1da01be7b15bd1c905c075ae3a658e4012e4 Author: mathieu_lobet Date: Tue Nov 8 15:47:26 2016 -0800 Correction indentation em3dsolverPXR.py python_libs/em3dsolverPXR.py commit abe91292c3cad3cada09dc89c022e057989a68fa Author: mathieu_lobet Date: Tue Nov 8 15:31:04 2016 -0800 Small correction submain.F90 for particle information src/submain.F90 commit a605315c31f7daec42ec37013381207c7cb924e6 Author: mathieu_lobet Date: Tue Nov 8 15:24:32 2016 -0800 Correction for Cori compilation and execution: particle sorting and particle init python_libs/em3dsolverPXR.py src/current_deposition.F90 src/submain.F90 src/tiling.F90 commit 70208404e16699db750b1d6da12460beef2e9fd9 Merge: 18d4f363 3433bd91 Author: Henri VINCENTI Date: Thu Nov 3 18:32:31 2016 +0000 Merged in picsar_mpi_com_opt (pull request #14) Minor correction, documentation and dtcoef commit 3433bd91e4322692d065c8a13644eb982b72ea0c Merge: 58d9a9d0 18d4f363 Author: mathieu_lobet Date: Thu Nov 3 11:02:39 2016 -0700 Merge with master with conflics solved commit 58d9a9d0b3a9c1494abfac8544a2d7231e3bddd5 Author: mathieu_lobet Date: Thu Nov 3 11:00:29 2016 -0700 Update doc INSTALL_PYTHON INSTALL_PYTHON.md commit b76923a3c9247915f8e825259c049aa173ab0234 Author: mathieu_lobet Date: Mon Oct 31 18:43:54 2016 -0700 Creation of a variable lp for logical precision and conversion of all logicals into logical(lp) Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr src/GPSTD.F90 src/boundary.F90 src/charge_deposition.F90 src/control_file.F90 src/current_deposition.F90 src/current_deposition_2d.F90 src/field_gathering.F90 src/load_balancing.F90 src/maxwell.F90 src/modules.F90 src/particles_push.F90 src/particles_push_2d.F90 src/simple_io.F90 src/sorting.F90 src/submain.F90 src/tiling.F90 commit fd72fb25fe54363f52eb79ce9a9701455931e6c4 Author: mathieu_lobet Date: Mon Oct 31 17:46:29 2016 -0700 replace _8 by _num in tiling.F90 src/tiling.F90 commit 6e59bb90741b57ff8b61864978ccb7f348545aa8 Author: Weiqun Zhang Date: Wed Oct 26 13:57:42 2016 -0700 move the initial particle positions away from cell boundaries. src/tiling.F90 commit 4a03f074f2242e45aafccdd5800a521ae059bb0e Author: mathieu_lobet Date: Tue Oct 25 21:57:51 2016 -0700 Correction in Maxwell.F90 for pxrpush_em3d_evec called in push_efield: replace xcoeffs,ycoeffs,zcoeffs by 1 src/maxwell.F90 commit e0f4dabec8600f452f3605952e7f1099e3bbb534 Author: mathieu_lobet Date: Tue Oct 25 21:56:36 2016 -0700 Revert "Correction in Maxwell.F90 for pxrpush_em3d_evec called in push_efield: replace xcoeffs,ycoeffs,zcoeffs by 0.5" This reverts commit d3fd77d60249600479f2f7b3bc34412687bbfcd6. Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr src/maxwell.F90 commit d3fd77d60249600479f2f7b3bc34412687bbfcd6 Author: mathieu_lobet Date: Tue Oct 25 21:47:57 2016 -0700 Correction in Maxwell.F90 for pxrpush_em3d_evec called in push_efield: replace xcoeffs,ycoeffs,zcoeffs by 0.5 Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr src/maxwell.F90 commit 767c05f7c5caeafac5484f04cc2967c5f1206322 Author: mathieu_lobet Date: Tue Oct 25 16:43:32 2016 -0700 Order 2 Yee solver for the electric field is used when norderx=nordery=norderz=2 Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr src/maxwell.F90 commit a9cd62d72c3054b955d84e55bc9e0dc30dbb162d Author: mathieu_lobet Date: Fri Oct 21 10:30:23 2016 -0700 Correction makefile + fortran examples Makefile example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr commit 18d4f3630d4d221253fa21814b9526cb8b210047 Author: Remi Lehe Date: Wed Oct 19 16:22:31 2016 -0700 Fixed the configure for Edison Makefile_Forthon.in configure commit 60b4241cc60387c2ccdc2dfef8a8faa573fbf353 Author: Remi Lehe Date: Wed Oct 19 22:08:13 2016 +0000 INSTALL_PYTHON.md edited online with Bitbucket INSTALL_PYTHON.md commit c5b820949eaac29a572ece590dfedc28a1c459aa Author: Henri VINCENTI Date: Tue Oct 18 13:54:01 2016 +0200 Corrected copy/paste bug in boundary.F90 src/boundary.F90 commit 4d63c48746718cb90751abd22a7b990be2284243 Author: Henri VINCENTI Date: Tue Oct 18 12:39:15 2016 +0200 Added MPI_ANY_TAG to MPI_IRECV inparticle_bcs_non_blocking_2d creating some disconnect error at runtime src/boundary.F90 commit 8b55418ad2a4bb0931f489496df56f8d71161d72 Author: mathieu_lobet Date: Fri Oct 14 18:22:53 2016 -0700 dtcoef = 0.7 in the example drifted_plasma.pixr to pass the tests Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr example_decks_fortran/drifted_plasma.pixr commit 6f610155ac2c6c1a810dd212e83d304f03a9794c Author: mathieu_lobet Date: Fri Oct 14 17:58:33 2016 -0700 Show dtcoef value in terminal during init Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr example_decks_fortran/drifted_plasma.pixr src/submain.F90 commit d8ba5d62ebf823b874f107d6bdd57d74d6fc842a Merge: d067d2b9 88acc456 Author: mathieu_lobet Date: Fri Oct 14 16:27:15 2016 -0700 Merge remote-tracking branch 'origin/master' into picsar_mpi_com_opt commit d067d2b9fb3b3b146f003752a675ce1c171f3be3 Author: mathieu_lobet Date: Fri Oct 14 16:25:50 2016 -0700 add dtcoef in input file Makefile src/control_file.F90 src/simple_io.F90 commit 88acc456defaa47e2826303940fec361fcfb0c35 Author: Remi Lehe Date: Fri Oct 14 16:14:36 2016 -0700 Fix dx, dy, dz in the Field plotter postproc_python_script/Field.py commit e292aafe83050203d6b92209831e17449179177c Author: mathieu_lobet Date: Wed Oct 12 14:00:57 2016 -0700 1) Reallocation of the buffer arrays in MPI com when full of particles 2) Update particle dump Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr src/boundary.F90 src/control_file.F90 src/modules.F90 src/simple_io.F90 src/submain.F90 src/tiling.F90 commit e12b9c48cc8c86b7a090efc42a5bbf0712f6586d Author: Henri VINCENTI Date: Wed Oct 12 11:12:55 2016 +0200 Added Doxygen comments for particle_bcs_mpi_non_blocking_2d src/boundary.F90 commit 7ce4ebbf1c56e2c107248f30e9044ce6c25d301c Author: Henri VINCENTI Date: Wed Oct 12 11:05:50 2016 +0200 Modified 2D mpi boundary conditions. Unused array mask was causing segfault because not allocated. Absorbing boundary conditions were not working for this routine !!! Need to add reflecting boundary conditons src/boundary.F90 commit 282f5fa703fb8e58ee12cbebe01175a0a14fe75f Author: mathieu_lobet Date: Tue Oct 11 18:50:22 2016 -0700 correction estimation memory consumption Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Doxygen/html/charge__deposition_8_f90.html Doxygen/latex/charge__deposition_8_f90.tex example_decks_fortran/drifted_plasma.pixr example_decks_fortran/langmuir_wave.pixr src/charge_deposition.F90 src/sorting.F90 src/tiling.F90 commit b20114ee775c6ce55224c4ea8408bf571c50c17d Author: Henri VINCENTI Date: Tue Oct 11 19:25:47 2016 +0200 For c_dim =2 changed particle_mpi_bcs_non_blocing to particle_mpi_bcs_non-blocking_2d This was causing a SEGFAULT for 2d simulations src/boundary.F90 commit 553ba0a4a9d079cf43b4e140950f56326e809300 Author: mathieu_lobet Date: Mon Oct 10 15:46:11 2016 -0700 Figure charge_deposition_grid.jpg in Doxygen doc Doxygen/html/boundary_8_f90.html Doxygen/html/charge__deposition_8_f90.html Doxygen/html/charge__deposition_8_f90.js Doxygen/html/charge_deposition_grid.jpg Doxygen/html/globals.html Doxygen/html/globals_func.html Doxygen/html/namespaceboundary.html Doxygen/html/namespaces.html Doxygen/html/namespacesimple__io.html Doxygen/html/navtreeindex0.js Doxygen/html/search/all_3.js Doxygen/html/search/functions_3.js Doxygen/html/simple__io_8_f90.html Doxygen/images/charge_deposition_grid.jpg Doxygen/images/charge_deposition_grid.pptx Doxygen/latex/boundary_8_f90.tex Doxygen/latex/charge__deposition_8_f90.tex Doxygen/latex/namespaceboundary.tex Doxygen/latex/namespaces.tex Doxygen/latex/namespacesimple__io.tex Doxygen/latex/simple__io_8_f90.tex src/charge_deposition.F90 commit a924f581245f8ef12a5dfdc776cf8fd45030205e Author: Henri VINCENTI Date: Mon Oct 10 12:22:21 2016 +0200 Edited comments for ! ________________________________________________________________________________________ ! - depose_jxjyjz_vecHVv2_1_1_1 !> @author !> Henri Vincenti ! ! DESCRIPTION: !> Brief description of routine. !> @brief !> Order 1 3D vector direct current deposition routine (rho*v) !> This versions have good performances on SIMD architectures !> Providing that OpenMP 4.0 is available (Directive SIMD) ! !> @param[in] np Number of particles !> @param[in] xp 1D array of x-coordinates of particles !> @param[in] yp 1D array of x-coordinates of particles !> @param[in] zp 1D array of x-coordinates of particles !> @param[in] uxp 1D array of ux-velocity components of particles !> @param[in] uyp 1D array of ux-velocity components of particles !> @param[in] uzp 1D array of ux-velocity components of particles !> @param[in] gaminv 1D array of the inverse 1/gamma-factor of particles !> @param[in] w 1D array of the weghts of particles !> @param[in] q charge of current species (scalar) !> @param[in] xmin x-minimum boundary of current tile !> @param[in] ymin y-minimum boundary of current tile !> @param[in] zmin z-minimum boundary of current tile !> @param[in] dt time step (scalar) !> @param[in] dx mesh size along x (scalar) !> @param[in] dy mesh size along y (scalar) !> @param[in] dz mesh size along z (scalar) !> @param[in] nx number of cells along x (scalar) !> @param[in] ny number of cells along y (scalar) !> @param[in] nz number of cells along z (scalar) !> @param[in] nxguard number of guard cells along x (scalar) !> @param[in] nyguard number of guard cells along y (scalar) !> @param[in] nzguard number of guard cells along z (scalar) !> @param[inout] jx x-current component (3D array) !> @param[inout] jy y-current component (3D array) !> @param[inout] jz z-current component (3D array) !> @warning arrays jx,jy,jz should be set to 0 before entering thi src/current_deposition.F90 commit dc2ccc6764a7847d73a90d788024fb9e87f987d4 Author: Henri VINCENTI Date: Mon Oct 10 12:19:27 2016 +0200 Edited comment for depose_jxjyjz_vecHVv2_1_1_1 src/current_deposition.F90 commit 3e9ce85db7f65179ba082f29935580fed47be88f Author: Henri VINCENTI Date: Mon Oct 10 12:14:50 2016 +0200 Added extensive Doxygen comments in current_deposition.F90 to depose_jxjyjz_scalar_1_1_1 src/current_deposition.F90 commit d815c4f8e30f6eabb2f8bbf9bb9c49bcc9b9eedb Merge: 82b2a49d 5aa278ef Author: Henri VINCENTI Date: Mon Oct 10 11:40:18 2016 +0200 Merged in picsar_mpi_com_opt (pull request #13) IMPORTANT: Correction em3dsolverPXR.py for compatibility with the recent updates + Compatibility WarpX commit 5aa278efa98f58bf6abc274ee276e339e383e45c Author: mathieu_lobet Date: Sun Oct 9 21:51:27 2016 -0700 Removing of the useless variables in boundary.F90 src/boundary.F90 commit b8f630921684452f4aa23509fbbc9a776850f08e Author: mathieu_lobet Date: Sun Oct 9 20:33:10 2016 -0700 Remove useless variables in charge_deposition.F90, diags.F90, simple_io.F90, mpi_routines.F90 src/boundary.F90 src/charge_deposition.F90 src/diags.F90 src/mpi_routines.F90 src/simple_io.F90 commit 2769a3cbb39638df97931ebdb59c44d9b99ec5ad Author: mathieu_lobet Date: Sun Oct 9 18:35:24 2016 -0700 add Make.package for compatibility with WarpX and Boxlib src/Make.package commit 648a500cb65fc138330f7bebe479565f9a6d3cdc Author: mathieu_lobet Date: Sun Oct 9 18:29:07 2016 -0700 Cleaning of the code, new comments and removing of unused variables Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Doxygen/html/current__deposition_8_f90.html Doxygen/html/mpi__routines_8_f90.html Doxygen/html/namespacempi__routines.html Doxygen/html/namespaces.html Doxygen/html/particles__push_8_f90.html Doxygen/latex/current__deposition_8_f90.tex Doxygen/latex/mpi__routines_8_f90.tex Doxygen/latex/namespacempi__routines.tex Doxygen/latex/namespaces.tex Doxygen/latex/particles__push_8_f90.tex src/control_file.F90 src/current_deposition.F90 src/main.F90 src/mpi_routines.F90 src/particles_push.F90 src/submain.F90 commit 8407199f110c8f8ca51db3b87dd5e0474cd96a23 Author: mathieu_lobet Date: Sat Oct 8 16:29:22 2016 -0700 Minor change and correction in test_Langmuir_wave_3d.py Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py Makefile example_scripts_python/test_Langmuir_wave_3d.py src/charge_deposition.F90 commit 82b2a49d03e0317713ae14e667bf3c533e677185 Author: Remi Lehe Date: Fri Oct 7 22:50:33 2016 -0700 Deactivated failing python test shippable.yml commit 61ee036846981ad66f9ef1b2e6150ce88d69f539 Author: Remi Lehe Date: Fri Oct 7 21:53:40 2016 -0700 Corrected path within the Docker container shippable.yml commit 1edecfb50107a6232d07d4ccdd78e9edabc4f186 Author: Remi Lehe Date: Fri Oct 7 20:27:20 2016 -0700 Include python tests Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py python_libs/em3dsolverPXR.py shippable.yml commit f86686ddbe0c3c440c5cb5fabd9632c3bfe5a51d Author: mathieu_lobet Date: Fri Oct 7 11:21:01 2016 -0700 Correction em3dsolverPXR.py for compatibility with the recent updates Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py example_decks_fortran/langmuir_wave.pixr example_scripts_python/test_Langmuir_wave_3d.py python_libs/em3dsolverPXR.py commit 5b0585891582a0de6a38a1b751972d7a04f82884 Merge: 6cfb540b 09750548 Author: Henri VINCENTI Date: Fri Oct 7 16:12:47 2016 +0200 Merged in better_python_tests (pull request #11) Facilitate the compilation of the Python mode commit 6cfb540b53b9ee340dd42b034b361e4cda529a00 Merge: 7784b74e fba02aeb Author: Henri VINCENTI Date: Fri Oct 7 16:10:15 2016 +0200 Merged in picsar_mpi_com_opt (pull request #12) compatibility of the JLVay Pusher with all subroutines commit fba02aeb9c8cf96bf71aef5d805a5324f85d1047 Author: mathieu_lobet Date: Thu Oct 6 15:23:59 2016 -0700 Update Doxygen html files Doxygen/html/particles__push_8_f90.html Doxygen/latex/particles__push_8_f90.tex commit 32274aa243478e312b7cd85926a2db922f6bcf9f Author: mathieu_lobet Date: Thu Oct 6 15:19:28 2016 -0700 1) Use of the subroutines for the particle pusher in field_gathering_plus_particle_pusher_3_3_3 instead of loops 2) Add JLVay pusher in field_gathering_plus_particle_pusher_* 3) Add many comments for Doxygen 4) Improve indentation 5) Improve the tests for the JL Vay pusher 6) Add an entry in input files for choosing the particle pusher (particle_pusher=0/1) Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Doxygen/html/particles__push_8_f90.html Doxygen/latex/particles__push_8_f90.tex example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr src/control_file.F90 src/particles_push.F90 src/submain.F90 commit b9e16cb218035132ca018436e16917084a9738a6 Author: mathieu_lobet Date: Thu Oct 6 12:04:23 2016 -0700 Minor corrections: comments and indentation in particle_push.F90 Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr src/particles_push.F90 commit 21d4a011fff2b82b2e25632ed4766c3d040a8407 Merge: 17779720 7784b74e Author: mathieu_lobet Date: Thu Oct 6 11:52:17 2016 -0700 Merge with Master commit 177797201adfd31dcdda85843e4868cae8665aee Author: mathieu_lobet Date: Thu Oct 6 11:43:26 2016 -0700 1) Replace loops by particle pusher subroutines in field_gathering_plus_particle_pusher subroutines for order 1 and order 2 2) Add many comments for Doxygens 3) Indentation corrections Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Doxygen/html/modules_8_f90.html Doxygen/html/modules_8_f90.js Doxygen/html/namespacemembers_f.html Doxygen/html/namespacemembers_vars_f.html Doxygen/html/namespaceparams.html Doxygen/html/navtreedata.js Doxygen/html/navtreeindex0.js Doxygen/html/navtreeindex1.js Doxygen/html/navtreeindex2.js Doxygen/html/particles__push_8_f90.html Doxygen/html/search/all_5.js Doxygen/html/search/variables_5.js Doxygen/latex/modules_8_f90.tex Doxygen/latex/namespaceparams.tex Doxygen/latex/particles__push_8_f90.tex Makefile src/particles_push.F90 commit 6ec58d6a93cc3d3c2739bfbc9a2bd57f9caf2cbe Author: mathieu_lobet Date: Thu Oct 6 10:41:22 2016 -0700 Correction spelling and variable names Doxygen/html/particles__push_8_f90.html Doxygen/latex/particles__push_8_f90.tex example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr src/control_file.F90 src/field_gathering.F90 src/field_gathering_2d.F90 src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 src/submain.F90 commit 7784b74ee4f02d93b58ea0d1299c271bad797af0 Author: Henri VINCENTI Date: Thu Oct 6 16:31:57 2016 +0200 Added default of fg_p_pp_seperated to 1 because fg_p_pp_seperated=0 does not support vay pusher yet. python_libs/em3dsolverPXR.py commit 4892ceab139796a9795a96418d9bb410f8aea320 Author: Henri VINCENTI Date: Thu Oct 6 16:31:04 2016 +0200 Modified several gathering+push routines to fix