Initializing AMReX (26.04-101-g59e9ebe6c1f3)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.04-101-g59e9ebe6c1f3) initialized WarpX (8eb71b6317a0) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.915326045 s; This step = 0.915326045 s; Avg. per step = 0.915326045 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.537840626 s; This step = 0.622514581 s; Avg. per step = 0.768920313 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.221544176 s; This step = 0.68370355 s; Avg. per step = 0.7405147253 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.674016679 TinyProfiler total time across processes [min...avg...max]: 2.679 ... 2.682 ... 2.685 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.057 1.088 1.125 41.90% FabArray::setVal() 177 0.3159 0.3294 0.3393 12.64% WarpX::MacroscopicEvolveE() 3 0.2866 0.3133 0.3368 12.55% amrex::Copy() 144 0.2481 0.2554 0.2647 9.86% FabArray::ParallelCopy_finish() 144 0.01415 0.1239 0.205 7.64% FabArray::LinComb() 72 0.07689 0.09868 0.1204 4.48% sample::Coarsen() 12 0.08717 0.09256 0.1069 3.98% FabArray::ParallelCopy_nowait() 144 0.0927 0.09454 0.09703 3.61% WarpX::EvolveB() 6 0.07969 0.08498 0.08988 3.35% WarpX::InitData() 1 0.03356 0.04575 0.07568 2.82% FillBoundary_finish() 144 0.0146 0.02801 0.04938 1.84% VisMF::Write(FabArray) 2 0.03557 0.03586 0.0367 1.37% PML::Exchange 72 0.02238 0.0237 0.0252 0.94% FillBoundary_nowait() 144 0.01531 0.01979 0.02433 0.91% WriteMultiLevelPlotfile() 2 0.0006169 0.01507 0.0204 0.76% WarpX::DampPML() 3 0.006842 0.01321 0.01842 0.69% main() 1 0.00142 0.001666 0.002059 0.08% FlushFormatPlotfile::WriteToFile() 2 3.343e-05 0.0002765 0.0009656 0.04% FabArray::ParallelCopy() 144 0.0003309 0.0004163 0.0005132 0.02% WarpX::Evolve::step 3 0.0001854 0.0003073 0.0005124 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003431 0.000392 0.0004498 0.02% ablastr::utils::communication::FillBoundary 144 0.00022 0.0002461 0.0002575 0.01% MultiFab::Copy() 72 0.0002036 0.000221 0.0002458 0.01% FabArray::FillBoundary() 126 0.0001367 0.0001474 0.0001593 0.01% Diagnostics::FilterComputePackFlush() 5 9.447e-05 0.0001093 0.0001214 0.00% ablastr::utils::communication::OverrideSync 18 1.556e-05 2.229e-05 3.205e-05 0.00% FAbArray::OverrideSync() 18 1.556e-05 1.915e-05 2.348e-05 0.00% OverrideSync_finish() 18 8.736e-06 1.125e-05 1.415e-05 0.00% REG::WarpX::Evolve() 1 2.396e-06 3.41e-06 5.916e-06 0.00% WarpX::Evolve() 1 2.754e-06 3.738e-06 5.517e-06 0.00% AmrMesh::MakeDistributionMap() 1 1.688e-06 2.762e-06 5.258e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 2.852e-06 3.2e-06 3.933e-06 0.00% Other 438 0.001327 0.005356 0.0108 0.40% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.669 2.671 2.674 99.60% REG::WarpX::Evolve() 1 2.345 2.346 2.347 87.40% WarpX::Evolve() 1 2.345 2.346 2.347 87.40% WarpX::Evolve::step 3 2.222 2.223 2.223 82.81% WarpX::OneStep_nosub() 3 1.955 1.955 1.956 72.84% PML::Exchange 72 0.7626 0.8564 0.9214 34.32% Diagnostics::FilterComputePackFlush() 5 0.2874 0.3263 0.3475 12.94% FabArray::setVal() 177 0.3159 0.3294 0.3393 12.64% WarpX::MacroscopicEvolveE() 3 0.2866 0.3133 0.3368 12.55% WarpX::InitData() 1 0.3204 0.3234 0.3258 12.13% ablastr::utils::communication::ParallelCopy 144 0.1126 0.2201 0.2995 11.15% FabArray::ParallelCopy() 144 0.1123 0.2197 0.2991 11.14% amrex::Copy() 144 0.2481 0.2554 0.2647 9.86% FabArray::ParallelCopy_finish() 144 0.01415 0.1239 0.205 7.64% MultiFab::Copy() 72 0.1215 0.1267 0.1345 5.01% FabArray::LinComb() 72 0.07689 0.09868 0.1204 4.48% sample::Coarsen() 12 0.08717 0.09256 0.1069 3.98% FabArray::ParallelCopy_nowait() 144 0.09358 0.09539 0.0978 3.64% WarpX::EvolveB() 6 0.07969 0.08498 0.08988 3.35% FlushFormatPlotfile::WriteToFile() 2 0.03629 0.05127 0.05712 2.13% WriteMultiLevelPlotfile() 2 0.03625 0.05099 0.05615 2.09% FillBoundary_finish() 144 0.0146 0.02801 0.04938 1.84% VisMF::Write(FabArray) 2 0.03557 0.03586 0.0367 1.37% ablastr::utils::communication::OverrideSync 18 0.003126 0.01886 0.0362 1.35% FAbArray::OverrideSync() 18 0.003111 0.01884 0.03616 1.35% OverrideSync_finish() 18 0.002605 0.01818 0.03551 1.32% ablastr::utils::communication::FillBoundary 144 0.02922 0.0299 0.03056 1.14% FabArray::FillBoundary() 126 