Initializing AMReX (26.08)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.08) initialized WarpX (79466d33388f) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.865763529 s; This step = 0.865763529 s; Avg. per step = 0.865763529 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.472654386 s; This step = 0.606890857 s; Avg. per step = 0.736327193 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.149136364 s; This step = 0.676481978 s; Avg. per step = 0.716378788 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.585541382 TinyProfiler total time across processes [min...avg...max]: 2.59 ... 2.593 ... 2.596 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.02 1.034 1.047 40.33% WarpX::MacroscopicEvolveE() 3 0.2918 0.3162 0.3391 13.06% FabArray::setVal() 177 0.3191 0.3279 0.3367 12.97% amrex::Copy() 144 0.2499 0.2578 0.267 10.28% FabArray::ParallelCopy_finish() 144 0.04118 0.08245 0.1335 5.14% FabArray::LinComb() 72 0.07708 0.09748 0.1169 4.50% sample::Coarsen() 12 0.09177 0.09853 0.1144 4.41% WarpX::EvolveB() 6 0.08599 0.09369 0.1004 3.87% FabArray::ParallelCopy_nowait() 144 0.08878 0.09129 0.09373 3.61% WarpX::InitData() 1 0.03101 0.04411 0.07109 2.74% VisMF::Write(FabArray) 2 0.0353 0.03865 0.0421 1.62% FillBoundary_finish() 144 0.006657 0.01821 0.03458 1.33% PML::Exchange 72 0.02262 0.02476 0.02716 1.05% FillBoundary_nowait() 144 0.01573 0.02003 0.02391 0.92% WriteMultiLevelPlotfile() 2 4.124e-05 0.016 0.023 0.89% WarpX::DampPML() 3 0.008856 0.01188 0.01511 0.58% DistributionMapping::LeastUsedCPUs() 1 1.077e-05 0.003024 0.006134 0.24% main() 1 0.001501 0.002128 0.002692 0.10% FlushFormatPlotfile::WriteToFile() 2 3.911e-05 0.0001675 0.0005311 0.02% WarpX::Evolve::step 3 0.000175 0.000315 0.000492 0.02% FabArray::ParallelCopy() 144 0.0003449 0.0004252 0.0004771 0.02% ablastr::utils::communication::ParallelCopy 144 0.000381 0.0004188 0.0004549 0.02% ablastr::utils::communication::FillBoundary 144 0.0002271 0.0002526 0.0002726 0.01% MultiFab::Copy() 72 0.0002208 0.0002282 0.0002348 0.01% FabArray::FillBoundary() 126 0.0001425 0.0001526 0.0001631 0.01% Diagnostics::FilterComputePackFlush() 5 0.0001024 0.0001203 0.0001355 0.01% ablastr::utils::communication::OverrideSync 18 1.773e-05 2.073e-05 2.467e-05 0.00% FAbArray::OverrideSync() 18 1.687e-05 1.844e-05 2.068e-05 0.00% OverrideSync_finish() 18 9.989e-06 1.083e-05 1.19e-05 0.00% AmrMesh::MakeDistributionMap() 1 1.718e-06 3.866e-06 6.17e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.001e-06 3.525e-06 4.007e-06 0.00% WarpX::Evolve() 1 2.536e-06 3.154e-06 3.693e-06 0.00% REG::WarpX::Evolve() 1 1.701e-06 2.24e-06 2.751e-06 0.00% Other 437 0.001313 0.002772 0.004645 0.18% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.58 2.583 2.586 99.58% REG::WarpX::Evolve() 1 2.274 2.277 2.279 87.78% WarpX::Evolve() 1 2.274 2.277 2.279 87.78% WarpX::Evolve::step 3 2.149 2.152 2.155 83.00% WarpX::OneStep_nosub() 3 1.877 1.877 1.877 72.30% PML::Exchange 72 0.7874 0.8155 0.8558 32.96% WarpX::MacroscopicEvolveE() 3 0.2918 0.3162 0.3391 13.06% FabArray::setVal() 177 0.3191 0.3279 0.3367 12.97% Diagnostics::FilterComputePackFlush() 5 0.2952 0.3119 0.3362 12.95% WarpX::InitData() 1 0.2983 0.3041 0.3099 11.93% amrex::Copy() 144 0.2499 0.2578 0.267 10.28% ablastr::utils::communication::ParallelCopy 144 0.1366 0.1754 0.2243 8.64% FabArray::ParallelCopy() 144 0.1361 0.175 0.2238 8.62% FabArray::ParallelCopy_finish() 144 