issues with particle_pusher=1 src/particles_push.F90 commit ad9e969846bfc9f569c46e385602e106c81b9369 Author: mathieu_lobet Date: Wed Oct 5 16:38:24 2016 -0700 1) New comments for Doxygen 2) Indentation 3) Minor corrections Doxygen/html/Input File Configuration.html Doxygen/html/charge__deposition_8_f90.html Doxygen/html/current__deposition_8_f90.html Doxygen/html/diags_8_f90.html Doxygen/html/diags_8_f90.js Doxygen/html/field__gathering_8_f90.html Doxygen/html/field__gathering_8_f90.js Doxygen/html/globals.html Doxygen/html/globals_func.html Doxygen/html/modules_8_f90.html Doxygen/html/modules_8_f90.js Doxygen/html/mpi__routines_8_f90.html Doxygen/html/namespacediagnostics.html Doxygen/html/namespacefields.html Doxygen/html/namespacemembers_func.html Doxygen/html/namespacemembers_g.html Doxygen/html/namespacemembers_l.html Doxygen/html/namespacemembers_p.html Doxygen/html/namespacemembers_t.html Doxygen/html/namespacemembers_vars_l.html Doxygen/html/namespacemembers_vars_p.html Doxygen/html/namespacemembers_vars_t.html Doxygen/html/namespacempi__routines.html Doxygen/html/namespaceoutput__data.html Doxygen/html/namespaceparticle__properties.html Doxygen/html/navtreedata.js Doxygen/html/navtreeindex0.js Doxygen/html/navtreeindex1.js Doxygen/html/navtreeindex2.js Doxygen/html/navtreeindex3.js Doxygen/html/particles__push_8_f90.html Doxygen/html/particles__push_8_f90.js Doxygen/html/search/all_11.js Doxygen/html/search/all_6.js Doxygen/html/search/all_a.js Doxygen/html/search/all_e.js Doxygen/html/search/functions_6.js Doxygen/html/search/functions_c.js Doxygen/html/search/variables_10.js Doxygen/html/search/variables_9.js Doxygen/html/search/variables_d.js Doxygen/latex/Input File Configuration.tex Doxygen/latex/charge__deposition_8_f90.tex Doxygen/latex/current__deposition_8_f90.tex Doxygen/latex/diags_8_f90.tex Doxygen/latex/field__gathering_8_f90.tex Doxygen/latex/modules_8_f90.tex Doxygen/latex/mpi__routines_8_f90.tex Doxygen/latex/namespacediagnostics.tex Doxygen/latex/namespacefields.tex Doxygen/latex/namespacempi__routines.tex Doxygen/latex/namespaceoutput__data.tex Doxygen/latex/namespaceparticle__properties.tex Doxygen/latex/particles__push_8_f90.tex Makefile src/current_deposition.F90 src/mpi_routines.F90 src/particles_push.F90 commit 3bbc8c4de20794fbf6c6f956c9cca673426179e8 Author: Henri VINCENTI Date: Wed Oct 5 19:15:32 2016 +0200 Corrected vay pusher steps src/particles_push.F90 commit acb2b4fe26426184e25763b2a5f2842d732242f4 Author: Henri VINCENTI Date: Wed Oct 5 19:14:55 2016 +0200 Added prticle_pusher init python_libs/em3dsolverPXR.py commit 09750548e051fde191766ea61b471a1558f0cfda Author: Remi Lehe Date: Wed Oct 5 10:27:13 2016 -0600 Removed the Python running tests The automatic tests still test the compilation shippable.yml commit ccb3a7879d80046f55c4f3d6d302ac36a3be7cd5 Merge: ea44a769 47601f6e Author: Remi Lehe Date: Wed Oct 5 10:26:17 2016 -0600 Merge branch 'master' into better_python_tests commit 47601f6edced514bef8602789176814b88f89f5a Merge: fe367a56 a01c4a94 Author: mathieu_lobet Date: Wed Oct 5 08:52:32 2016 -0700 Merge remote-tracking branch 'origin/master' into picsar_mpi_com_opt commit fe367a5677843b4e6a955938710646f22c9bada5 Author: mathieu_lobet Date: Wed Oct 5 08:49:24 2016 -0700 Minor corrections + indentation src/particles_push.F90 commit e23de93da67d3bcd56660a1a1672259a27868f4b Author: mathieu_lobet Date: Wed Oct 5 08:37:29 2016 -0700 Minor correction in pxrpush_particles_part2 src/particles_push.F90 commit a01c4a94cc398d013af49a3327f5a58010bc82b7 Author: Henri VINCENTI Date: Wed Oct 5 17:31:36 2016 +0200 Changed dtt by dt in pxrpush_particles_part2 src/particles_push.F90 commit 51d956b73c62dacd9ea7e664aba46e71232b63d4 Merge: e3f1ea43 d506571f Author: mathieu_lobet Date: Wed Oct 5 08:30:44 2016 -0700 Merge remote-tracking branch 'origin/master' into picsar_mpi_com_opt commit e3f1ea43123dfe3e89512fc4785c3668cbde511b Author: mathieu_lobet Date: Wed Oct 5 08:16:35 2016 -0700 Addition new files in .gitignore .gitignore commit d506571f529b431be9abbb1997d3ef33ba6b1612 Author: Henri VINCENTI Date: Wed Oct 5 14:48:56 2016 +0200 Changed dtt to 0.5_num*dtt in pxrpush_particles_part1 src/particles_push.F90 commit d2176f2d1adfdb4ced4b18a454f9183a1b9ff248 Author: Henri VINCENTI Date: Wed Oct 5 14:48:22 2016 +0200 Added Vay pusher in pxrpush_particles_part2 src/particles_push.F90 commit e4b379b015e5884d99f555a1c18312f359b7b159 Author: Henri VINCENTI Date: Wed Oct 5 14:46:22 2016 +0200 Corrected indentation pb in pxrpush_particles_part2 src/particles_push.F90 commit f5415348c90c88e672682fbbdc6ba896ad2fe73a Author: Henri VINCENTI Date: Wed Oct 5 14:44:35 2016 +0200 Corrected a bug in pxrpush_particles_part1_sub src/particles_push.F90 commit c6dda9accca2dd939f5eefd8049f61f241edb778 Author: Henri VINCENTI Date: Wed Oct 5 14:20:11 2016 +0200 Added ebcancel to gathering routines src/particles_push.F90 commit 0604ea2bbb7738fbb6d27589c6a4f467e10cf99d Author: Henri VINCENTI Date: Wed Oct 5 11:39:46 2016 +0200 Added ebcancel pusher in particle_pusher_sub routine in particle_push.F90 src/particles_push.F90 commit 54bb7dae13a706b802d52cd42f8c08526be3aba8 Merge: e879651e 2192ce5c Author: Henri VINCENTI Date: Wed Oct 5 11:34:44 2016 +0200 Merge branch 'master' of https://bitbucket.org/berkeleylab/picsar Conflicts: src/particles_push.F90 commit e879651e238686794da9a59439051f72cedfc98b Author: Henri VINCENTI Date: Wed Oct 5 11:30:15 2016 +0200 Fixed indentation pb in particle_push.F90 src/particles_push.F90 commit 2192ce5c8aa57125cd49f07115fdd431fa928222 Merge: 741911af c7dd485b Author: Henri VINCENTI Date: Wed Oct 5 10:53:32 2016 +0200 Merged in picsar_mpi_com_opt (pull request #10) Pull request for the automated tests using shippable commit c7dd485b3690e7b258ba50b7714d2b60b45f0205 Author: mathieu_lobet Date: Tue Oct 4 12:06:34 2016 -0700 corrections in particle_push.F90 for geteb3d_energy_conserving src/particles_push.F90 commit 2c8d787bd94acbc924cde9dee8a8bb65af8491ca Author: mathieu_lobet Date: Tue Oct 4 11:46:58 2016 -0700 Few comments in subroutne geteb3d_energy_conserving src/field_gathering.F90 commit 695808c623ea10aa21025990c7ff8e8759d3c0d7 Merge: 6ed6ce53 741911af Author: mathieu_lobet Date: Tue Oct 4 11:01:27 2016 -0700 Merge branch 'master' of https://bitbucket.org/berkeleylab/picsar commit 6ed6ce533b9cc272bf17fe461d1f764e36e053c5 Author: mathieu_lobet Date: Tue Oct 4 11:01:01 2016 -0700 Add argument field_gathe_algo to geteb3d_energy_conserving Makefile src/field_gathering.F90 commit 741911af6bac175b834d1ed7a4f20723d8fedfb0 Author: Henri VINCENTI Date: Tue Oct 4 16:14:30 2016 +0200 Added particle_pusher flag in modules.90 Added full push Vay src/modules.F90 src/particles_push.F90 commit 07404fe78fcb9defed177b63383611ae8c6d54ba Author: Henri VINCENTI Date: Tue Oct 4 12:30:12 2016 +0200 Changed import warp init tools in LPA_PXR.py (warp.init_tools is now part of warp) python_libs/LPA_PXR.py commit ea44a769a92326e5801446532c78f40772d09243 Author: Remi Lehe Date: Sun Oct 2 07:29:37 2016 -0700 Improved parsing of compile flags configure commit 316b971eeb51796639353471ab2260b88c030d0a Author: Remi Lehe Date: Sat Oct 1 17:59:20 2016 -0700 Added more compilation flags configure commit e560852a46f8d030598bdfbbedaa0373c0beafa0 Author: Remi Lehe Date: Sat Oct 1 17:04:18 2016 -0700 Prevented bug with configure shippable.yml commit 427985906de9a0beadfbcd86397ee4c1bcbf5a1a Author: Remi Lehe Date: Sat Oct 1 16:36:30 2016 -0700 Included Python compilation in the tests shippable.yml commit ec192816098d152cb17446f01e10766eadf58eaf Author: Remi Lehe Date: Sat Oct 1 16:35:22 2016 -0700 Edited the README in accordance INSTALL_PYTHON.md commit df15a0113ae5b8c9d34cfead03161a8eb8045818 Author: Remi Lehe Date: Sat Oct 1 16:32:20 2016 -0700 Added a configure and Makefile_Forthon.in To compile in Python mode: - ./configure - make -f Makefile_Forthon Makefile Makefile_Forthon.in Makefile_debug configure commit 9da56a0511cc1bdfd127b35849eed2558019dbe1 Author: mathieu_lobet Date: Fri Sep 30 19:52:56 2016 -0700 Small changes for shippable Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py shippable.yml commit b3c65204e82cfeba92009b942c19dfacaf6cab67 Author: mathieu_lobet Date: Fri Sep 30 19:33:36 2016 -0700 1) Small corrections 2) Remove test_Langmuir_wave because very slow on Docker Doxygen/pages/input_file_config.txt example_decks_fortran/langmuir_wave.pixr shippable.yml src/particles_push.F90 src/simple_io.F90 commit d493a48b891b81960013a22b0feaef97a319ecc0 Author: mathieu_lobet Date: Fri Sep 30 19:06:47 2016 -0700 Small correction temporal diags init src/diags.F90 src/modules.F90 commit d4e3da86947b331a63a302606f0b20334994abee Author: mathieu_lobet Date: Fri Sep 30 18:28:40 2016 -0700 Disable check divE*eps0 - rho in Fortran test because of strange behaviors, need to be fixed Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py commit 1bb4674e73321cfc23a57ff3264a64151f2fd666 Author: mathieu_lobet Date: Fri Sep 30 18:24:11 2016 -0700 Disable assert temporal diags in Fortran tests Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py commit 9461ef08927e613370ae2f43af295631309c4aee Author: mathieu_lobet Date: Fri Sep 30 18:11:09 2016 -0700 Correction test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py commit f4f2dd44f16cca0ee12fc0d3994aa432d66ba5ae Author: mathieu_lobet Date: Fri Sep 30 18:07:47 2016 -0700 rm *.pyc files and update .gitignore .gitignore Acceptance_testing/Fortran_tests/test_homogeneous_plasma/conftest.pyc Acceptance_testing/Fortran_tests/test_plasma_drift/conftest.pyc commit 79654a8b5d9d51be652f267a3ff5b67ae048bcdb Author: mathieu_lobet Date: Fri Sep 30 17:54:35 2016 -0700 Correction indentation shippable.yml shippable.yml commit 21709bb5a8ffcdc6e06fdbada39ed7f479bb4e00 Author: mathieu_lobet Date: Fri Sep 30 17:51:57 2016 -0700 1) Disable the Python test for shippable Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py Makefile example_scripts_python/test_Langmuir_wave_3d.py python_libs/em3dsolverPXR.py shippable.yml src/diags.F90 commit 708395c240316c6d4805f8626559160958d172a2 Merge: 8b370dec d4f097b6 Author: mathieu_lobet Date: Fri Sep 30 16:27:55 2016 -0700 Merge remote-tracking branch 'origin/master' into automated-tests commit 8b370dec72cc08ab590b8058299ed9c2d2a28c12 Author: mathieu_lobet Date: Fri Sep 30 16:12:57 2016 -0700 1) Update of the Fortran python test scripts to use the correct values for asserts 2) No figure created with the flag show=0 for the shippable tests Note: there is something strange with the computation of the charge, for some reasons, it is for one iteration really huge and then comes back to normal values. Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/conftest.pyc Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/conftest.pyc Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py src/current_deposition.F90 src/diags.F90 src/simple_io.F90 commit 4a2d03d80d01fa62d4efcb1301440e95d884c9b9 Author: mathieu_lobet Date: Fri Sep 30 13:32:34 2016 -0700 Change test_plasma_drift.py to disable figures if show=0 Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py commit d0a4bc9f2972a0964b37351934ff2ebfc6cf90f0 Author: mathieu_lobet Date: Fri Sep 30 13:30:55 2016 -0700 Change test_plasma_drift.py to disable figures if show=0 Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py commit 0e8454fa9dae1eddb657ead443a329f79c9ec4e8 Author: mathieu_lobet Date: Fri Sep 30 11:52:49 2016 -0700 Disable show in test_Langmuir_wave_3d.py example_scripts_python/test_Langmuir_wave_3d.py commit eda39bd32a955920957769c6b0a49c00c22c6ab6 Author: mathieu_lobet Date: Fri Sep 30 11:41:10 2016 -0700 Update shippable.yml for the Python tests shippable.yml commit e83cb8fb366829cb0d7d3e3616b4623c6e0bb6b5 Author: Remi Lehe Date: Fri Sep 30 11:29:31 2016 -0700 Correct path typo in shippable.yml shippable.yml commit 33fdb58064bfeb2b920f273cd1b51e841b36dc58 Author: Remi Lehe Date: Fri Sep 30 11:26:39 2016 -0700 Modified PYTHONPATH in shippable.yml THis is in order to match the folder that Shippable automatically creates when cloning picsar shippable.yml commit 92a31e4ddea48eddd0e04c28e9d7f4a43a581272 Author: mathieu_lobet Date: Fri Sep 30 11:23:32 2016 -0700 Correction for Modules Makefile commit 38ebb1a43774e7bbda406d1dda49e7a7339a0e45 Author: mathieu_lobet Date: Fri Sep 30 11:07:02 2016 -0700 Change in Makefile to create the directory Modules Makefile commit 1c3a7cf158d03d97d520302ae8a1366c89329fa3 Merge: 9cdb62e4 c78f0a76 Author: mathieu_lobet Date: Fri Sep 30 11:05:27 2016 -0700 Merge branch 'automated-tests' of https://bitbucket.org/berkeleylab/picsar into automated-tests commit 9cdb62e475e0b5741654bf23fd055ca10e1f4c8a Author: mathieu_lobet Date: Fri Sep 30 11:02:48 2016 -0700 Minor change in tile_particle_push_3d_test.F90 Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Makefile commit d4f097b686dee39526261906026bb2340c735650 Author: Henri VINCENTI Date: Fri Sep 30 19:01:01 2016 +0200 Changed top.zgrid to em.zgrid python_libs/em3dsolverPXR.py commit b36733911a23aa14e3f35e76f80643a29f6dc296 Author: Henri VINCENTI Date: Fri Sep 30 18:06:44 2016 +0200 Added possibility to use arbitrary order esirkepov even for orders <3. This can be done by using currdepo =/ 0, 1, 2, 3, 4, 5 src/current_deposition.F90 commit e5d9beb581ffc814c1270c3626869b9d5bc0ffd1 Author: Henri VINCENTI Date: Fri Sep 30 18:05:37 2016 +0200 Update of zgrid from WARP to PXR was misplaced and producing different results from warp Now placed at the beginning of the PIC loop (method onestep) python_libs/em3dsolverPXR.py commit 978eb93c37b209eb0bf6f41ae167b956b5b0a22e Author: Henri VINCENTI Date: Fri Sep 30 18:03:49 2016 +0200 Added init of flags l_lower_order_in_v and l4symtry in init method of EM3DSOLVERPXR Class python_libs/em3dsolverPXR.py commit a667ca3706d74821584c6e047e0f114a48d02520 Author: Henri VINCENTI Date: Fri Sep 30 18:02:51 2016 +0200 Added l4symtry and L_lower_order_in_v flag in pxr_pushparticles_part2_sub routine src/particles_push.F90 commit a633743040a22be3aca79e6ec10c8a734a4b07de Author: Henri VINCENTI Date: Fri Sep 30 18:02:21 2016 +0200 Moved l4symtry flag to fields module src/modules.F90 commit e85732f5d26e2bc4927927aa51f9f6095a6b7519 Author: Henri VINCENTI Date: Fri Sep 30 16:10:11 2016 +0200 Corrected error in momenta units Plasma injector init assumes normalized momenta Moments in py_add_particles_to_species in LPA_PXR.py must therefore be multiplied by c This has been changed in this commit python_libs/LPA_PXR.py commit c78f0a769a48192da4cb08f09635321da018b76a Author: Remi Lehe Date: Thu Sep 29 23:36:47 2016 -0700 Added python test shippable.yml commit 001a983f2dd90b0567f728fe680f52376b3fe0d8 Author: mathieu_lobet Date: Thu Sep 29 16:10:03 2016 -0700 Update Unit tests with CALL EXIT(9) Acceptance_testing/Gcov_tests/esirkepov_2d_test.F90 Acceptance_testing/Gcov_tests/esirkepov_3d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_2d_test.F90 Acceptance_testing/Gcov_tests/field_gathering_test.F90 Acceptance_testing/Gcov_tests/rho_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_field_gathering_3d_test.F90 Acceptance_testing/Gcov_tests/tile_mpi_part_com_test.F90 Acceptance_testing/Gcov_tests/tile_particle_push_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 commit 40a452994aeb8a5af23654f04c8a0c09ad532733 Merge: 4c2591cc e9a3ebf3 Author: mathieu_lobet Date: Thu Sep 29 15:28:40 2016 -0700 Merge branch 'picsar_mpi_com_opt' into automated-tests commit 4c2591ccdb1e24c785d4b77919e51d4580b4c472 Author: mathieu_lobet Date: Thu Sep 29 15:27:40 2016 -0700 Add new tests in shippable.yml shippable.yml commit c7e69045c6a93c3f67d5a1abc314f1f79bb00a64 Author: mathieu_lobet Date: Thu Sep 29 15:24:44 2016 -0700 Update script test_plasma_drift.py Acceptance_testing/Fortran_tests/test_plasma_drift/conftest.py Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py commit b5ea0a1f36575cd078afe1e31030c5cece83e387 Author: mathieu_lobet Date: Thu Sep 29 15:17:00 2016 -0700 Correction check divE = rho in test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/conftest.