0.02618 0.0272 0.02824 1.05% FillBoundary_nowait() 144 0.01579 0.02026 0.02483 0.92% WarpX::DampPML() 3 0.006842 0.01321 0.01842 0.69% AmrMesh::MakeDistributionMap() 1 1.493e-05 0.002996 0.005926 0.22% DistributionMapping::SFCProcessorMapDoIt() 1 1.32e-05 0.002993 0.005923 0.22% Other 438 0.006271 0.01378 0.02663 0.99% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.057 1.088 1.125 41.90% WarpX::MacroscopicEvolveE() 3 0.2866 0.3133 0.3368 12.55% amrex::Copy() 132 0.2291 0.2365 0.2457 9.15% FabArray::setVal() 132 0.2256 0.2293 0.232 8.64% FabArray::ParallelCopy_finish() 132 0.007489 0.0774 0.1369 5.10% FabArray::LinComb() 66 0.07173 0.0918 0.1118 4.16% WarpX::EvolveB() 6 0.07969 0.08498 0.08988 3.35% FabArray::ParallelCopy_nowait() 132 0.08535 0.08667 0.08867 3.30% FillBoundary_finish() 132 0.0141 0.02699 0.04789 1.78% sample::Coarsen() 6 0.03761 0.03781 0.0383 1.43% FillBoundary_nowait() 132 0.01405 0.01814 0.0222 0.83% PML::Exchange 66 0.01919 0.02049 0.02172 0.81% WarpX::DampPML() 3 0.006842 0.01321 0.01842 0.69% WriteMultiLevelPlotfile() 1 0.0001922 0.0005102 0.0006697 0.02% WarpX::Evolve::step 3 0.0001854 0.0003073 0.0005124 0.02% FabArray::ParallelCopy() 132 0.0003081 0.0003883 0.0004757 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003197 0.0003682 0.0004251 0.02% FlushFormatPlotfile::WriteToFile() 1 1.233e-05 7.649e-05 0.0002493 0.01% ablastr::utils::communication::FillBoundary 132 0.0002034 0.0002268 0.0002396 0.01% MultiFab::Copy() 66 0.0001915 0.0002084 0.0002338 0.01% FabArray::FillBoundary() 114 0.0001265 0.0001367 0.0001454 0.01% Diagnostics::FilterComputePackFlush() 4 5.248e-05 6.027e-05 6.713e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.556e-05 2.229e-05 3.205e-05 0.00% FAbArray::OverrideSync() 18 1.556e-05 1.915e-05 2.348e-05 0.00% OverrideSync_finish() 18 8.736e-06 1.125e-05 1.415e-05 0.00% REG::WarpX::Evolve() 1 2.396e-06 3.41e-06 5.916e-06 0.00% WarpX::Evolve() 1 2.754e-06 3.738e-06 5.517e-06 0.00% Other 369 0.01888 0.01922 0.01972 0.73% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.345 2.346 2.347 87.40% WarpX::Evolve() 1 2.345 2.346 2.347 87.40% WarpX::Evolve::step 3 2.222 2.223 2.223 82.81% WarpX::OneStep_nosub() 3 1.955 1.955 1.956 72.84% PML::Exchange 66 0.6882 0.7437 0.7887 29.37% WarpX::MacroscopicEvolveE() 3 0.2866 0.3133 0.3368 12.55% amrex::Copy() 132 0.2291 0.2365 0.2457 9.15% FabArray::setVal() 132 0.2256 0.2293 0.232 8.64% ablastr::utils::communication::ParallelCopy 132 0.09734 0.1655 0.2237 8.33% FabArray::ParallelCopy() 132 0.097 0.1651 0.2233 8.32% FabArray::ParallelCopy_finish() 132 0.007489 0.0774 0.1369 5.10% MultiFab::Copy() 66 0.113 0.1185 0.1264 4.71% Diagnostics::FilterComputePackFlush() 4 0.1233 0.1235 0.1238 4.61% FabArray::LinComb() 66 0.07173 0.0918 0.1118 4.16% WarpX::EvolveB() 6 0.07969 0.08498 0.08988 3.35% FabArray::ParallelCopy_nowait() 132 0.08601 0.0873 0.0892 3.32% FillBoundary_finish() 132 0.0141 0.02699 0.04789 1.78% sample::Coarsen() 6 0.03761 0.03781 0.0383 1.43% ablastr::utils::communication::OverrideSync 18 0.003126 0.01886 0.0362 1.35% FAbArray::OverrideSync() 18 0.003111 0.01884 0.03616 1.35% OverrideSync_finish() 18 0.002605 0.01818 0.03551 1.32% ablastr::utils::communication::FillBoundary 132 0.02635 0.02704 0.02771 1.03% FabArray::FillBoundary() 114 0.02333 0.02436 0.02542 0.95% FillBoundary_nowait() 132 0.01435 0.01845 0.02251 0.84% FlushFormatPlotfile::WriteToFile() 1 0.01823 0.01879 0.01932 0.72% WriteMultiLevelPlotfile() 1 0.01822 0.01872 0.01907 0.71% WarpX::DampPML() 3 0.006842 0.01321 0.01842 0.69% Other 369 0.02337 0.02482 0.02657 0.99% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 4 B 6 B 9 B 8192 KiB 8192 KiB 8192 KiB main() 280 3303 B 3307 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2172 B 2173 B 2175 B 2560 B 2560 B 2560 B WarpX::InitData() 12 730 B 737 B 741 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 167 MiB 182 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3059 KiB 3334 KiB 3484 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3033 B 4020 B 4898 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3223 B 3456 B 3883 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.04-101-g59e9ebe6c1f3) finalized