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr shippable.yml src/diags.F90 commit 855556102574bb44756428bb1901aad1dd5cecd4 Merge: 79711598 7eaaa4a1 Author: mathieu_lobet Date: Thu Sep 29 14:23:21 2016 -0700 Merge branch 'automated-tests' of https://bitbucket.org/berkeleylab/picsar into automated-tests commit 797115988aa72b5878eb52311fbaad31a0504a53 Author: mathieu_lobet Date: Thu Sep 29 14:23:06 2016 -0700 Update test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py example_decks_fortran/langmuir_wave.pixr src/control_file.F90 src/diags.F90 src/simple_io.F90 commit 7eaaa4a1c1296480c2783891042d026cb8577920 Author: Remi Lehe Date: Thu Sep 29 11:55:08 2016 -0700 Updated the image to be pulled shippable.yml commit eaae2c4a15a484a6c4912e996c9518667000783a Author: mathieu_lobet Date: Thu Sep 29 11:10:42 2016 -0700 Update shippable.yml Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py shippable.yml commit b834e3280c46151a1290a42cd49c82e12c9bea33 Author: mathieu_lobet Date: Thu Sep 29 10:52:36 2016 -0700 Update of the shippable.yml file Acceptance_testing/Fortran_tests/test_Langmuir_wave/conftest.py Acceptance_testing/Fortran_tests/test_Langmuir_wave/conftest.pyc Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py shippable.yml commit c68f3711dd6b1f5937b0611fbd460e8d2d4ac948 Merge: ec2ae563 23609cc7 Author: mathieu_lobet Date: Thu Sep 29 10:28:25 2016 -0700 Merge branch 'automated-tests' of https://bitbucket.org/berkeleylab/picsar into automated-tests commit ec2ae563defe4066ec0637cb1c0fc214d2b794ae Author: mathieu_lobet Date: Thu Sep 29 10:27:31 2016 -0700 Flag show for the Langmuir wave test script to activate or not Matplotlib Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py commit 23609cc7579c24ec81046dfc2c39e5710937b99b Author: Remi Lehe Date: Thu Sep 29 10:04:00 2016 -0700 Added shippable.yml file shippable.yml commit e9a3ebf33efd71feb680c91b19017c1d95382c70 Author: mathieu_lobet Date: Thu Sep 29 09:57:26 2016 -0700 Change program name in tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 commit c90e1cd9bf51b35873ccd1a2b050e204fb0c923d Merge: 90e9ad20 6892047d Author: Henri VINCENTI Date: Wed Sep 28 22:07:53 2016 +0200 Merge branch 'master' of https://bitbucket.org/berkeleylab/picsar commit 90e9ad2032ccbf12997c82745130f400b1f12007 Author: Henri VINCENTI Date: Wed Sep 28 22:06:09 2016 +0200 Modified MPI_Isend in PXR with double precision buffer count! BEWARE OF ARGUMENT TYPES IN MPI ROUTINES !!!!!!!! src/boundary.F90 commit 6892047d1153e76b8679be3658dec2252feddf8c Merge: 5a7fe38d 0f0273b4 Author: Henri VINCENTI Date: Wed Sep 28 21:57:37 2016 +0200 Merged in improve_doc (pull request #9) Added image explaining the relationship between PICSAR and Warp commit 0f0273b4d7672e818facd58f918dda36ab0ce7bf Author: Remi Lehe Date: Wed Sep 28 09:39:52 2016 -0700 Moved image and corrected README Doxygen/images/warp_and_picsar.png README.md images/warp_and_pxr.png commit 50d50bae8adeb183d5eb21014588a7142e7a46da Merge: ad3206f5 5a7fe38d Author: Remi Lehe Date: Wed Sep 28 09:38:02 2016 -0700 Merge branch 'master' into improve_doc Conflicts: README.md commit 5a7fe38d5da271014484215d19d4eacbd190667c Author: Henri VINCENTI Date: Wed Sep 28 16:40:09 2016 +0200 Modified Mathieu's MPI exchange routines and added moving window paramater zgrid src/boundary.F90 commit 2624722e340b4d29856f9849b4d8104b68b16a15 Author: Henri VINCENTI Date: Wed Sep 28 16:00:33 2016 +0200 Modified MPI blocking and non blocking routines to treat the case when particles exit MPI subdomains exactly along the diagonal and when reflective boundaries are used everywhere (before, just reflexion along one side and then cycled) src/boundary.F90 commit ab4182cae98c52a823dfada82ea88dfa20f13aa8 Author: Henri VINCENTI Date: Wed Sep 28 15:38:44 2016 +0200 Added zgrid parameter (for moving window) to new routines of field gathering, current dep and particle push coming from the merge of picsar_mpi_com_opt on Master. These routines were creating a segfault with LPA type PXR script src/charge_deposition.F90 src/current_deposition.F90 src/field_gathering.F90 src/particles_push.F90 commit a6487c2b5781d1f829929edcfc8874bdcb9099ce Author: Henri VINCENTI Date: Wed Sep 28 15:36:39 2016 +0200 Added rhodepo flag in EM3DPXR to control method used for charge depo in PXR wq python_libs/em3dsolverPXR.py commit eac3e68a8db1c49c2b58128f2b2e55ccedf88e16 Merge: ce515193 7f6c72ef Author: Henri VINCENTI Date: Wed Sep 28 13:39:24 2016 +0200 Merged in picsar_mpi_com_opt (pull request #8) Picsar mpi com opt commit 7f6c72efc8cc2f3d66a5df68cd719041cf2a5c4f Author: mathieu_lobet Date: Tue Sep 27 16:06:07 2016 -0700 Correction README.md README.md commit a49cca684e00c4f08a8885ca71a90645b447b573 Author: mathieu_lobet Date: Tue Sep 27 16:04:49 2016 -0700 Correction README.md README.md commit a3234dc99ec33212c4bb1f5e83805f8b922c9420 Author: mathieu_lobet Date: Tue Sep 27 15:29:36 2016 -0700 Compatibility python 3 for the Fortran tests Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py postproc_python_script/Field.py postproc_python_script/PyLoadArrayPicsar.py utils/forthon_parser.py commit 8650532d31d1674b85e29fa5ea46f970764f4d7f Author: mathieu_lobet Date: Tue Sep 27 14:14:07 2016 -0700 1) Update of the documentation + README.md .gitignore Doxygen/html/Input File Configuration.html Doxygen/html/field__gathering_8_f90.html Doxygen/html/field__gathering_8_f90.js Doxygen/html/globals.html Doxygen/html/globals_func.html Doxygen/html/navtreeindex0.js Doxygen/html/search/all_6.js Doxygen/html/search/functions_6.js Doxygen/latex/Input File Configuration.tex Doxygen/latex/field__gathering_8_f90.tex Doxygen/pages/input_file_config.txt README.md example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr commit 9a99305d1fe13766935e1fbfcb55aa5ea7d85629 Merge: 53f402ce ce515193 Author: mathieu_lobet Date: Tue Sep 27 13:23:36 2016 -0700 Merge with master commit 53f402ce67c2b72f57931ff0fa039019b20eefe9 Author: mathieu_lobet Date: Tue Sep 27 13:07:56 2016 -0700 1) Major improvement of the documentation: new page for the tests, creation of a html file on the root called Documentation.html that redirect to the Doxygen doc, correction of the other pages 2) Update of the makefile .gitignore Documentation.html Doxygen/html/Input File Configuration.html Doxygen/html/Testing.html Doxygen/latex/Input File Configuration.tex Doxygen/latex/Testing.tex Doxygen/pages/input_file_config.txt Doxygen/pages/testing.txt Makefile commit ce515193e9b2562a96e0fb7a4ae5c767bd10d6b6 Author: Henri VINCENTI Date: Tue Sep 27 19:32:01 2016 +0200 For some reasons, for l_first case in onestep(), particle_bcs_tile_2d was called instead of particle_bcs this has been corrected now. python_libs/em3dsolverPXR.py commit 9858bc844f98606c7bf1acd4ec28c64591c3350b Author: Henri VINCENTI Date: Tue Sep 27 19:30:35 2016 +0200 Added case where nspecies=0 in particle_bcs_tiles_and_mpi_3d. If nspecies =0, nthreads_loop1=0 and this created a runtime error. Now if nspecies=0, the subroutine returns src/boundary.F90 commit 07af7eb189bb6f1a7389db841905a0cc378b7e0a Author: Henri VINCENTI Date: Tue Sep 27 18:30:17 2016 +0200 Fixed compilation error with last version of PXR buffer count argument of MPI_Isend routines were INTEGER8 (instead of INTEGER4) creating error at compile time A cast to isp was done to fix this src/boundary.F90 commit 48ab9e6e14e87a4edfb2db3034e18b1eae1afc79 Author: Henri VINCENTI Date: Tue Sep 27 18:09:50 2016 +0200 Corrected a bug in PXR for nspecies=0. in all particle routines. In some parts of the code, the aliasing curr=>species_parray(1) hard coded was creating a segfault when nspecies=0. Now, if nespecies=0, particle subroutines immediately return avoiding this error. src/charge_deposition.F90 src/current_deposition.F90 src/field_gathering.F90 src/particles_push.F90 src/tiling.F90 commit eef6fe082711b764d3bb8e4a52b18d0cce3e4ead Author: mathieu_lobet Date: Mon Sep 26 18:02:11 2016 -0700 1) Update and improvement of the Doxygen documentation with the creation of a new page "Testing" and many other corrections. 2) Minor corrections .gitignore Doxygen/html/Fortran installation instructions.html Doxygen/html/Python installation instructions.html Doxygen/html/Testing.html Doxygen/html/charge__deposition_8_f90.html Doxygen/html/charge__deposition_8_f90.js Doxygen/html/charge_deposition_grid.jpg Doxygen/html/current__deposition_8_f90.html Doxygen/html/globals.html Doxygen/html/globals_func.html Doxygen/html/modules_8_f90.html Doxygen/html/modules_8_f90.js Doxygen/html/namespacemembers_func.html Doxygen/html/namespacemembers_s.html Doxygen/html/namespacemembers_vars_z.html 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Doxygen/latex/namespaceshared__data.tex Doxygen/latex/namespacetiling.tex Doxygen/latex/refman.tex Doxygen/latex/testing_8txt.tex Doxygen/latex/tiling_8_f90.tex Doxygen/pages/install_fortran.txt Doxygen/pages/install_python.txt Doxygen/pages/testing.txt Makefile src/charge_deposition.F90 utils/forthon_parser.py commit ec78aae65abc3e651fda25b321686d2078967d0a Author: mathieu_lobet Date: Mon Sep 26 16:34:43 2016 -0700 1) Minor change to the test rho_deposition_3d_test Acceptance_testing/Gcov_tests/rho_deposition_3d_test.F90 commit 71c845b870eb8a493f8a75612cbecbc73914ca7e Merge: 6999ca96 8f439124 Author: mathieu_lobet Date: Mon Sep 26 16:26:48 2016 -0700 Merge with master commit 6999ca96323921ac4b0f24605fa2f505054ed375 Author: mathieu_lobet Date: Mon Sep 26 16:23:04 2016 -0700 minor change src/charge_deposition.F90 commit 447de6508bc3470c72623b21829f145bc90bb944 Author: mathieu_lobet Date: Mon Sep 26 16:19:44 2016 -0700 1) New test for the charge deposition called rho_deposition_3d_test in Gcov_test Acceptance_testing/Gcov_tests/rho_deposition_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 Makefile src/charge_deposition.F90 src/current_deposition.F90 src/tiling.F90 commit ad3206f59e635b70a9bd6dfda9f6550e63778a8d Author: Remi Lehe Date: Mon Sep 26 14:02:07 2016 -0700 Attempted to change size of image README.md commit 96cf3ebe448f7e20defdcf9905290c8da4d9d34f Author: Remi Lehe Date: Mon Sep 26 13:58:34 2016 -0700 Added text in relation to the image README.md commit f55c3ed2a0297ca298753d252c19eb5761cb5e2b Author: Remi Lehe Date: Mon Sep 26 13:41:50 2016 -0700 Added image to explain link between Warp and PICSAR README.md images/warp_and_pxr.png commit 8f439124add12d6fc7e3a67d5dc1098b2fb6ef3c Merge: 391765a6 56be944d Author: Henri VINCENTI Date: Mon Sep 26 18:01:12 2016 +0200 Merge branch 'picsar_mpi_com_opt' Conflicts: python_libs/em3dsolverPXR.py src/boundary.F90 src/current_deposition.F90 src/diags.F90 src/modules.F90 src/particles_push.F90 src/tiling.F90 Modifications: removed extra argument l_low_order_in_v in field_gathering_plus_particle_pusher_..._2d commit 391765a6f78d38ccf711e9073b9165016a3a524b Merge: a8ea6b4a 63b8025b Author: Henri VINCENTI Date: Mon Sep 26 14:18:30 2016 +0200 Merged in mathieu_lobet/readmemd-edited-online-with-bitbucket-1467754088349 (pull request #6) README.md edited online with Bitbucket commit a8ea6b4a88b5cedd6731a8b66c0d9968f88189a5 Merge: e1930a73 27b139f8 Author: Henri VINCENTI Date: Mon Sep 26 14:16:51 2016 +0200 Merged in better_doc_edison (pull request #7) Added installation instructions for Edison commit 1d6d4db849b2b0ba991f1e78b6306224f69a10a8 Author: mathieu_lobet Date: Fri Sep 23 18:31:27 2016 -0700 minor changes src/charge_deposition.F90 commit 56be944d19ede18d44d641640d24b08de328c5ae Author: mathieu_lobet Date: Fri Sep 23 12:16:57 2016 -0700 1) Indentation + little change in depose_rho_vecHVv2_1_1_1 Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 Doxygen/html/Input File Configuration.html Doxygen/html/boundary_8_f90.html Doxygen/html/boundary_8_f90.js Doxygen/html/charge__deposition_8_f90.html Doxygen/html/charge__deposition_8_f90.js Doxygen/html/globals.html Doxygen/html/globals_func.html Doxygen/html/namespaceboundary.html Doxygen/html/namespacemembers_func.html Doxygen/html/namespacemembers_p.html Doxygen/html/navtreedata.js Doxygen/html/navtreeindex0.js Doxygen/html/navtreeindex1.js Doxygen/html/navtreeindex2.js Doxygen/html/navtreeindex3.js Doxygen/html/search/all_e.js Doxygen/html/search/functions_c.js Doxygen/latex/Input File Configuration.tex Doxygen/latex/boundary_8_f90.tex Doxygen/latex/charge__deposition_8_f90.tex Doxygen/latex/namespaceboundary.tex Doxygen/pages/input_file_config.txt Makefile src/boundary.F90 src/charge_deposition.F90 src/control_file.F90 src/current_deposition.F90 src/field_gathering_3d_o1.F90 src/field_gathering_3d_o3.F90 src/particles_push.F90 commit e718fcef74fe0dd0ef3e311df5194c1f19854e07 Author: mathieu_lobet Date: Wed Sep 14 22:20:22 2016 -0700 1) Correction particle exchange: particle_bcs_tiles_and_mpi_3d 2) Update Doxygen doc: input file configuration Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Doxygen/html/Configuration.html Doxygen/html/Input File Configuration.html Doxygen/html/Input.html Doxygen/html/_formulas.tex Doxygen/html/boundary_8_f90.html Doxygen/html/boundary_8_f90.js Doxygen/html/charge__deposition_8_f90.html Doxygen/html/charge__deposition_8_f90.js Doxygen/html/current__deposition_8_f90.html Doxygen/html/current__deposition_8_f90.js Doxygen/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html Doxygen/html/globals.html Doxygen/html/globals_func.html Doxygen/html/globals_vars.html 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Doxygen/pages/input_file_config.txt Doxygen/pages/mainpage.txt Makefile src/boundary.F90 src/charge_deposition.F90 src/control_file.F90 src/current_deposition.F90 src/field_gathering.F90 src/submain.F90 commit 0d712d26ee748c231afbc1f41bd6125f863289cb Author: mathieu_lobet Date: Wed Sep 14 10:38:24 2016 -0700 1) New test for the charge deposition tile_rho_depo_3d_test.F90 2) Few adds in the Doxygen documentation 3) Update Makefile Acceptance_testing/Gcov_tests/tile_curr_depo_3d_test.F90 Acceptance_testing/Gcov_tests/tile_rho_depo_3d_test.F90 Doxygen/html/charge__deposition_8_f90.html Doxygen/latex/charge__deposition_8_f90.tex Makefile src/charge_deposition.F90 commit ea444bb64477102715fccb8e46953c68c9f6b480 Author: mathieu_lobet Date: Tue Sep 13 16:56:56 2016 -0700 1) Creation of a file charge_deposition.F90 to contain the charge deposition subroutine that were before in diags.F90. 2) Improvement of the Doxygen documentation for the charge deposition subroutines 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Doxygen/html/search/functions_c.js Doxygen/latex/charge__deposition_8_f90.tex Doxygen/latex/diags_8_f90.tex Doxygen/latex/dir_ac6e020b6b32a70d908ee7b905aad867.tex Doxygen/latex/files.tex Doxygen/latex/namespacediagnostics.tex Doxygen/latex/refman.tex Makefile Makefile_profiling example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr src/charge_deposition.F90 src/diags.F90 utils/forthon_parser.py commit bdb92c33ceb6570d61d2bdc8cd5b3c093a529d3a Author: mathieu_lobet Date: Tue Sep 13 09:41:38 2016 -0700 1) Correction for the python version 2) Addition of the installation instructions to the Doxygen documentation Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Doxygen/html/Fortran installation instructions.html Doxygen/html/Input File Configuration.html Doxygen/html/Python installation instructions.html 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Doxygen/latex/Fortran installation instructions.tex Doxygen/latex/Input File Configuration.tex Doxygen/latex/Python installation instructions.tex Doxygen/latex/boundary_8_f90.tex Doxygen/latex/field__gathering__3d__o1_8_f90.tex Doxygen/latex/field__gathering__3d__o2_8_f90.tex Doxygen/latex/field__gathering__3d__o3_8_f90.tex Doxygen/latex/install__fortran_8txt.tex Doxygen/latex/install__python_8txt.tex Doxygen/latex/modules_8_f90.tex Doxygen/latex/namespaceboundary.tex Doxygen/latex/namespaceoutput__data.tex Doxygen/latex/namespaces.tex Doxygen/latex/particles__push_8_f90.tex Doxygen/latex/refman.tex Doxygen/mainpage.txt Doxygen/pages/input_file_config.txt Doxygen/pages/install_fortran.txt Doxygen/pages/install_python.txt Makefile src/boundary.F90 src/field_gathering_3d_o1.F90 src/modules.F90 src/particles_push.F90 utils/forthon_parser.py commit 1a7918f2a82a2a96dd95d246d828c625d6177264 Author: mathieu_lobet Date: Mon Sep 12 16:17:00 2016 -0700 1) Modification of the gcov tests with 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52bf92d4c1a953fb0abf127e6770d7a2182488cb Author: mathieu_lobet Date: Thu Aug 18 18:56:49 2016 -0700 1) Correction code for compatibility with Forthon, 2) Correction of the parser to take into account the directives, 3) Modif Em3dsolverPXR.py for lvec_field_gathering, 4) Update python scritps for test Langmuir Wave Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py Doxygen/html/field__gathering_8_f90.html Doxygen/html/modules_8_f90.html Doxygen/html/namespaceconstants.html Doxygen/html/particles__push_8_f90.html Doxygen/latex/field__gathering_8_f90.tex Doxygen/latex/modules_8_f90.tex Doxygen/latex/namespaceconstants.tex Doxygen/latex/particles__push_8_f90.tex example_scripts_python/test_Langmuir_wave_3d.py python_libs/em3dsolverPXR.py src/current_deposition.F90 src/diags.F90 src/field_gathering.F90 src/modules.F90 src/particles_push.F90 src/sorting.F90 utils/forthon_parser.py commit 2f91c41c313e9240929422017ba96da050e51664 Author: mathieu_lobet Date: Wed Aug 17 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Doxygen/latex/structgrid__tilemodule_1_1grid__tile.tex Doxygen/latex/structmatrix__coefficients_1_1block3d.tex Doxygen/latex/structmatrix__coefficients_1_1matrix__blocks.tex Doxygen/latex/structmatrix__coefficients_1_1vector__blocks.tex Doxygen/latex/structoutput__data_1_1particle__dump.tex Doxygen/latex/structparticle__speciesmodule_1_1particle__species.tex Doxygen/latex/structparticle__tilemodule_1_1particle__tile.tex Doxygen/latex/submain_8_f90.tex Doxygen/latex/tiling_8_f90.tex Doxygen/mainpage.txt Doxygen/pages/input_file_config.txt Doxygen/pages/mainpage.txt src/boundary.F90 src/current_deposition.F90 src/diags.F90 src/main.F90 src/modules.F90 src/sorting.F90 commit b81efe919e038d95a6deb68fcfd4226f3a668256 Author: mathieu_lobet Date: Thu Aug 11 17:08:10 2016 -0500 Addition test current deposition, Correction small bugs Acceptance_testing/Gcov_tests/field_gathering_3d_test Acceptance_testing/Gcov_tests/field_gathering_3d_test.dSYM/Contents/Resources/DWARF/field_gathering_3d_test Acceptance_testing/Gcov_tests/field_gathering_test.F90 Makefile src/boundary.F90 src/current_deposition.F90 src/current_deposition_2d.F90 src/diags.F90 src/mpi_routines.F90 src/submain.F90 commit b8661c6812a30dec46a02948c3506470af5bed5b Author: mathieu_lobet Date: Wed Aug 10 19:15:22 2016 -0500 Correction field gathering order 2, correction current deposition min/max for Mira/Vesta Acceptance_testing/Gcov_tests/field_gathering_3d_test Acceptance_testing/Gcov_tests/field_gathering_3d_test.dSYM/Contents/Resources/DWARF/field_gathering_3d_test Acceptance_testing/Gcov_tests/field_gathering_test.F90 Makefile src/control_file.F90 src/current_deposition.F90 src/current_deposition_2d.F90 src/field_gathering.F90 src/particles_push.F90 utils/write_current_dep_esirkepov_2d.py utils/write_current_dep_esirkepov_3d.py utils/write_current_dep_esirkepov_vect_3d.py utils/write_gathering_routines_2d.py utils/write_gathering_routines_3d.py commit f253648f38d1e30b1bb6b92571a6ce5aa2c18d17 Author: mathieu_lobet Date: Tue Aug 9 16:04:41 2016 -0500 1) Important bug correction in field_gathering.F90: projection of the electric field for some subroutines. 2) Addition of new validation tests in Fortran to test specific parts of the code, field gathering in 3D is implemented. Tests are located in Acceptance_testing/Gcov_tests Acceptance_testing/Gcov_tests/field_gathering_3d_test Acceptance_testing/Gcov_tests/field_gathering_3d_test.dSYM/Contents/Info.plist Acceptance_testing/Gcov_tests/field_gathering_3d_test.dSYM/Contents/Resources/DWARF/field_gathering_3d_test Acceptance_testing/Gcov_tests/field_gathering_test.F90 Makefile Makefile_profiling src/boundary.F90 src/current_deposition.F90 src/field_gathering.F90 src/particles_push.F90 tools/write_gathering_routines_3d.py utils/forthon_parser.py commit 09349b3306a2b64a44b4b6c62b07236fc7eb356b Author: mathieu_lobet Date: Fri Jul 29 21:08:44 2016 -0700 Update profiling possibilities with SDE, VTUNE and ALLINEA MAP Makefile Makefile_debug Makefile_profiling src/api_fortran_itt.c src/api_fortran_sde.c src/current_deposition.F90 src/diags.F90 src/field_gathering.F90 src/itt_fortran.F90 src/main.F90 src/mpi_routines.F90 src/particles_push.F90 src/sde_fortran.F90 src/submain.F90 commit 02361f099917aac85f1c7fd5ad3f24bbd710749e Author: mathieu_lobet Date: Mon Jul 25 13:46:13 2016 -0700 Correction little bugs DFP src/itt_sde_fortran.F90 src/submain.F90 commit ddc6373785027c1c7261a4b771fb79fefd7722bf Author: mathieu_lobet Date: Mon Jul 25 13:44:02 2016 -0700 Correction little bugs src/boundary.F90 src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/field_gathering.F90 src/maxwell.F90 src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 src/simple_io.F90 src/sorting.F90 src/submain.F90 commit 8482d172b655f2b61cb1b1aa31fa4c8c51fd1458 Author: mathieu_lobet Date: Fri Jul 22 15:42:11 2016 -0700 New function for the Design Forward project with Intel src/api_fortran_itt.c src/current_deposition_2d.F90 src/itt_sde_fortran.F90 src/main.F90 src/submain.F90 utils/forthon_parser.py commit 2fb50f487baa58b337804a0c755ccacc38eecd85 Merge: 3486c9ed c3e68200 Author: mathieu_lobet Date: Fri Jul 22 09:33:22 2016 -0700 Merge with Master commit 3486c9ed7e28397c131517d478ee437777998c1b Author: mathieu_lobet Date: Fri Jul 22 09:28:10 2016 -0700 Creation particle_pusher_2d.F90, Update field gathering + particle pusher Makefile Makefile_debug Makefile_profiling python_libs/em3dsolverPXR.py src/boundary.F90 src/control_file.F90 src/current_deposition.F90 src/current_deposition_2d.F90 src/field_gathering.F90 src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 src/particles_push_2d.F90 src/submain.F90 src/tiling.F90 tools/write_current_dep_esirkepov_2d.py tools/write_current_dep_esirkepov_vect_3d.py commit c3e682008e5cd902cfde02c8be0bc8d0144ec60a Author: Henri Vincenti Date: Wed Jul 20 16:39:17 2016 -0700 fixed bug in sendbuff size nbuff -> nbuff*nvar src/boundary.F90 commit e35cd64a4f8ac294871c1ea970f88ad0d8a2732d Author: Henri Vincenti Date: Tue Jul 19 10:05:15 2016 -0700 Modified a bug in boundary.F90 python_libs/em3dsolverPXR.py src/boundary.F90 src/control_file.F90 commit f11d8f8c2ca1fd26089135b2d67a3d79b2bb50c3 Author: mathieu_lobet Date: Tue Jul 5 21:37:05 2016 -0700 Creation file field_gathering_2d.F90, Update maxwell.F90 Makefile Makefile_debug src/field_gathering.F90 src/field_gathering_2d.F90 src/maxwell.F90 utils/forthon_parser.py commit 62775391758e910777c364befb046a5478b24475 Author: mathieu_lobet Date: Tue Jul 5 17:57:01 2016 -0700 Creation file current_deposition_2d.F90, Update Esirkepov order 1 in 2D, Update Maxwell.F90 Makefile src/current_deposition.F90 src/current_deposition_2d.F90 src/maxwell.F90 src/submain.F90 tools/write_current_dep_esirkepov_2d.py utils/forthon_parser.py commit 63b8025b57fdb0d1a818f45eff5553a81b7cd5a5 Author: mathieu lobet Date: Tue Jul 5 23:10:48 2016 +0000 README.md edited online with Bitbucket README.md commit 0cff325b657e9272ac82103099b73755083f48c0 Author: mathieu lobet Date: Tue Jul 5 23:06:42 2016 +0000 README.md edited online with Bitbucket README.md commit 0264c9275b3c7db9b22fede66ee576b414ad6406 Author: mathieu lobet Date: Tue Jul 5 23:03:51 2016 +0000 README.md edited online with Bitbucket README.md commit d4a0754925df847f811a45cd0b18100b8ced6ae5 Author: mathieu lobet Date: Tue Jul 5 22:50:38 2016 +0000 README.md edited online with Bitbucket README.md commit 65249cff0b9631247825a5b3ea161c63679b8779 Author: mathieu lobet Date: Tue Jul 5 22:50:07 2016 +0000 README.md edited online with Bitbucket README.md commit c937f9c7e9322f9aceb4b5033690abb85f8524d5 Author: mathieu lobet Date: Tue Jul 5 22:49:28 2016 +0000 README.md edited online with Bitbucket README.md commit 67add8cd2c944c8f45dfe08553097e5c6708b33f Author: mathieu lobet Date: Tue Jul 5 22:48:34 2016 +0000 README.md edited online with Bitbucket README.md commit 64c68136df92f0fc6f1ea8ce9166cd332aa8c437 Author: mathieu lobet Date: Tue Jul 5 22:47:27 2016 +0000 README.md edited online with Bitbucket README.md commit d253b90b42000ace3e2e79f213c45bb4ab4a2b99 Author: mathieu lobet Date: Tue Jul 5 22:32:17 2016 +0000 README.md edited online with Bitbucket README.md commit 05ecfb071b3dbfca7ab39efdc69e4707988a3f45 Author: mathieu lobet Date: Tue Jul 5 22:31:54 2016 +0000 README.md edited online with Bitbucket README.md commit a2421921d6262323b26c1c2ef4d69f1412aae9f8 Author: mathieu lobet Date: Tue Jul 5 22:23:22 2016 +0000 README.md edited online with Bitbucket README.md commit fbbd783dae48a8c642d2fccc405b1d1747d72200 Author: mathieu lobet Date: Tue Jul 5 22:08:40 2016 +0000 README.md edited online with Bitbucket README.md commit d29c4334c86661839db86b6e63462f621eb62f16 Author: mathieu lobet Date: Tue Jul 5 22:07:53 2016 +0000 README.md edited online with Bitbucket README.md commit 6359ca84bcd5b347d4b4a8e1ce8f3be5b91e47b3 Author: mathieu lobet Date: Tue Jul 5 21:50:18 2016 +0000 README.md edited online with Bitbucket README.md commit 69b3ab351f27bdca9ee4ff9c8192fbbddb7fe56c Author: mathieu lobet Date: Tue Jul 5 21:38:51 2016 +0000 README.md edited online with Bitbucket README.md commit 9918746f2eee0feab87dd135c428a935cdb708e3 Author: mathieu lobet Date: Tue Jul 5 21:31:17 2016 +0000 README.md edited online with Bitbucket README.md commit 2a0feca1a851344efa1f7d5b3e44d64713982c12 Author: mathieu lobet Date: Tue Jul 5 21:28:11 2016 +0000 README.md edited online with Bitbucket README.md commit f4da71e446a2214b3fe3530c4ec39d4589aaead5 Author: Henri Vincenti Date: Tue Jul 5 13:33:24 2016 -0700 Removed comments !! in print statement in control_file.F90 src/control_file.F90 commit d4049911f6f7e4ecf469c9b02476018b849c90fa Author: mathieu_lobet Date: Tue Jul 5 13:11:33 2016 -0700 Small updates in Esirkepov 2d src/current_deposition.F90 commit a6b745c5b121d5df25f047dc2a20391522aaabe2 Author: mathieu_lobet Date: Tue Jul 5 11:38:45 2016 -0700 Update: Esirkepov sequential optimized order 2 src/current_deposition.F90 src/submain.F90 tools/write_current_dep_esirkepov_2d.py commit 07ca1b8b9bba1db908ce72585950695e245bd4a3 Merge: 222876af 8dc41485 Author: mathieu_lobet Date: Sat Jul 2 21:28:24 2016 -0700 Merge remote-tracking branch 'origin/picsar_mpi_com_opt' into Picsar2D commit 222876af8c176fac40ad1c1b27fbe2078ece1c29 Author: mathieu_lobet Date: Sat Jul 2 21:28:02 2016 -0700 Update Esirkepov 2d order 2, update diags 2d python_libs/em3dsolverPXR.py src/boundary.F90 src/current_deposition.F90 src/diags.F90 src/tiling.F90 commit 8dc41485ca2fa9843234b37453bf4bf758e52ee2 Author: mathieu_lobet Date: Fri Jul 1 15:36:12 2016 -0700 Small updates src/mpi_routines.F90 src/particles_push.F90 tools/write_current_dep_esirkepov_2d.py commit 12aa59ed8a907aa9fa866646f693ae4bb4921c5b Author: mathieu_lobet Date: Fri Jul 1 15:22:52 2016 -0700 Update current deposition with esirkepo 2d order 3 and pxrdepose_currents_on_grid_jxjyjz_2d src/current_deposition.F90 commit 6252a46b9c221f3e40ca3c3624b21014392433a7 Merge: 5f30e537 6e1aa24d Author: mathieu_lobet Date: Thu Jun 30 18:05:17 2016 -0700 Merge with origin/picsar_mpi_com_opt commit 5f30e537f50c2043455339877d145e6463880709 Author: mathieu_lobet Date: Thu Jun 30 17:57:46 2016 -0700 Update communication 2d, Update current deposition 2d src/boundary.F90 src/current_deposition.F90 src/submain.F90 src/tiling.F90 commit 6e1aa24dc9e04a6b1c7f0c6ccf115a7135992f4b Author: mathieu_lobet Date: Thu Jun 30 16:00:10 2016 -0700 Add write_current_dep_esirkepov_2d.py tools/write_current_dep_esirkepov_2d.py commit 04136dce027a451530a7ee91faeda11212cab646 Author: mathieu_lobet Date: Thu Jun 30 15:59:35 2016 -0700 Update initialization, Update particle pusher 2d src/control_file.F90 src/particles_push.F90 src/submain.F90 src/tiling.F90 commit a79f059cee2be29c325b37be5d248bc36a4ac726 Author: mathieu_lobet Date: Thu Jun 30 15:56:47 2016 -0700 Correction time statisctics, Update current deposition src/current_deposition.F90 src/mpi_routines.F90 commit 293c2bd21b24c769a8579a236bc367ddc486b5e5 Author: mathieu_lobet Date: Wed Jun 29 20:05:40 2016 -0700 Update em3dsolverPXR, update field gathering: vectorized function order 3 in 2d example_scripts_python/ion_acceleration.py python_libs/em3dsolverPXR.py src/boundary.F90 src/current_deposition.F90 src/field_gathering.F90 src/particles_push.F90 src/simple_io.F90 commit 20cfc3444e517f184667d3ea826e091629bc058e Author: mathieu_lobet Date: Tue Jun 28 20:05:23 2016 -0700 Addition: folder tools with linearization python scripts src/current_deposition.F90 tools/write_current_dep_esirkepov_3d.py tools/write_gathering_routines_2d.py tools/write_gathering_routines_3d.py commit 07fc4d4436f0d0b386010e703df8c7604776f6a4 Author: mathieu_lobet Date: Tue Jun 28 19:48:37 2016 -0700 Major correction: optimized 3d field gathering routines to take into account lower_order_in_v + bug corrections src/control_file.F90 src/field_gathering.F90 src/particles_push.F90 commit c003fb0e0e941ba07d8e6625e82c0cc0961a7031 Author: mathieu_lobet Date: Mon Jun 27 17:54:05 2016 -0700 Addition Makefile_profiling Makefile_profiling commit 75591493d8ec6ce1514f69bb642c96a04a9bc76c Author: mathieu_lobet Date: Mon Jun 27 17:52:39 2016 -0700 Update Esikepov vectorized order 2, Update time statistics src/boundary.F90 src/current_deposition.F90 src/modules.F90 src/mpi_routines.F90 src/submain.F90 commit 900d5f4f497017dd927aabaa938ad0566c29395c Author: mathieu_lobet Date: Mon Jun 27 09:45:59 2016 -0700 Update Esirkepov vectorized order 1 => now working Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr example_decks_fortran/homogeneous_plasma.pixr src/boundary.F90 src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/field_gathering.F90 src/modules.F90 src/mpi_routines.F90 src/sorting.F90 src/submain.F90 src/tiling.F90 commit c3c15d44694f020ae485cf603311af8404a4866a Merge: fe335a38 1594386b Author: mathieu_lobet Date: Wed Jun 22 12:03:52 2016 -0700 Merge branch 'picsar_mpi_com_opt' of https://bitbucket.org/berkeleylab/picsar into picsar_mpi_com_opt commit fe335a38e0b9489ba5494ae150799df94b7b6368 Author: mathieu_lobet Date: Wed Jun 22 11:55:59 2016 -0700 Update Optimized Esirkepov order 1, update field gathering Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr src/current_deposition.F90 src/field_gathering.F90 src/simple_io.F90 commit 1594386bb07de97ab8d844593cae48a027f160e0 Author: HENRI VINCENTI Date: Tue Jun 21 09:21:38 2016 +0000 Modified syntax of MIN/MAX for IBM compiler on MIRA src/boundary.F90 src/control_file.F90 commit f5a676c6687c5d73934f1d1402d557b409707a3a Author: mathieu_lobet Date: Fri Jun 17 14:06:22 2016 -0700 Simple corrections src/simple_io.F90 commit 7cfd61b92c70bc2ad226d8b82d09b494abed6de5 Merge: 4ea5166e 43d9e525 Author: mathieu_lobet Date: Fri Jun 17 14:01:53 2016 -0700 Merge remote-tracking branch 'origin/master' into picsar_mpi_com_opt commit 4ea5166e6f90683f4731eeaf3873368629eb5941 Author: mathieu_lobet Date: Fri Jun 17 13:54:49 2016 -0700 Update simple-io: header with array parameters in the file, update of the python scripts: new class Field to read field diagnostics, update of plot_picsar_field.py to visualize the field arrays, update of the acceptance testing scripts Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr postproc_python_script/Field.py postproc_python_script/plot_field_picsar.py src/diags.F90 src/modules.F90 src/simple_io.F90 src/submain.F90 commit fadc6ef07c7d7b0174d6786391376f241f269982 Author: mathieu_lobet Date: Thu Jun 16 15:22:21 2016 -0700 Update for python: all fortran optimizations included in 3d Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py example_scripts_python/test_Langmuir_wave_3d.py python_libs/em3dsolverPXR.py src/boundary.F90 src/current_deposition.F90 commit 43d9e525df93522422abe24fcddbb3eda64ca774 Author: Henri Vincenti Date: Thu Jun 16 13:51:24 2016 -0700 Corrected bug mira src/diags.F90 src/simple_io.F90 commit 76287bf2392e6318c2d1072f8e2fea7f3ddaa088 Author: HENRI VINCENTI Date: Thu Jun 16 20:31:15 2016 +0000 MIRA comments io src/diags.F90 src/simple_io.F90 commit c8d4f2af3c75775949e4442dcfd5e0cf61a9afaf Author: mathieu_lobet Date: Thu Jun 16 11:24:35 2016 -0700 Bug correction particle sorting with python Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py example_scripts_python/test_Langmuir_wave_3d.py python_libs/em3dsolverPXR.py src/sorting.F90 commit 2af29b964c77c325d3cce409b5229da2b9b39e8d Merge: cd623098 e1e2aef0 Author: mathieu_lobet Date: Wed Jun 15 15:20:05 2016 -0700 Merge with Master + bug corrections commit cd623098a1886bb7ee7ee3b923266a96309f8c19 Author: mathieu_lobet Date: Mon Jun 13 16:54:31 2016 -0700 Update before commit Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Acceptance_testing/Python_tests/test/test.py Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py Makefile_Forthon example_decks_fortran/drifted_plasma.pixr example_decks_fortran/langmuir_wave.pixr example_scripts_python/em3dsolverPXR.py example_scripts_python/test_Langmuir_wave_3d.py src/boundary.F90 src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/field_gathering.F90 src/maxwell.F90 src/modules.F90 src/mpi_routines.F90 src/simple_io.F90 src/submain.F90 src/tiling.F90 commit e1e2aef05a1119629a7eaf54d670f762eaaddd55 Author: Henri VINCENTI Date: Mon Jun 13 14:02:51 2016 -0700 Added case when norder/2>nguard for arbitrary order Maxwell Solver Removed print statements in submain.F90 src/maxwell.F90 src/submain.F90 commit a9f1f005622022d969da1f3a45777a07dd63ab04 Author: Henri VINCENTI Date: Sat Jun 11 14:56:05 2016 -0700 added comments in initall src/submain.F90 commit 8e712e421b55e648a967d97133d2c0411fdaaa97 Author: Henri VINCENTI Date: Sat Jun 11 11:35:59 2016 -0700 Changes for openmp test MIRA src/submain.F90 commit a473d25b74d5d34e3821c0a33deee69e94a2e05f Merge: 58b46dc8 64e1416b Author: Henri Vincenti Date: Fri Jun 10 18:39:37 2016 -0700 Merge branch 'master' of https://bitbucket.org/berkeleylab/picsar commit 58b46dc81d1308c9d4e0e7df97dd1e73b186494e Merge: 0b783f6f d6e5aabc Author: Henri Vincenti Date: Fri Jun 10 18:39:06 2016 -0700 Merge branch 'picsar_parr_io' commit 64e1416bd872bab2e95563119df3bb09d4629f04 Merge: 64c57b10 0b783f6f Author: HENRI VINCENTI Date: Sat Jun 11 01:02:28 2016 +0000 Merge branch 'master' of https://bitbucket.org/berkeleylab/picsar commit 64c57b101055b1ecf5cf17bc87e70f106a583332 Author: HENRI VINCENTI Date: Sat Jun 11 00:57:49 2016 +0000 Added MPI_INTEGER8 in ALLREDUCE for getting number of particles src/tiling.F90 commit 0b783f6f3776f7de7ad931be3455dcbebcc1dda5 Author: Henri Vincenti Date: Fri Jun 10 17:54:46 2016 -0700 Corrected bug in particle non blocking MPI src/boundary.F90 commit d6e5aabccda0cf4897b4a5b5c8ff37ef680bd172 Author: Henri Vincenti Date: Fri Jun 10 16:57:26 2016 -0700 Added parallel io to this branch src/control_file.F90 src/modules.F90 src/simple_io.F90 src/submain.F90 commit b00b68fca34368372f418e54a1fcade81c8d112c Author: Henri VINCENTI Date: Fri Jun 10 13:01:43 2016 -0700 Replaced __bg__ src/current_deposition.F90 src/diags.F90 commit a07a84942b41cdee6c6be7a8ccea803bfbe9570f Author: HENRI VINCENTI Date: Fri Jun 10 03:42:29 2016 +0000 Added idp kind to nst in submain.F9à src/submain.F90 commit 1f13eed579aad3226cb103dec4dae05fb4765bdd Author: Henri VINCENTI Date: Thu Jun 9 15:51:12 2016 -0700 Replaced REALPART by REAL and IMAGPART by AIMAG in GPSTD.F90 src/GPSTD.F90 commit aa48db8a6167a66fb329741fa5160cb2e9d3e58d Author: Henri VINCENTI Date: Thu Jun 9 15:45:46 2016 -0700 Added type def in call to add_particle_at_tile src/load_balancing.F90 commit de0613660e673f15f88ae1b09d9cc12358356ae2 Author: Henri VINCENTI Date: Thu Jun 9 15:43:57 2016 -0700 Added KIND in FLOOR src/load_balancing.F90 commit 38573f9c1e1a0263c8ac340c341c8a25ef869058 Author: Henri VINCENTI Date: Thu Jun 9 15:42:10 2016 -0700 Added KIND precision for MAX INTRINSIC Func args src/load_balancing.F90 commit 2569f88086d408cb26bf3a3ffa305cca6be9c69e Author: Henri VINCENTI Date: Thu Jun 9 15:30:06 2016 -0700 Added private variables to OpenMP parallel regions for bcs openmp 2D src/boundary.F90 commit b7fccb19ea1bcdc0274c74a41dd993967c326cfa Author: Henri VINCENTI Date: Thu Jun 9 15:27:33 2016 -0700 Added definitions of private variables in first OMP PARALLEL REGIONS src/boundary.F90 commit 1bbd6a7c23dd162b5c2adaf15e3a444c241c843d Author: Henri VINCENTI Date: Thu Jun 9 15:21:58 2016 -0700 Added pre-processor directives to missing routines in current_dep.F90 src/current_deposition.F90 commit 5a98a86984fc4b3b38f93c6b1783227fa0dace58 Author: Henri VINCENTI Date: Thu Jun 9 15:09:52 2016 -0700 Added all compiler SIMD directives for IBM, INTEL and OPENMP in current_deposition.F90 and diags.F90 src/current_deposition.F90 src/diags.F90 commit 5a1157575e73957d8c7ec2ff016cd38037c5f3e5 Author: Henri VINCENTI Date: Thu Jun 9 11:26:37 2016 -0700 Added mpicom_curr option to read_from_cl routines for scaling tests on MIRA Added counting of particles in border tiles before allocating sendbuff in particle_bcs_mpi_blocking Added choice of blocking/non-blocking exchanges in current_bcs, charge_bcs, field_bcs and particle_bcs src/boundary.F90 src/control_file.F90 commit 99a6c9269d23bb2662e48a33de7962903523c0d4 Author: Henri VINCENTI Date: Thu Jun 9 11:02:52 2016 -0700 Implemented non blocking version of particle exchange Added caching of mpi_derived_types for guard cells exchange src/boundary.F90 src/modules.F90 commit bfb0c18090c762d250dd1d3ccd57ceb5378532f8 Author: HENRI VINCENTI Date: Wed Jun 8 19:47:01 2016 +0000 Uncommented mpi remapping in mpi_routines (was producing too many outputs at large scale) src/mpi_routines.F90 commit 6a157c520c84bad011f38ed84b167313c70ec7ea Author: HENRI VINCENTI Date: Wed Jun 8 19:18:43 2016 +0000 Removed extra "," in write(0,*)( statements in main.F90 src/main.F90 src/modules.F90 commit 9c9ffede0327878b7c08ab0fe30387e54472e8e1 Author: HENRI VINCENTI Date: Wed Jun 8 19:17:46 2016 +0000 Replaced the non standard IARGC function by COMMAND_ARGUMENT src/control_file.F90 commit 1de5360561e9e8626399003ae0daa7cfdf35c65f Author: HENRI VINCENTI Date: Wed Jun 8 19:17:07 2016 +0000 Added KIND precision in MIN and MAX intrinsic functions for MIRA XLF compiler src/boundary.F90 src/current_deposition.F90 src/tiling.F90 commit bc373750874b4d477ce2897fcb5799dd33bfbe84 Author: Henri Vincenti Date: Mon Jun 6 15:33:58 2016 -0700 Corrected all current and field boundary exchanges code now conserves Gauss law src/boundary.F90 src/mpi_derived_types.F90 commit 8713e80d0f5ef23a9c012577b699aa8bd4566a7a Author: Henri VINCENTI Date: Mon Jun 6 13:10:20 2016 -0700 Modified MPI derived types and added MPI_CREATE_SUBARRAY instead of old create_3D_subarray src/mpi_derived_types.F90 src/simple_io.F90 commit 9ead7e228d6317e7b0da83d1199aad0db3aacfd4 Author: Henri Vincenti Date: Thu Jun 2 19:23:01 2016 -0700 Added and tested GPSTD in Fortran python_libs/GPSTDPXR.py python_libs/em3dsolverPXR.py src/GPSTD.F90 src/current_deposition.F90 src/modules.F90 commit cd35900a359b577eda6e9b8787517cead0ef073e Author: Henri Vincenti Date: Tue May 24 18:30:28 2016 -0700 Added #do not parse for partile_species module containing arrays of derived type src/modules.F90 commit 4e2e31547c217b6737c786a58e223fae6f2b5ddc Author: Henri Vincenti Date: Tue May 24 18:28:48 2016 -0700 Created new file GPSTD.F90 containing data structure and routines to perform the field_push in FORTRAN90 OpenMP Updated forthon parser and removed sanity check 3 for arrays of derived types THe user has to add #do not parse in source files for modules containing arrays of derived types src/GPSTD.F90 utils/forthon_parser.py commit 15b8829058166eb41ef9bd47eae815091032d8c9 Author: mathieu_lobet Date: Thu May 5 16:00:08 2016 -0700 Particle communication: new optimized subroutine for tiles and MPI Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr example_scripts_python/em3dsolverPXR.py src/boundary.F90 src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/modules.F90 src/mpi_routines.F90 src/tiling.F90 commit ac706f0caa9234de36f2255045e5008567e78bca Author: Henri Vincenti Date: Fri Apr 29 11:45:32 2016 -0700 added mpi_minimal_init_python in em3dsolverPXR.py example_scripts_python/em3dsolverPXR.py commit 0fab87f675201a55f9bc45d01279a55260c21470 Author: Henri Vincenti Date: Fri Apr 29 11:13:41 2016 -0700 Created mpi_minimal_init_python src/mpi_routines.F90 commit 800b5087f449f53126e522d7efe1bea74cc1737c Author: Henri Vincenti Date: Fri Apr 29 10:59:41 2016 -0700 Changed buffer_timestat from allocatable to pointer src/modules.F90 commit fa6fa7eee3ccc50a9fcb1d27b19dc54c7f1f83a4 Merge: ba8f2559 6aa8729f Author: Henri VINCENTI Date: Fri Apr 29 10:51:08 2016 -0700 Merged in picsar_mpi_com_opt (pull request #4) Picsar_mpi_com_opt commit 6aa8729ff3d7e077556860c07568483f03a62a53 Author: mathieu_lobet Date: Thu Apr 28 21:30:29 2016 -0700 Correction bug: particle_bcs_tiles_2d/3d_openmp Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Makefile example_decks_fortran/homogeneous_plasma.pixr postproc_python_script/PyLoadArrayPicsar.py src/boundary.F90 src/current_deposition.F90 src/diags.F90 src/mpi_routines.F90 src/simple_io.F90 src/submain.F90 src/tiling.F90 commit ba8f255941957f3c5decd290b0f3b44e13cf0b59 Author: Henri Vincenti Date: Thu Apr 28 11:43:36 2016 -0700 Removed extra loadrho() in finalize() example_scripts_python/em3dsolverPXR.py commit 9e3e08819654ee830e9e33eb4875a0553f5d91fb Merge: df10cd68 3dfe4aa3 Author: mathieu_lobet Date: Tue Apr 26 16:01:45 2016 -0700 Merge with master commit df10cd68bd7743f18bfdeb5720e905b3ae44bff9 Author: mathieu_lobet Date: Tue Apr 26 15:58:22 2016 -0700 Small updates Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr example_decks_fortran/homogeneous_plasma.pixr src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/modules.F90 src/simple_io.F90 src/sorting.F90 src/submain.F90 commit 3dfe4aa38fb0ead370ef7677e5d9998bfceae1a6 Merge: bb345d0b 6ca484e1 Author: Henri Vincenti Date: Tue Apr 26 12:52:50 2016 -0700 Merge branch 'picsar_mpi_com_opt' commit bb345d0bf82f7e6387866640c7e8c14809c212bd Author: Henri Vincenti Date: Mon Apr 25 15:14:28 2016 -0700 Modified .gitignore .gitignore commit ad970116674557696d28e6b0214c14b987a191d8 Author: Henri Vincenti Date: Fri Apr 22 18:29:26 2016 -0700 Modified loadsource in em3dsolverpxr to add charge dep (old rho and rho) Modified charge dep in diags.F90 to add 2D routine and old rho routine example_scripts_python/em3dsolverPXR.py src/current_deposition.F90 src/diags.F90 commit 9cb65afe0e5957c138bce776a719b1bcac7cd1f9 Author: Henri Vincenti Date: Wed Apr 20 15:24:27 2016 -0700 Fixed a bug in boundary that appeared on cori only. Previously changed MPI_INTEGER to MPI_INTEGER8 for no reason and this made the code hanging on cori src/boundary.F90 commit 6ca484e156009112c9c7c3ffc65c6d0cc19dab70 Author: mathieu_lobet Date: Wed Apr 13 11:40:35 2016 -0700 Current deposition: reduction after species loop for the classical deposition, module: creation of the module precomputed with precomputed parameters Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr example_scripts_python/em3dsolverPXR.py example_scripts_python/test_Langmuir_wave_3d.py src/boundary.F90 src/current_deposition.F90 src/diags.F90 src/itt_sde_fortran.F90 src/modules.F90 src/particles_push.F90 src/submain.F90 commit da7fbf5bfc993ea2e82d6dfa7a19241416271b58 Author: Henri Vincenti Date: Tue Apr 12 18:28:59 2016 -0700 Added latest version of current spectral corr example_scripts_python/em3dsolverPXR.py commit 6d45e578a78b306b7e43329045048be8e12806f2 Author: Henri Vincenti Date: Tue Apr 12 17:59:15 2016 -0700 Corrected indent problems example_scripts_python/em3dsolverPXR.py commit d200bde51e4b66260b440871a559695a4e5620ff Author: Henri Vincenti Date: Tue Apr 12 16:34:48 2016 -0700 updated spectral psaotd and current_cor in em3dpxr to take into account last changes in atap-warp example_scripts_python/em3dsolverPXR.py commit facc553dfc88225600bc38c442e5cea92aefc4dc Author: Henri Vincenti Date: Tue Apr 12 16:32:37 2016 -0700 Updated scripts HHG_ROM to include spectral solver init example_scripts_python/HHG_ROM.py commit 0aeffa8dc8f711ed93cfe890b34c100b8d606e20 Author: Henri Vincenti Date: Tue Apr 12 16:29:20 2016 -0700 Added update of logical aray isesized when particle tiles arrays are donwsized Otherwise, outputs were creating segfaults when trying to access warp arrays that were deallocated in picsar src/boundary.F90 src/load_balancing.F90 src/tiling.F90 commit 1b541eb1eb1afad4d1ea0c253267f9af11a70cf5 Author: Henri VINCENTI Date: Mon Apr 11 14:54:57 2016 -0700 Added modif in curr_cor spectral example_scripts_python/em3dsolverPXR.py commit b5ab1ea740b2544c045b6ea249724c1b679b9a1d Author: Henri Vincenti Date: Wed Apr 6 18:02:27 2016 -0700 Fixed a bug in KK solver example_scripts_python/em3dsolverPXR.py commit 2cc9f93998a1a46b6824c30071357700eb3019d8 Author: mathieu_lobet Date: Wed Apr 6 17:10:43 2016 -0700 Compatibility sorting with the python version Acceptance_testing/Python_tests/test/test.py Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py example_scripts_python/em3dsolverPXR.py example_scripts_python/test.py example_scripts_python/test_Langmuir_wave_3d.py src/current_deposition.F90 src/particles_push.F90 src/submain.F90 src/tiling.F90 utils/forthon_parser.py commit eaf717c5cd7df738b93b9b3cf5b5a76df5545a5b Author: mathieu_lobet Date: Wed Apr 6 15:01:26 2016 -0700 Improvments current deposition with partially linearized subroutines, new flags in the input_file.pixr, profiling subroutines for vtune/sde Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py Acceptance_testing/Python_tests/test_Langmuir_wave/clean example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr postproc_python_script/PyLoadArrayPicssar.pyc src/control_file.F90 src/current_deposition.F90 src/field_gathering.F90 src/modules.F90 src/particles_push.F90 src/sorting.F90 src/submain.F90 src/tiling.F90 commit 9f0a8d4d8b673a3b9d8f80e2c36dfa11a7035809 Author: Henri VINCENTI Date: Tue Apr 5 22:39:29 2016 -0700 Fixed a major bug in particle_bcs_mpi_blocking for absorbing boundary conditions When particle is out of MPI boundary and absorbed, we set mask to FALSE and CYCLE src/boundary.F90 commit 380c6445d11e2a8389b08f421f3a95cd6e149f7b Author: Henri Vincenti Date: Tue Apr 5 22:38:26 2016 -0700 Added coefficients inits of PXR karkainne solver in em3Dpxr class example_scripts_python/em3dsolverPXR.py commit d6c1b452bf4d0b408fd8dedc29db086b0f83a87f Author: Henri Vincenti Date: Tue Apr 5 15:12:10 2016 -0700 sd for karkainnen solver coefficients Added module kyee_em src/modules.F90 commit f40ce75833eb59b7d18158fa37e831a635897250 Author: Henri Vincenti Date: Tue Apr 5 15:11:08 2016 -0700 Added karkainenn solver in em3dpxr example_scripts_python/em3dsolverPXR.py commit 4876c4f67b15d935856528396bfb37601713147c Author: Henri Vincenti Date: Tue Apr 5 15:08:21 2016 -0700 Added Karkainnen solver OpenMP version 2D/3D in PXR src/maxwell.F90 commit f14c05a21cd732ffad144df5a3c865a22802f501 Merge: 2ce792be 8cc1f3be Author: Henri Vincenti Date: Tue Apr 5 13:45:41 2016 -0700 Merge branch 'master' of https://bitbucket.org/berkeleylab/picsar commit 2ce792be7ee6c3b9b3a057b002befecb5351aa84 Author: Henri Vincenti Date: Tue Apr 5 13:44:23 2016 -0700 Removed print statements in load_balancing.F90 src/load_balancing.F90 commit 8cc1f3be5a2fe9f47be54a4608d3b19b10d01ae0 Author: Henri VINCENTI Date: Tue Apr 5 08:49:36 2016 -0700 Added timing of particle_bcs src/boundary.F90 commit 8b68405d731aa754f0ac24bf1d9ca77da4e6b019 Author: Henri Vincenti Date: Mon Apr 4 19:59:48 2016 -0700 Changed tile size to nx/35 nz/35 for 2d load balancing compute_new_tile_split otherwise was set to non optimal case nx/10 nz/10 src/load_balancing.F90 commit 4130a4d343fba4b25558e012a610ea271210cc85 Author: Henri Vincenti Date: Mon Apr 4 17:17:50 2016 -0700 Modified timing routines for load balancing in em3dsolver.py example_scripts_python/em3dsolverPXR.py commit 4492123927858cf0791ba62c6b9934f6e7016a86 Author: Henri VINCENTI Date: Sat Apr 2 19:03:28 2016 -0700 Modified MPI tags in load balancing routines. For strange reasons, Remap particles was stuck when send tags were not set to a given value and rev tags to MPI_ANY_TAG. could the problems come from the fact that if mpitag is not set to MPI_ANY_TAG for recver, app deadlocks when two ISEND are done towards one identical recverwith two different tags? The probblem only appeared when running the job on two different nodes. Fixed bugs in 2D and 3D openmp version of tile exchanges src/boundary.F90 src/load_balancing.F90 commit 7f42fd48381123e5b1cb9a8934d33fbe52fa29bf Author: mathieu_lobet Date: Fri Apr 1 10:45:45 2016 -0700 Addition of particle sorting Acceptance_testing/Fortran_tests/test_Langmuir_wave/.cache/v/cache/lastfailed Acceptance_testing/Fortran_tests/test_Langmuir_wave/clean Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_Langmuir_wave/launcher Acceptance_testing/Fortran_tests/test_homogeneous_plasma/clean Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/clean Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Acceptance_testing/Python_tests/test/test.py Acceptance_testing/Python_tests/test_Langmuir_wave/clean Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py INSTALL_PYTHON.md Makefile Makefile_Forthon example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/langmuir_wave.pixr example_scripts_python/em3dsolverPXR.py example_scripts_python/homogeneous_plasma.py example_scripts_python/test.py example_scripts_python/test_Langmuir_wave_3d.py postproc_python_script/PyLoadArrayPicsar.py src/api_fortran_itt.c src/boundary.F90 src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/field_gathering.F90 src/itt_sde_fortran.F90 src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 src/simple_io.F90 src/sorting.F90 src/submain.F90 src/tiling.F90 utils/forthon_parser.py commit 6e2b57a30cbacaea7dc9988b4c271b78fb7e1935 Author: Henri VINCENTI Date: Thu Mar 31 20:47:28 2016 -0700 Removed #do not parse flag on subroutine set_tile_split_for_species src/tiling.F90 commit df6776a66b111a046d28ca4c1cbafa386f7304f0 Author: Henri Vincenti Date: Thu Mar 31 15:37:38 2016 -0700 Added do not parse foor subroutine blocks in forthon_parser utils/forthon_parser.py commit 380f6c0bd5659200d4eeca430b52aba5c2e8d7e5 Author: Henri Vincenti Date: Thu Mar 31 14:10:03 2016 -0700 Removed if statements in depose_esirkepov_2d in PXR that were slowing the code significantly (40%) src/current_deposition.F90 commit 2b29d9b3ea7fc25df9fbd2665d87ecfe2f22052a Author: Henri VINCENTI Date: Wed Mar 30 23:12:04 2016 -0700 Corrected typo in compiler directive load_balancing.F90 src/load_balancing.F90 commit 0c07c2d1ef608b156373df07e9e289e379796000 Author: Henri VINCENTI Date: Wed Mar 30 23:10:55 2016 -0700 Added compiler directive in compute new tile split of load_balancing.F90 src/load_balancing.F90 commit 53b72f2ed48ed40b8aca96fb75f4e1eb7d8dfdfc Author: Henri VINCENTI Date: Wed Mar 30 22:03:00 2016 -0700 Corrected a bug in tiling.F90 that created integer overflow removed reference to subset HHG_ROM.py example_scripts_python/HHG_ROM.py src/tiling.F90 commit cc727f0ba0a096f4e02e8d266f0140add98370bf Author: Henri Vincenti Date: Wed Mar 30 17:48:27 2016 -0700 Put 0 ppcell by default in set_particle_species_properties in em3dsolverPXR.py example_scripts_python/em3dsolverPXR.py commit ffa439adfa17d362972a9f67604d3ce896df2594 Author: Henri Vincenti Date: Wed Mar 30 17:45:11 2016 -0700 Added OpenMP version of particle exchange between tiles in 2d and 3d Added openMP directives in boundary.F90 to determine which subroutine to use Added OpenMP directives in particle_bcs_openmp_2d and particle_bcs_openmp for determining maximun number of threads Added 2D case for MPI obound flag in tile -> Improved mPI exchange time by factor of x6 Modified forthon parser to avoid lower-casing compiler directives (that are case sensitive) src/boundary.F90 src/current_deposition.F90 src/tiling.F90 utils/forthon_parser.py commit c994486a9d80f3d6e1f6e1f644167e034f46f967 Author: Henri Vincenti Date: Wed Mar 30 12:31:36 2016 -0700 Removing partickes from species_parray new src/load_balancing.F90 commit 1fac3d425f6edc7c5458d6262315b728b8f89fe1 Author: Henri Vincenti Date: Wed Mar 30 12:29:23 2016 -0700 Corrected a bug in downsize factor (from 2 to 0.5) Now removing particles when creating tmp array src/load_balancing.F90 src/modules.F90 src/tiling.F90 commit 7e307fa626d52316e935b7aa349671cb5a55f54d Author: Henri Vincenti Date: Wed Mar 30 11:06:09 2016 -0700 Added downsizing of arrays in rm_particle_at_tile to avoid memory leaks (especially when load balancing) src/tiling.F90 commit 5a2bab76d2bb6b533c74f17bbb7f092c086d32eb Author: Henri Vincenti Date: Tue Mar 29 16:53:13 2016 -0700 Removed subset option in HHG_CORI_ROM example_scripts_python/HHG_ROM_CORI.py commit a68841af6d3af46bff6322561ac9d27a9f7ec789 Author: Henri Vincenti Date: Tue Mar 29 16:43:17 2016 -0700 added HHG_ROM case with CORI parameters example_scripts_python/HHG_ROM_CORI.py commit 0f3799452597d299848d01a790bb0855763a4720 Author: Henri Vincenti Date: Tue Mar 29 16:35:42 2016 -0700 Fixed a bug in particle init in HHG_ROM.py example_scripts_python/HHG_ROM.py commit 3ffc5f1e92b5c7995b389df71d393a4653b04a61 Author: Henri Vincenti Date: Tue Mar 29 16:32:50 2016 -0700 Added optional argument for iteration at init at which dlb is performed. it has to be performed a least at it>2 for the statistics to be relevant (time/cell, time/part) example_scripts_python/em3dsolverPXR.py commit f6b0b00d87754e0568aecae6c7a6021b601fa015 Author: Henri Vincenti Date: Mon Mar 28 20:03:19 2016 -0700 Modified HHG ROM for production runs on Cori example_scripts_python/HHG_ROM.py commit 5ec8553508fa07f139b4d2b6d0c8ff40c194be6a Author: Henri Vincenti Date: Mon Mar 28 19:36:57 2016 -0700 Modified waist in HHG_ROM.py Added nox+1 in tile guard cells example_scripts_python/HHG_ROM.py src/tiling.F90 commit ff2cf792ca9583ee3179e97d4a9ee7cfb2e6cc9f Author: Henri Vincenti Date: Mon Mar 28 17:05:24 2016 -0700 Corrected a bug in particle_bcs_mpi_blocking. Set mask to False when particle is outside MPI domain with absorb particle conditions Corrected a bug in em3dsolverpxr (xmax particle boundary was not properly set) example_scripts_python/em3dsolverPXR.py src/boundary.F90 commit 9adae64a26325c1889c9751d415ae07a01e8d2b2 Author: Henri Vincenti Date: Mon Mar 28 15:03:40 2016 -0700 Added forgotten files in previous commit src/current_deposition.F90 src/load_balancing.F90 src/tiling.F90 commit 53aadb9a208fc6f4e9eeb79dda8968eb3fb222e3 Author: Henri Vincenti Date: Mon Mar 28 15:01:47 2016 -0700 - Corrected bug in computing of time/cell in load_balancing.F90 in 2D - Added case HHG to the repo - Modified case ion_acceleration - Modified em3dpxr class for 2d load balancing example_scripts_python/HHG_ROM.py example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py commit ed84bad687442a5e5d208ff13758fc672415fde1 Author: Henri VINCENTI Date: Mon Mar 28 11:34:59 2016 -0700 Added particle bcs for tiles in 2D Modified MPI exchanges for 2D case (paramater c_dim) src/boundary.F90 commit 697a8261ae7b4b969091ed2d0150d65903102afa Author: Henri VINCENTI Date: Mon Mar 28 09:54:32 2016 -0700 Modified the code to enable 2D version of PXR: - Added c_dim Fortran flag in PXR - Modified em3dsolverPXR class (set up of c_dim flag) - Modified current deposition main routine to choose between 2D and 3D routines (in current_deposition.F90) - Added 2D current deposition routine in current_deposition.F90 - Modified particle_push to enable 2D field gathering (in particle_push.F90) - Added 2D field gathering routine in field_gathering.F90 - Still fixing load balancing routine (added 2D versions in load_balancing.F90) example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/current_deposition.F90 src/field_gathering.F90 src/load_balancing.F90 src/modules.F90 src/particles_push.F90 src/tiling.F90 commit 2d716823289de7e1886fe0aab790ca8f5756cc4b Author: Henri Vincenti Date: Fri Mar 25 18:10:34 2016 -0700 Removed mpi-io custom diag option from ion_acceleration.py example_scripts_python/ion_acceleration.py commit 7c7b1da480426bb2d13e393b5f241c50ec9edafa Author: Henri Vincenti Date: Fri Mar 25 18:08:45 2016 -0700 Modified test case ion acceleration example_scripts_python/ion_acceleration.py commit 3f5aac56b76c4fc727c9090825c73cc49e14084d Author: Henri Vincenti Date: Mon Mar 21 15:48:03 2016 -0700 Fixed a typo in load_balancing:F90 (suppressed accidentaly MPI_WAITALL for the number of particles) src/load_balancing.F90 commit 75ccd0a4b29a920c8f7399474705c189a3707b9b Author: Henri Vincenti Date: Mon Mar 21 13:33:21 2016 -0700 Fixed a bug in load_balancing.F90 (wrong number of requests in MPI_Waitall) src/load_balancing.F90 commit 7cbeee13f76e25568c4ec44b2e38e9d9ae99cd96 Author: Henri VINCENTI Date: Sat Mar 19 22:12:26 2016 -0700 Modified simple io and added python routine Modified default l_output_freq to 1 of Em3DPXR example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/simple_io.F90 commit 729f2f5b0389c183c372f1a1e06dd67a75b12b92 Author: Henri Vincenti Date: Fri Mar 18 15:51:20 2016 -0700 Inserted custom io from PXR example_scripts_python/em3dsolverPXR.py src/simple_io.F90 commit c0dade71cb5ec2ce80f3e3190b9f6aa95f7c3af2 Author: Henri Vincenti Date: Wed Mar 16 17:18:27 2016 -0700 Created a remove_particle_from_species method to renmove one particle Removal of several particles was nicknamed remove_particle_species_from_mask src/boundary.F90 src/tiling.F90 commit 69b698e52e1e39d4f111694ca36d0b64b11e4ec3 Author: Henri Vincenti Date: Wed Mar 16 17:17:17 2016 -0700 Removed useless comments from load_balancing.F90 src/load_balancing.F90 commit 42e1a26aaa2495e41c48125ad340ee4b81f465d2 Author: Henri Vincenti Date: Wed Mar 16 17:16:18 2016 -0700 Set species.sw to 1. in em3dsolverpxr PID in pxr already contains species.sw example_scripts_python/em3dsolverPXR.py commit b2495f6d9f0a4f0f22b758dc0f51cdc12d07a991 Author: Henri Vincenti Date: Wed Mar 16 14:07:54 2016 -0700 Added init of particle boundary flags in PXR example_scripts_python/em3dsolverPXR.py commit a8c8598d702a7ddcf78201ed6bcfa652ac6ef4ee Author: Henri Vincenti Date: Wed Mar 16 14:07:21 2016 -0700 Added flags for particle boundaries in modules.F90 and default case init in control.F90 src/control_file.F90 src/modules.F90 commit 2defb36a06e6d525147e3a4fe0fdfa18464ec060 Author: Henri Vincenti Date: Wed Mar 16 14:06:39 2016 -0700 Inserted absorbing boundary conditions for particles src/boundary.F90 commit 2154ef03f4aca6d0f645fa7e86afa9990c431ef5 Author: Henri Vincenti Date: Wed Mar 16 14:05:32 2016 -0700 Fiexed a bug in load_balancing.F90 replaced ncpus by npx, npy, npz in calls to get_proc_interval src/load_balancing.F90 commit 8ccb52c5b0c16ab0673c2243a26d0650b05a48ba Author: Henri Vincenti Date: Wed Mar 16 11:54:19 2016 -0700 Included load balancing options and cartesian communicator example_scripts_python/ion_acceleration.py commit f248e8924d5957d427dc922bc0e373ec4a252f41 Author: Henri Vincenti Date: Wed Mar 16 10:55:39 2016 -0700 Removed useless PRINT comments in load_balancing.F90 src/load_balancing.F90 commit a0ea9228b264f92eae350baacda86be49f2cd2d8 Merge: c7f71546 c310f97e Author: Henri Vincenti Date: Wed Mar 16 10:43:29 2016 -0700 Merge branch 'picsar_load_balancing' commit c310f97e4973150488c9e183a3c602680b836f73 Author: Henri Vincenti Date: Wed Mar 16 10:39:50 2016 -0700 Removed fbounds check in Makefile_Forthon Makefile_Forthon commit b1565e97dd565f3569a8c7dc9d2b51e1084f9854 Author: Henri Vincenti Date: Wed Mar 16 10:39:25 2016 -0700 Removed fbounds check in Makefile example_scripts_python/test_load_balancing.py commit aab587337fb74f3521d62e59e4cb2ef05f4101d4 Author: Henri Vincenti Date: Wed Mar 16 10:37:04 2016 -0700 Removed main fortran routine for loa_balancing (main routine is in python)i Inserted comments describing the module src/load_balancing.F90 commit 6b51fc070cb80d2c015a20c76be4193e0cc14db9 Author: Henri Vincenti Date: Tue Mar 15 21:03:50 2016 -0700 Fixed a lot of bugs in load balancing Fortran routine - Bug in binary_search (LOGICAL FLAG WAS set randommly to TRUE or FALSE) - Idem in get_proc_interval - Lot of bugs in indexes of recvbuff that have been multiplied by nvar src/load_balancing.F90 commit 2950fe5ad2ef2ddcaa725e46a5c66bb87743f17f Author: Henri Vincenti Date: Mon Mar 14 19:45:06 2016 -0700 Fixed bug in set_new_tile_split Added a dedicated routine for particle exchange in load_balancing.F90 Modified get1DArrayproclimits and removed comm in dummy arguments Modified get1darrayproclimits in em3dpxr.py example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 commit b0ab733195db6fe1b55a84d008e59e02e9352e0c Author: mathieu_lobet Date: Mon Mar 14 14:02:09 2016 -0700 Temporal diagnostics for the fortran and python versions/new flags/Acceptance testing Acceptance_testing/Fortran_tests/test_Langmuir_wave/.cache/v/cache/lastfailed Acceptance_testing/Fortran_tests/test_Langmuir_wave/conftest.py Acceptance_testing/Fortran_tests/test_Langmuir_wave/conftest.pyc Acceptance_testing/Fortran_tests/test_Langmuir_wave/input_file.pixr Acceptance_testing/Fortran_tests/test_Langmuir_wave/launcher Acceptance_testing/Fortran_tests/test_Langmuir_wave/test_langmuir_wave.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/conftest.py Acceptance_testing/Fortran_tests/test_homogeneous_plasma/conftest.pyc Acceptance_testing/Fortran_tests/test_homogeneous_plasma/input_file.pixr Acceptance_testing/Fortran_tests/test_homogeneous_plasma/launcher Acceptance_testing/Fortran_tests/test_homogeneous_plasma/test_homogeneous_plasma.py Acceptance_testing/Fortran_tests/test_plasma_drift/conftest.py Acceptance_testing/Fortran_tests/test_plasma_drift/conftest.pyc Acceptance_testing/Fortran_tests/test_plasma_drift/input_file.pixr Acceptance_testing/Fortran_tests/test_plasma_drift/launcher Acceptance_testing/Fortran_tests/test_plasma_drift/test_plasma_drift.py Acceptance_testing/Python_tests/test/test.py Acceptance_testing/Python_tests/test_Langmuir_wave/test_Langmuir_wave_3d.py INSTALL_FORTRAN.md INSTALL_PYTHON.md Makefile Makefile_Forthon example_decks_fortran/drifted_plasma.pixr example_decks_fortran/homogeneous_plasma.pixr example_decks_fortran/homogeneous_plasma.py example_decks_fortran/langmuir_wave.pixr example_decks_fortran/test.pixr example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py example_scripts_python/test_Langmuir_wave_3d.py postproc_python_script/PyLoadArrayPicssar.py postproc_python_script/PyLoadArrayPicssar.pyc postproc_python_script/__pycache__/test_divergence_picssar.cpython-27-PYTEST.pyc postproc_python_script/check_divE=rho.py postproc_python_script/plot_field_picsar.py src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/main.F90 src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 src/simple_io.F90 src/submain.F90 src/tiling.F90 commit c39dfa4b2d6d5d6a7b3f60816d3b9b69885d64ef Author: Henri Vincenti Date: Thu Mar 10 11:40:12 2016 -0800 Chanded mpi_comm in mpi_commin src/load_balancing.F90 commit 51c0a37f254ef1bfac84cc6f34e83ab5574c496b Author: Henri Vincenti Date: Thu Mar 10 11:38:12 2016 -0800 Changed mpi_comm in mpi_comm_in in get1Darrayprocslimits src/load_balancing.F90 commit a24b57657a6f47a95396ba161f4b5b251196cb3f Author: Henri Vincenti Date: Thu Mar 10 11:32:45 2016 -0800 Replaced ambiguous reference comm vs mpi_comm in get1Darray_procs_limits src/load_balancing.F90 commit 903d49cd508aff6321546927b6e432b111ad481b Author: Henri Vincenti Date: Tue Mar 8 17:37:26 2016 -0800 Removed comments from load balancing routines Added option of doing load balancing at init Improved ion_acc_stepan Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/tiling.F90 commit ab8e19e8087861959bc039411d3967990f2f86d3 Author: Henri Vincenti Date: Mon Mar 7 20:52:34 2016 -0800 Modified PXR class for pgroup aliasing between WARP and PXR example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py commit a5e5b693b97de340656d3b950baf39998c5278cb Author: Henri Vincenti Date: Mon Mar 7 17:51:55 2016 -0800 Added OMP directived for evec and bvec 3D maxwell push routines example_scripts_python/test_load_balancing.py src/maxwell.F90 commit e9f081c11ee2a2a3211a0298ad6df0067f3225e5 Author: Henri Vincenti Date: Mon Mar 7 16:57:57 2016 -0800 Removed "-fbounds-check" from Makefile -> Code was 20% slower with this option Makefile_Forthon commit c7f7154638e6d47606bd6d45fc36ac4ef68c334b Author: Henri Vincenti Date: Mon Mar 7 15:16:52 2016 -0800 Added jx jy jz in class Em3dpxr Modified call to depose current subroutine in em3dpxr example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py commit d7081875c5c5c14379b00a2c9d0626e024142990 Author: Henri Vincenti Date: Mon Mar 7 14:40:47 2016 -0800 New changes for tests performances Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/modules.F90 src/tiling.F90 commit 504ebce6a6510f8fc55bc5d8f4c27ac416b219b4 Author: Henri Vincenti Date: Mon Mar 7 11:29:17 2016 -0800 Improved routine balance_in_dir by removing rounding approximation in balanced_laod. example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 commit b5251756de3624b6e111d49b11030dbb3f85dc33 Author: Henri VINCENTI Date: Sat Mar 5 20:34:15 2016 -0800 Fixed many bugs: - In field exchange (nsreq was improperly set to 0 causing crash) - In set_tile_split_for_species, replaced ntilex by ntx. This was causing a bug when redefining array of tile during load balancing, example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/current_deposition.F90 src/load_balancing.F90 src/tiling.F90 commit 31648a4d8feead45ef8c495b08a31c38e058612d Author: Henri Vincenti Date: Fri Mar 4 12:01:35 2016 -0800 Inserted type commit for derived type example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 commit 4b26a35f47c967dcc6455e62fb947c620ee7b2c3 Author: Henri Vincenti Date: Thu Mar 3 20:13:27 2016 -0800 Corrected many bugs in MPI SEND/RECV for load balancing for fields example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 commit 2ca1f74e7232b6544ff41e005a53c20a20fc659a Author: Henri Vincenti Date: Thu Mar 3 11:21:42 2016 -0800 Fixed bugs for particle exchange (Allocatable was discarded out of subroutine scope and pointer species_parray was pointing to invalid location). Replaced this by simple copies. example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/modules.F90 commit 2fcf40c9df5926092a4112b60aae869e8c75ad93 Author: Henri Vincenti Date: Wed Mar 2 18:21:53 2016 -0800 Added particle exchange routine for load balancing example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/current_deposition.F90 src/load_balancing.F90 src/modules.F90 src/mpi_routines.F90 src/tiling.F90 commit fb7e0da289bc7bb8fbb169530dec55f2b3e52d93 Author: Henri Vincenti Date: Wed Mar 2 14:04:13 2016 -0800 Added subroutine set_tile_split_for_species redefined routine set_tile_split Added hte possibility of target arguement in subroutine in the forthon parser example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/modules.F90 src/tiling.F90 utils/forthon_parser.py commit 9d8ba24dec2a08fa9ad3ce92a2d0c724e0805215 Author: Henri Vincenti Date: Wed Mar 2 12:55:46 2016 -0800 Added MPI exchange of guard cells for em fields example_scripts_python/em3dsolverPXR.py commit 43d00b5f3dd0a3843c962312f892a0e556dfe441 Author: Henri Vincenti Date: Wed Mar 2 11:59:19 2016 -0800 Fixed bugs in load balancig routines Finalized and tested load balancing for fields example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/modules.F90 src/mpi_routines.F90 commit 4683e56e97316ddae388600a6682dfa5095055df Author: mathieu_lobet Date: Mon Feb 29 11:16:36 2016 -0800 Modifications: classical/random topology, time statistics, test of persistent commnunications, new entries in the input file example_scripts_python/postproc/plot_field_piccsar.py postproc_python_script/PyLoadArrayPicssar.py postproc_python_script/PyLoadArrayPicssar.pyc postproc_python_script/plot_field_picsar.py postproc_python_script/test_divergence_picssar.py src/boundary.F90 src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/main.F90 src/maxwell.F90 src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 src/simple_io.F90 src/submain.F90 src/tiling.F90 commit 3bac8921a0ba991d4b66bcc6faebe376c2d5ed8a Author: Henri Vincenti Date: Mon Feb 29 11:01:08 2016 -0800 Inserted jx jy jz in scripts example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/mpi_routines.F90 commit 06fbb848f1a1341dd6d2c3c1480a58bec5d13702 Author: Henri Vincenti Date: Tue Feb 23 17:59:35 2016 -0800 Added init variable for PXR in EM3DPXR regqarding MPI domain decomp Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/boundary.F90 src/load_balancing.F90 src/modules.F90 src/mpi_routines.F90 commit a592c3b2f1d247ffbd0d863c2a44e118606c586f Author: Henri Vincenti Date: Mon Feb 22 18:00:35 2016 -0800 Added main routine mpi_remap_fields_3D for load balancing src/load_balancing.F90 commit b9b6382538b358cde99676bb707f36a12c3dac90 Author: Henri Vincenti Date: Mon Feb 22 15:44:00 2016 -0800 Added routine get_3Dintersection to compute intersection between two 3d volumes Added routine to remap 3D fields on new split using MPI src/load_balancing.F90 commit e325c80d66fbc3d663a9a1a4261fa537ca8fa479 Author: Henri Vincenti Date: Fri Feb 19 18:38:35 2016 -0800 Added routines to perform new split depending on load imbalance example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/mpi_routines.F90 commit abb794bc8bc9b2e78702c543652999c195bc04c6 Author: Henri Vincenti Date: Thu Feb 18 18:45:22 2016 -0800 New routines for load balancing (compute load in each dir) example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/modules.F90 src/mpi_routines.F90 src/tiling.F90 commit 264e169249b57440ab7ff8b518af7a96e0a401de Author: Henri Vincenti Date: Thu Feb 18 12:04:21 2016 -0800 Moidifed control.F90 and test.pixr (added init of nxguards,nxjguards and xmin,xmax that were missing in FOrtran version) example_decks_fortran/test.pixr src/boundary.F90 src/control_file.F90 src/submain.F90 src/tiling.F90 commit d84e6f186edfcaa8e6c2ef445c1d9adf5f513af2 Author: Henri Vincenti Date: Thu Feb 18 11:24:54 2016 -0800 Added timing routines in EM3DPXR example_scripts_python/em3dsolverPXR.py example_scripts_python/test_load_balancing.py src/load_balancing.F90 src/modules.F90 src/mpi_routines.F90 commit 3aa8b6a6eaec7d306862d35804c715e4c1373db2 Author: Henri Vincenti Date: Wed Feb 17 18:58:30 2016 -0800 Included file load_balancing.F90 in the Forthon_parser list of files Added subroutines to compute total load on each, X,Y,Z axis of the simulation Added subroutine to compute new processor boundaries based on load projections src/load_balancing.F90 src/modules.F90 utils/forthon_parser.py commit 67d3fdaf2d317ca8b08a8d2e3638a79a6ad3ec2c Merge: 7f2abdf4 355a3179 Author: Henri VINCENTI Date: Wed Feb 17 15:03:59 2016 -0800 Merged in mathieu_lobet/install_pythonmd-edited-online-with-bitb-1455314304577 (pull request #2) INSTALL_PYTHON.md edited online with Bitbucket commit 7f2abdf4bbdb6e5f7723062a63b58801a97bdd37 Merge: d650e87b 95c22633 Author: Henri VINCENTI Date: Wed Feb 17 14:58:08 2016 -0800 Merge branch 'picsar_new_Split' Conflicts: .gitignore commit d650e87b2fa72f8d13fab59628645576d571067c Author: Henri VINCENTI Date: Wed Feb 17 14:53:29 2016 -0800 Modified .gitignore .gitignore commit 95c2263322388c8365ce537fd69c8eac099eb825 Author: Henri VINCENTI Date: Wed Feb 17 14:50:05 2016 -0800 Removed jxtile,jytile,jztile,rhotile from the qrrqy_of_tiles particle struct src/modules.F90 src/tiling.F90 commit b8cfb1276406701e64122157c13dc47fcb42a0d5 Author: Henri VINCENTI Date: Wed Feb 17 14:45:07 2016 -0800 Improved code layout Changed buggy test.py for Python testing example_scripts_python/test.py src/current_deposition.F90 src/diags.F90 src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 src/tiling.F90 commit 20d39983527e383326087b94daef3d1fc4338061 Author: Henri Vincenti Date: Tue Feb 16 15:19:42 2016 -0800 Last version example_scripts_python/ion_acceleration.py src/boundary.F90 src/mpi_routines.F90 src/tiling.F90 commit 355a31797f2bdab4c01826260b10886cba596c54 Author: mathieu lobet Date: Fri Feb 12 21:58:37 2016 +0000 INSTALL_PYTHON.md edited online with Bitbucket INSTALL_PYTHON.md commit 24cdd5c54900d2c838de518c1c8a345b4ae55fe4 Author: Henri Vincenti Date: Thu Feb 11 19:58:06 2016 -0800 Tested OpenMP version Added OpenMP version for currrent deposition with the new grid tile decomp Makefile_Forthon example_scripts_python/ion_acceleration.py src/current_deposition.F90 src/modules.F90 src/particles_push.F90 src/tiling.F90 commit 078c5b51bb911e143996995b8a42ca0ff9ff1c1e Author: Henri Vincenti Date: Thu Feb 11 13:38:16 2016 -0800 Modified EM3DPXR.py to enable MPI. MPI now works with periodic boundary conditions only for particles Modified picsar so that tiling arrays are not part of particle_tile object but are sperated objects Modified push and current dep routines .gitignore Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/boundary.F90 src/current_deposition.F90 src/field_gathering.F90 src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 src/tiling.F90 commit c96618c679bf204be657b478a643fa63c01c7b04 Author: Henri Vincenti Date: Mon Feb 8 19:45:06 2016 -0800 Refresh aliasing between WARP and PXR when PXR resize arrays example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/boundary.F90 src/current_deposition.F90 src/modules.F90 src/particles_push.F90 src/tiling.F90 utils/forthon_parser.py commit 3364453430d5e656155efc8b46602e31436390c6 Author: Henri Vincenti Date: Wed Feb 3 11:39:57 2016 -0800 Test compiler Forthon option influence on perf Makefile_Forthon example_scripts_python/em3dsolverPXR.py src/current_deposition.F90 commit 870dfb9eca5b89fde5c9d72366cf3cb75886d001 Author: Henri Vincenti Date: Tue Feb 2 19:57:30 2016 -0800 Test on depose current WARP/PXR Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/current_deposition.F90 src/modules.F90 src/particles_push.F90 src/submain.F90 src/tiling.F90 commit ee0134123d340b0e5b2424913929ed5ea30ca7bb Author: Henri Vincenti Date: Mon Feb 1 14:06:56 2016 -0800 Added loadsource to EM3DPXR class example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/current_deposition.F90 commit dab53ea3c98b72942f334a50ca84606827041ab5 Author: Henri VINCENTI Date: Fri Jan 29 17:25:06 2016 -0800 Fixed a large amount of bugs: - Changed weight to pid in PICSAR. This allowed effective pointing between pxr.pid and self.pid in em3dpxr.py - Added init of pg.sid[0]=0 in em3dpxr.py otherwise particles were not removed in the WARP routine particleboundaries3d for bound=absorb - In onestep() in em3dpxr compute gamma after bcs_tile() Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/boundary.F90 src/current_deposition.F90 src/diags.F90 src/modules.F90 src/particles_push.F90 src/tiling.F90 commit ed0bfbda1ec3e27f9c5c20ec76688a9cacb55650 Author: Henri VINCENTI Date: Wed Jan 27 17:36:25 2016 -0800 Fixed picsar source files so that np_tile is an array of dimension 1 and partn a pointer to this array This allows coupling between warp and picsar example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/boundary.F90 src/current_deposition.F90 src/diags.F90 src/modules.F90 src/particles_push.F90 src/tiling.F90 commit 39ac08a974d5735c7d397b1c1b1f108bfbed3d83 Author: Henri Vincenti Date: Tue Jan 26 13:43:21 2016 -0800 Modified parser so that derived types are included particle_tile objets are now accessible through picsarpy example_scripts_python/ion_acceleration.py src/modules.F90 utils/forthon_parser.py commit 7f6b5e7eb467ff9ec31234910eb57b8bedccfc8b Author: Henri Vincenti Date: Mon Jan 25 16:36:14 2016 -0800 Inserted new diag for particles when ntilex*ntiley*ntilez>1 in ion_acceleration.py Whole PIC loop working but need to add current deposition in case ntilex*ntiley*ntilez>1 Otherwise results are wrong Whole PIC loop example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/particles_push.F90 src/tiling.F90 commit 122b345ec15232a4ed8fea96dde375fe59d987ec Author: Henri Vincenti Date: Fri Jan 22 16:45:08 2016 -0800 New version Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/current_deposition.F90 src/maxwell.F90 src/mpi_routines.F90 src/particles_push.F90 src/submain.F90 commit 4157cc4680d460202f66663bc29ac450458799fe Author: Henri Vincenti Date: Fri Jan 22 14:35:26 2016 -0800 Last version with corrected bug in ion_acceleration.py .gitignore Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/field_gathering.F90 src/modules.F90 src/particles_push.F90 src/tiling.F90 commit fb801c36c9f458111e43377104825aa30f1c2083 Author: Henri Vincenti Date: Wed Jan 20 15:13:25 2016 -0800 Last version with bound bug .gitignore Makefile_Forthon example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/boundary.F90 src/mpi_routines.F90 src/particles_push.F90 src/tiling.F90 commit aa717562da4ac1144fb4a5581f92cbf14cef8d22 Author: Henri Vincenti Date: Tue Jan 19 18:35:08 2016 -0800 inew branch for cpu split example_scripts_python/em3dsolverPXR.py example_scripts_python/ion_acceleration.py src/modules.F90 src/mpi_routines.F90 src/particles_push.F90 commit cf78d6e91051b33f32b24a2f6f25d4d974fd3d13 Author: Jean-Luc Vay Date: Fri Jan 15 08:41:52 2016 -0800 Test of Warpxr simulation: ion acceleration. example_scripts_python/ion_acceleration.py commit ecdf3cdf2254f4c2810629005f0bcd2ee3b7918a Author: Jean-Luc Vay Date: Fri Jan 15 08:41:03 2016 -0800 Test of Warpxr simulation: laser propagation. example_scripts_python/test_laser.py commit 2bc5edc3fa9cb719ecc60c046e860830f9fa4d14 Author: Jean-Luc Vay Date: Fri Jan 15 08:40:14 2016 -0800 Class derived from Warp's em3dsolver.py class, for bridging Warp and PICSAR. example_scripts_python/em3dsolverPXR.py commit 0f9c569de95a32eb5e9f68890a8de766d00d928c Author: Jean-Luc Vay Date: Fri Jan 15 08:39:56 2016 -0800 Various changes. example_scripts_python/testwwarp.py commit 7c8b8a8947718cf08018f035dd04143967235f9a Author: Jean-Luc Vay Date: Fri Jan 15 08:38:29 2016 -0800 Added setting of EM field in point_to_tile. src/tiling.F90 commit ba7431c81cd5e2466cbf5ffe06008318ff41b3aa Author: Jean-Luc Vay Date: Fri Jan 15 08:37:58 2016 -0800 A few fixes and addition of split versions. src/particles_push.F90 commit 2a9525b092208df2052e2cd1e9d7bd3219f03ebb Author: Jean-Luc Vay Date: Fri Jan 15 08:36:33 2016 -0800 A few fixes and addition of split versions. src/particles_push.F90 commit c1ca45d448cec8ea3f4b9dea77a3fb655f0dbe32 Author: Jean-Luc Vay Date: Fri Jan 15 08:32:26 2016 -0800 A few edits for compatibility with Warp. src/modules.F90 commit 96079e9ea1a5c1ca9fe01477aff310db9b4748d2 Author: Jean-Luc Vay Date: Fri Jan 15 08:31:21 2016 -0800 Added pxr prefix to distinguish for Warp routines. Added 2D versions of routines. src/maxwell.F90 commit 302ed87b0b840d5a44b416feb77291031b52cd78 Author: Jean-Luc Vay Date: Fri Jan 15 08:30:25 2016 -0800 Fixed typos. src/field_gathering.F90 commit 92a02a7cb442622ed138f6f9f793d4e0ae132f04 Author: Jean-Luc Vay Date: Fri Jan 15 08:29:44 2016 -0800 Added SUBROUTINE init_species_section. src/control_file.F90 commit 7d4cb9d638c25a11ec8a227248514dfc87e02d19 Author: Henri VINCENTI Date: Fri Jan 8 09:29:51 2016 -0800 Improved test.py Makefile_Forthon example_scripts_python/test.py commit 4200162a0184009bc21fba91bd4566156e0fdad9 Author: Henri VINCENTI Date: Thu Jan 7 15:31:03 2016 -0800 Improved plasma init by creating routine add_particles_to_species that takes an array as parameter example_scripts_python/test.py src/tiling.F90 commit 1eabdeb819efac2ae3b8bb3c70473c6206441f2d Author: Henri VINCENTI Date: Thu Jan 7 14:20:47 2016 -0800 Init is now in full python .gitignore example_scripts_python/test.py src/modules.F90 src/submain.F90 commit 60a6a52409b9da087e1d0b9466d430f768a7b37f Author: Henri VINCENTI Date: Thu Jan 7 11:19:33 2016 -0800 Modified Install file Improved file test.py INSTALL_PYTHON.md Makefile_Forthon example_scripts_python/test.py src/tiling.F90 commit a8319371db2176ba7f007edef0593575e08faea3 Author: Henri VINCENTI Date: Wed Jan 6 17:12:45 2016 -0800 Modified install files INSTALL_FORTRAN.md INSTALL_PYTHON.md commit 654c04509f45753dc8969e47f6aaeafcbfe8073c Author: Henri VINCENTI Date: Wed Jan 6 17:09:58 2016 -0800 EADME README.md commit 016917d2b520fbf0d0d5c30061ef421c8c686184 Author: Henri VINCENTI Date: Wed Jan 6 17:09:11 2016 -0800 README README.md commit 50b255dd2e5b826955f27a52527de77c28800d31 Author: Henri VINCENTI Date: Wed Jan 6 17:07:10 2016 -0800 tructured readme README.md commit 986b0297e9bd174cd46efb2033d928426a0f401d Author: Henri VINCENTI Date: Wed Jan 6 17:06:30 2016 -0800 Structured README README.md commit 6b2e366d37c4c4a6bd87345fcd727b96f7eb97df Author: Henri VINCENTI Date: Wed Jan 6 17:05:33 2016 -0800 Imporved README README.md commit ef0af9709de87c004917ab77e0b4bd86c64e3398 Author: Henri VINCENTI Date: Wed Jan 6 17:00:43 2016 -0800 Corrected typos in INSTALL FORTRAN INSTALL_FORTRAN.md commit 4d18dbd622f4b1a5800afb18779200d3db1e37a3 Author: Henri VINCENTI Date: Wed Jan 6 16:59:25 2016 -0800 Improved code README+ INSTALL description INSTALL_FORTRAN.md INSTALL_PYTHON.md README.md commit bf549183dc0eca6efb67fa1060464639dd077746 Author: Henri VINCENTI Date: Wed Jan 6 16:41:11 2016 -0800 Created one install file per language (Fortran/Python) INSTALL_FORTRAN.md INSTALL_PYTHON.md commit f28113491cdb35f3c7b34b486fe6712132ea0d5f Author: Henri VINCENTI Date: Wed Jan 6 16:39:36 2016 -0800 Removed input_file.pixr from main folder, put it as test.pixr in example_decks_fortran input_file.pixr commit 8c17e1ccf936aad87766452b3a2da1318f2d18a2 Author: Henri Vincenti Date: Wed Jan 6 14:16:05 2016 -0800 Updated test file example_scripts_python/test.py commit 81b4a72d256b37790631c77fa04f5907b4aa0b46 Author: Henri Vincenti Date: Wed Jan 6 14:03:00 2016 -0800 Inserted (idp) double precision integer in routines of old branch master Removed OpenMP directives from esirkepov_n current deposition Makefile Makefile_Forthon src/current_deposition.F90 src/diags.F90 src/submain.F90 commit 925419a1cc05481cf4f33c3478e3327516dfb668 Author: Henri Vincenti Date: Wed Jan 6 13:34:48 2016 -0800 Fixed bugs in precedent merge step form picsar-forthon to master Errors were in current deposition and diags.F90 files Makefile src/current_deposition.F90 src/diags.F90 commit 3f054ce88adc2339fed83ff902bd877ba39809a0 Merge: 553a040d e4be5154 Author: Henri Vincenti Date: Wed Jan 6 13:24:35 2016 -0800 Merge remote-tracking branch 'remotes/origin/picsar_forthon' commit e4be51548165a385cec0cd3a06c236f04ecb3038 Author: Henri Vincenti Date: Wed Jan 6 13:16:32 2016 -0800 Improved README_PYTHON.md file README_PYTHON.md commit e6faf750d2146d4f88a965cbd56b8919a48ec31c Author: Henri Vincenti Date: Wed Jan 6 11:16:56 2016 -0800 Added test rule for Fortran Makefile .gitignore Makefile example_decks_fortran/test.pixr commit 90c326b30a168d89a5930ec1f822714f38e5cdbc Author: Henri Vincenti Date: Wed Jan 6 11:11:08 2016 -0800 Improved MakeFile fort Fortran version .gitignore Makefile commit 4ccdc4f5f2b967095d97e2be70c9b566e2b9de4c Author: Henri Vincenti Date: Wed Jan 6 11:04:00 2016 -0800 Improved README Python README_PYTHON.md commit af08299dd8d985bba307b345ef09df21ccf0bb34 Author: Henri Vincenti Date: Wed Jan 6 10:59:10 2016 -0800 Modified Makefile_Forthon to add Library paths Makefile_Forthon commit 6485d844d7cb911b8ff3b70f4be8dd62af04ff26 Author: Henri Vincenti Date: Wed Jan 6 10:56:13 2016 -0800 Modified READMME_PYTHON.md README_PYTHON.md commit bf8ec794610178a7d98ce8109853357ffd647cde Author: Henri Vincenti Date: Wed Jan 6 10:54:26 2016 -0800 Improved Makefile_Forthon and added rule "all" that call recursively rules clean parse build and test .gitignore Makefile_Forthon src/picsar_modules.F90 src/picsar_subroutines.F90 commit 836771f120d2f0fb1758e7a08b211aa6504efc23 Author: Henri Vincenti Date: Wed Jan 6 10:45:11 2016 -0800 Added tile attributes to module python_pointers in modules.F90 and modified routine point_to_tile to take into account these new atributes in tiling.F90 src/modules.F90 src/tiling.F90 commit dfad1a24861dd902d24c058d4d6e92abb0cf6940 Author: Henri Vincenti Date: Wed Jan 6 10:31:52 2016 -0800 Fixed bug for species name in subroutine set_particle_species_properties in tiling.F90 src/tiling.F90 commit c3209be3300bb7b1a5e4b5de7cfa2c0af19d38c6 Author: Jean-Luc Vay Date: Tue Jan 5 17:27:22 2016 -0800 Started adding link with Warp. .gitignore example_scripts_python/testwwarp.py src/modules.F90 src/mpi_routines.F90 src/picsar.F90 src/picsar.v src/picsar_modules.F90 src/picsar_subroutines.F90 src/tiling.F90 commit d1a61c84adacf964f044a8a1a52c275f43d91972 Author: Henri Vincenti Date: Tue Jan 5 15:38:11 2016 -0800 Modified readme python .gitignore README_PYTHON.md commit 10cbfc76dc7c5570ba7060a1b64214f2c30386c9 Author: Henri Vincenti Date: Tue Jan 5 15:34:26 2016 -0800 Last version with working MAkefile_Forthon Makefile_Forthon example_scripts_python/test.py input_file.pixr src/control_file.F90 src/modules.F90 src/picsar.F90 src/picsar.v src/picsar_modules.F90 src/picsar_subroutines.F90 src/tiling.F90 utils/forthon_parser.py commit 292995df9868729a42654acd18dd2e2321f20441 Author: Henri Vincenti Date: Tue Jan 5 12:58:18 2016 -0800 Created setup.py install file for python setup.py commit d263dd0feea85ec77d8d4d55998603227a474ad8 Author: Henri Vincenti Date: Tue Jan 5 12:42:46 2016 -0800 Restructured directory README_PYTHON.md example_decks_fortran/input_file.pixr example_scripts_python/postproc/PyLoadArrayPicssar.py example_scripts_python/postproc/plot_field_piccsar.py example_scripts_python/postproc/test_divergence_picssar.py utils/forthon_parser.py commit 553a040d45ddb0029a760784549ca797f0c22b57 Author: Henri Vincenti Date: Tue Jan 5 12:30:11 2016 -0800 Added vectorized routines versions for charge deposition in diags.F90 and current deposition in current_deposition.F90 current_deposition.F90 diags.F90 commit d724987e9d8ebdbf7ebfb93f2af95e36a6bcced8 Author: Henri Vincenti Date: Mon Jan 4 13:53:27 2016 -0800 Added vectorized current and charge deposition routines to diags.F90 and current_deposition.F90 current_deposition.F90 diags.F90 commit 9b5c59d0dd2b5fa421a4cb121563e517cbfed67c Author: Henri Vincenti Date: Thu Dec 17 17:39:08 2015 -0800 Changed structure of repo example_decks/input_file.pixr src/boundary.F90 src/control_file.F90 src/current_deposition.F90 src/diags.F90 src/field_gathering.F90 src/main.F90 src/maxwell.F90 src/modules.F90 src/mpi_derived_types.F90 src/mpi_routines.F90 src/particles_push.F90 src/simple_io.F90 src/submain.F90 src/tiling.F90 commit 64474879cd4ea59b9249fd3f8433e1955eecc2e9 Author: Henri Vincenti Date: Thu Dec 17 17:31:36 2015 -0800 Modified source files of PICSAR to comply with Forthon parser standard boundary.F90 control_file.F90 current_deposition.F90 diags.F90 field_gathering.F90 maxwell.F90 modules.F90 mpi_derived_types.F90 mpi_routines.F90 particles_push.F90 simple_io.F90 submain.F90 tiling.F90 commit 24a1e51e1fadab2f7f6e882b6c470cdfaf68b4d5 Author: Henri Vincenti Date: Mon Dec 7 15:44:37 2015 -0800 Some more commenting current_deposition.F90 commit c761eddecf129c627baa3d2f9c491dc684ccf1c2 Author: Henri Vincenti Date: Mon Dec 7 15:37:07 2015 -0800 Inserted comments current_deposition.F90 diags.F90 commit 8abb9db697ed384a268c6c4ceeb548ec9ff23e34 Author: Henri Vincenti Date: Mon Dec 7 15:29:13 2015 -0800 Fixed a major bug in the tile reduction operation. Synchronization was added before tile reduction in each direction X, Y, Z New implementation was successfully tested current_deposition.F90 diags.F90 input_file.pixr commit fec9a374ba0f3f7ca54142b51063bdfb64bb5116 Author: Henri VINCENTI Date: Sun Nov 1 18:47:35 2015 -0800 Removed reduction for charge deposition in diags.F90 diags.F90 modules.F90 tiling.F90 commit 7635a63770b947039c4dae79eafde28b9e3efa62 Author: Henri VINCENTI Date: Sun Nov 1 17:49:07 2015 -0800 - Fused loops on particles in push_particles routine - Removed reductions in current deposition by splitting loop on tiles in two subloops to avoid write conflicts : (i) Loop computing currents on each tile and adding current in center of each tile (ii) Loop adding guard cells to adjacent tiles current_deposition.F90 field_gathering.F90 input_file.pixr modules.F90 particles_push.F90 submain.F90 tiling.F90 commit 6a14a48c64bcbf2da337ce5edfcc01601c10cfe3 Author: Henri VINCENTI Date: Sun Nov 1 15:13:25 2015 -0800 Changed order of call to subroutines in step function in submain.F90 This new order allows for grouping particle subroutines and in particular field gather, pushxyz, pushv for enhancing cache reuse. particles_push.F90 submain.F90 commit 328ad5a92d5755bbb7f865fbe89ebf04beed6253 Author: Henri VINCENTI Date: Sun Oct 11 09:57:11 2015 -0700 corrected alignement directive error diags.F90 commit 0bd5818c7151463f6dcee74164cc523763ed2327 Author: Henri VINCENTI Date: Sun Oct 11 09:55:43 2015 -0700 modified vecHV diags.F90 commit f2f5ee3a74ec118ec86eacb0baac6c7539272165 Author: Henri VINCENTI Date: Sun Oct 11 09:44:38 2015 -0700 modified vecHV routine diags.F90 commit 310c404f19b721548d05e51e8078ae91210462a3 Author: Henri Vincenti Date: Fri Oct 9 14:02:10 2015 -0700 Added vectorized version of current deposition for CIC form factor diags.F90 commit 9f3a0cbd280e2c6c801e8fdad3638d84cc5a43d2 Author: Henri VINCENTI Date: Wed Oct 7 23:57:01 2015 +0000 README.md edited online with Bitbucket README.md commit 4e80c7e782bde986a83e291ab162f8921855c5be Author: Henri VINCENTI Date: Wed Oct 7 23:43:04 2015 +0000 README.md edited online with Bitbucket README.md commit 07e55021b56f8013fcd7907be558b4694029717b Merge: 9536bab3 4b071ae2 Author: Remi Lehe Date: Wed Oct 7 16:37:41 2015 -0700 Merged in picsar_tiling (pull request #1) Update master with tiling commit 4b071ae2f35a38466d8698aadce3391c5b2e8199 Author: Henri VINCENTI Date: Wed Oct 7 16:32:52 2015 -0700 replaced non portable RAND() function by CALL random_number routine which is standard to all compilers (intel, cray, gnu) tiling.F90 commit cd3b2cec30312585dd091aa9ec4cde8997d0aab6 Author: Remi Lehe Date: Sun Oct 4 16:30:46 2015 -0700 Suppressed output flag in input file input_file.pixr commit 9d33625788ffa3235694f7c21491d832f0809adc Author: Henri VINCENTI Date: Mon Sep 28 18:14:59 2015 -0700 Added MPI_INIT_THREAD modules.F90 mpi_routines.F90 commit 7d224f830237ad708a4f20d0d6f3d6195a9d4ecd Author: Henri Vincenti Date: Thu Sep 24 14:22:17 2015 -0700 First touch init for particles current_deposition.F90 field_gathering.F90 particles_push.F90 submain.F90 tiling.F90 commit 736c23e85f6ad7f65c2d58a16711eb1497e121c1 Author: Henri VINCENTI Date: Thu Sep 17 23:26:26 2015 +0000 README.md edited online with Bitbucket README.md commit 9536bab32cdd8b939f6f70dcc0d015d16e91e564 Author: Henri VINCENTI Date: Thu Sep 17 23:23:05 2015 +0000 README.md edited online with Bitbucket README.md commit 3577814f0f711317981e0d65ae8b403c64a8ec4f Author: Henri VINCENTI Date: Thu Sep 17 15:52:11 2015 -0700 ADDED OPENMP DIRECTIVES FOR TILING TESTED that the code staisfies POISSON TESTED both esirkepov and rho*v routines Makefile control_file.F90 current_deposition.F90 diags.F90 field_gathering.F90 input_file.pixr main.F90 maxwell.F90 modules.F90 mpi_routines.F90 particles_push.F90 submain.F90 tiling.F90 commit 57bc76b997cb8476e69340cb4fe1c65f8739bfdf Author: Henri VINCENTI Date: Wed Sep 16 14:55:30 2015 -0700 Added and tested rho*v current deposition .gitignore control_file.F90 current_deposition.F90 input_file.pixr submain.F90 commit a9d2e950ca53472e9ac3f29a539e1648c10404a9 Author: Henri VINCENTI Date: Wed Sep 16 00:07:48 2015 -0700 Added commande line arguments for tiling .gitignore Makefile boundary.F90 control_file.F90 current_deposition.F90 diags.F90 field_gathering.F90 input_file.pixr modules.F90 mpi_routines.F90 submain.F90 tiling.F90 commit a8d47adcbbfef9449686e6e6b3b466f4ad819f3f Author: Henri VINCENTI Date: Tue Sep 15 11:24:42 2015 -0700 Removed some PRINT * primarily intented for testing the code Added command line argument routine boundary.F90 control_file.F90 input_file.pixr main.F90 mpi_routines.F90 particles_push.F90 tiling.F90 commit a0edf51f0bd7eece41586869bf678b271e5663bb Author: Henri VINCENTI Date: Tue Sep 15 10:46:23 2015 -0700 Added lot of modifications to tiling routines and boundary routines Code was tested and verify Poisson up to Machine precision boundary.F90 control_file.F90 current_deposition.F90 diags.F90 field_gathering.F90 input_file.pixr modules.F90 mpi_routines.F90 particles_push.F90 submain.F90 tiling.F90 commit b5b9c80f907d66d3acfbd8c0e8d3f9ccd75baa36 Author: Henri Vincenti Date: Fri Sep 11 17:26:44 2015 -0700 First version with tiling Makefile boundary.F90 control_file.F90 current_deposition.F90 diags.F90 field_gathering.F90 input_file.pixr modules.F90 particles_push.F90 submain.F90 tiling.F90 commit 7552f99adc09f56f388e3edfe50925a80358e97d Author: Henri VINCENTI Date: Wed Aug 19 16:47:18 2015 +0000 README.md edited online with Bitbucket README.md commit 6940953cf7189269bebb81ccf10e45a0b2fe8f1c Author: Henri VINCENTI Date: Wed Aug 19 16:45:48 2015 +0000 README.md edited online with Bitbucket README.md commit 4490c6a55bd97ea052bf41e8ea688295dcde5ae9 Author: Henri VINCENTI Date: Fri Aug 14 13:09:44 2015 -0500 - Added auto decomposition for CPUS split (if no nprocx,y,z are set in input_dile) - Added nonblocking version of particle_bcs boundary.F90 input_file.pixr modules.F90 mpi_routines.F90 submain.F90 commit 32cc8706f6c9476487b704bc5ce2935987133c2a Author: Henri VINCENTI Date: Wed Aug 12 17:46:54 2015 -0500 Enabled nonblocking routines in boundary.F90 boundary.F90 commit bc713dbd26b6e5d3c3a8783fa15bccaa00f49b39 Author: Henri VINCENTI Date: Wed Aug 12 17:43:17 2015 -0500 Fixed bug in boundary conditions for particles: differentiated x_min from x_grid_min Intoduced MPI non blocking routines (suffix _nonblocking) for exchanging fields and currents! boundary.F90 control_file.F90 current_deposition.F90 field_gathering.F90 input_file.pixr mpi_routines.F90 submain.F90 commit a5d344b82d6fa5a274757ae170b7776ce218ae24 Author: Henri VINCENTI Date: Thu Aug 6 15:25:11 2015 -0500 Added init of nspecies in default init of control_file.F90 control_file.F90 commit 8781a7e3bbc405fd03573c16366fbf72f225483f Author: Henri VINCENTI Date: Fri Jul 31 17:37:25 2015 +0000 README.md edited online with Bitbucket README.md commit 7d9aaed2742d2294ae3d3c1d353387846a352c93 Author: Henri Vincenti Date: Thu Jul 30 18:18:00 2015 -0700 Modified README file README.md commit b685534ce125f3a37c551587c986190253931c59 Merge: 7d719021 54af51fb Author: Henri Vincenti Date: Thu Jul 30 17:52:08 2015 -0700 Merge branch 'add_input_file' Conflicts: Makefile commit 54af51fbf1c3a9f6c2ce4ba027a5ade7c5430e84 Author: Henri Vincenti Date: Thu Jul 30 17:38:16 2015 -0700 * Debugged particle_bcs (wrong variable ibuff and wrong particle removal algorithm) * Added last features of input_file.pixr boundary.F90 control_file.F90 current_deposition.F90 input_file.pixr main.F90 modules.F90 mpi_routines.F90 submain.F90 commit 06d9020dc4107717d0fe86d04de4d4cb5e3e171b Author: Henri Vincenti Date: Thu Jul 30 10:27:30 2015 -0700 Input file change and MPI send recv checks boundary.F90 control_file.F90 current_deposition.F90 input_file.pixr submain.F90 commit f75c0e62c5d37d0c5eace969825b7cac12dd87d6 Author: Henri Vincenti Date: Wed Jul 29 15:20:48 2015 -0700 Added new features the routines that read input files Added particle distribution initialization boundary.F90 control_file.F90 input_file.pixr main.F90 modules.F90 simple_io.F90 submain.F90 commit 7d7190219d675fbd2c4f9eace84f8dd080bbaf9b Author: Henri Vincenti Date: Tue Jul 28 20:06:12 2015 -0700 Modified Makefile (removed deprecated file gnufor.F90) Makefile commit 639e0d8c7a41dd9ec5be1d64ff5cda21c33161af Author: Henri Vincenti Date: Tue Jul 28 20:04:53 2015 -0700 Added some input file sections .gitignore Makefile control_file.F90 main.F90 mpi_routines.F90 commit b0dd44c975ec9847e4afbc631f3174c37d1caf09 Author: Henri Vincenti Date: Tue Jul 28 23:14:20 2015 +0000 README.md edited online with Bitbucket README.md commit 2e2a4678092262e86aad6fa4999845261c23a186 Author: Henri Vincenti Date: Tue Jul 28 16:12:47 2015 -0700 updated README README.md commit ebbfe905f95de42f2e2f66446687cc31467b68e8 Author: Henri Vincenti Date: Tue Jul 28 16:11:52 2015 -0700 updated README file README.md commit d7f4f2c628dcb56713560580d078c35c551167ef Author: Henri Vincenti Date: Tue Jul 28 16:10:30 2015 -0700 updated README file README.md commit ef2f98079dd14e64571173e9ef3a5c424ca50e33 Author: Henri Vincenti Date: Tue Jul 28 15:41:40 2015 -0700 ** Addes species type for handling mutliple species (Type(particle_species)) in shared_data.F90 ** Modified initall() routines to initialize particle distributions ** Substantially reorganized main PIC loop step() in submain.F90 for better lisibility: several global subroutines were created for that purpose (e.g push_particles_v etc.) ** cleaned boundary.F90 (one routine particle_bcs instead of one per species etc.) ** Cleaned mpi_subtype_control.F90 and renamed it in mpi_derived_type.F90 .gitignore Makefile boundary.F90 current_deposition.F90 diags.F90 field_gathering.F90 main.F90 maxwell.F90 modules.F90 mpi_derived_types.F90 mpi_routines.F90 mpi_subtype_control.F90 particles_push.F90 simple_io.F90 submain.F90 commit 3701c5e05755f7d41af4889fb6a275cdb426dc1c Author: Henri Vincenti Date: Mon Jul 27 11:22:36 2015 -0700 ** Modification of CPU split from number of cells to number of grid points (mpi_routines.F90) ** Added comments of some parts of the code ** Removed code sections initially intended for tests and irrelevant to the standard git version boundary.F90 main.F90 modules.F90 mpi_routines.F90 mpi_subtype_control.F90 submain.F90 commit 8d9d60f6697439cdc9546faafc8dbe42d26ee986 Author: Henri Vincenti Date: Thu Jul 23 18:22:34 2015 -0700 Added "a.out" file to discard in .gitignore .gitignore commit 591c0b7de832cb186f9453c98efe6ef804e36376 Author: Henri Vincenti Date: Thu Jul 23 18:16:39 2015 -0700 Modify mpi_routines.F90 (changed dbl to num) and added files to exclude (.o , .mod, .pxr) in .gitignore .gitignore mpi_routines.F90 commit 8f66ed25a1a5a3632c17d8f28aa99d9702a5ccf0 Author: Henri Vincenti Date: Thu Jul 23 18:13:19 2015 -0700 Add routine to load .pxr files in python postproc/PyLoadArrayPicssar.py commit fd751dac27f3e5e6e0288c95d52313240ceda0d2 Author: Henri Vincenti Date: Thu Jul 23 17:52:35 2015 -0700 Add read me files and postproc files README.md postproc/plot_field_piccsar.py postproc/test_divergence_picssar.py commit be9712eba7f4504203fc99363fc9ef7c97ebac0c Author: Henri Vincenti Date: Thu Jul 23 17:01:23 2015 -0700 add gitignore file .gitignore commit c3a598f671181976a68231b4fb49e50037fc5661 Author: Henri Vincenti Date: Thu Jul 23 16:59:59 2015 -0700 Add initial source files to git repository Makefile boundary.F90 current_deposition.F90 diags.F90 field_gathering.F90 main.F90 maxwell.F90 modules.F90 mpi_routines.F90 mpi_subtype_control.F90 particles_push.F90 simple_io.F90 submain.F90