0.04118 0.08245 0.1335 5.14% MultiFab::Copy() 72 0.1242 0.1285 0.133 5.12% FabArray::LinComb() 72 0.07708 0.09748 0.1169 4.50% sample::Coarsen() 12 0.09177 0.09853 0.1144 4.41% WarpX::EvolveB() 6 0.08599 0.09369 0.1004 3.87% FabArray::ParallelCopy_nowait() 144 0.08965 0.09213 0.09455 3.64% FlushFormatPlotfile::WriteToFile() 2 0.04185 0.05488 0.06531 2.52% WriteMultiLevelPlotfile() 2 0.0418 0.05471 0.06478 2.49% VisMF::Write(FabArray) 2 0.0353 0.03865 0.0421 1.62% FillBoundary_finish() 144 0.006657 0.01821 0.03458 1.33% ablastr::utils::communication::FillBoundary 144 0.02977 0.03026 0.0307 1.18% FabArray::FillBoundary() 126 0.02649 0.0274 0.02831 1.09% FillBoundary_nowait() 144 0.01619 0.02053 0.02454 0.95% ablastr::utils::communication::OverrideSync 18 0.001 0.008979 0.02141 0.82% FAbArray::OverrideSync() 18 0.0009812 0.008959 0.02138 0.82% OverrideSync_finish() 18 0.0002444 0.008322 0.02082 0.80% WarpX::DampPML() 3 0.008856 0.01188 0.01511 0.58% AmrMesh::MakeDistributionMap() 1 1.707e-05 0.003033 0.006146 0.24% DistributionMapping::SFCProcessorMapDoIt() 1 1.535e-05 0.003029 0.00614 0.24% DistributionMapping::LeastUsedCPUs() 1 1.077e-05 0.003024 0.006134 0.24% Other 437 0.006511 0.01265 0.01996 0.77% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.02 1.034 1.047 40.33% WarpX::MacroscopicEvolveE() 3 0.2918 0.3162 0.3391 13.06% amrex::Copy() 132 0.23 0.2379 0.2468 9.50% FabArray::setVal() 132 0.2301 0.232 0.2347 9.04% FabArray::LinComb() 66 0.07097 0.08976 0.1077 4.15% FabArray::ParallelCopy_finish() 132 0.02337 0.05924 0.101 3.89% WarpX::EvolveB() 6 0.08599 0.09369 0.1004 3.87% FabArray::ParallelCopy_nowait() 132 0.08132 0.08393 0.08651 3.33% sample::Coarsen() 6 0.03889 0.03912 0.03952 1.52% FillBoundary_finish() 132 0.006119 0.01731 0.03335 1.28% PML::Exchange 66 0.01971 0.02187 0.02437 0.94% FillBoundary_nowait() 132 0.01439 0.0184 0.02197 0.85% VisMF::Write(FabArray) 1 0.01765 0.01813 0.01862 0.72% WriteMultiLevelPlotfile() 1 1.459e-05 0.0004265 0.0006318 0.02% WarpX::Evolve::step 3 0.000175 0.000315 0.000492 0.02% FabArray::ParallelCopy() 132 0.0003202 0.0003957 0.0004434 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003613 0.0003953 0.0004306 0.02% ablastr::utils::communication::FillBoundary 132 0.000209 0.0002327 0.0002517 0.01% FlushFormatPlotfile::WriteToFile() 1 1.28e-05 7.381e-05 0.0002507 0.01% MultiFab::Copy() 66 0.0002078 0.0002155 0.0002214 0.01% FabArray::FillBoundary() 114 0.0001326 0.0001425 0.0001523 0.01% Diagnostics::FilterComputePackFlush() 4 5.838e-05 6.835e-05 7.573e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.773e-05 2.073e-05 2.467e-05 0.00% FAbArray::OverrideSync() 18 1.687e-05 1.844e-05 2.068e-05 0.00% OverrideSync_finish() 18 9.989e-06 1.083e-05 1.19e-05 0.00% WarpX::Evolve() 1 2.536e-06 3.154e-06 3.693e-06 0.00% REG::WarpX::Evolve() 1 1.701e-06 2.24e-06 2.751e-06 0.00% Other 371 0.009738 0.01295 0.01649 0.64% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.274 2.277 2.279 87.78% WarpX::Evolve() 1 2.274 2.277 2.279 87.78% WarpX::Evolve::step 3 2.149 2.152 2.155 83.00% WarpX::OneStep_nosub() 3 1.877 1.877 1.877 72.30% PML::Exchange 66 0.6995 0.7264 0.7579 29.19% WarpX::MacroscopicEvolveE() 3 0.2918 0.3162 0.3391 13.06% amrex::Copy() 132 0.23 0.2379 0.2468 9.50% FabArray::setVal() 132 0.2301 0.232 0.2347 9.04% ablastr::utils::communication::ParallelCopy 132 0.1107 0.1446 0.1838 7.08% FabArray::ParallelCopy() 132 0.1103 0.1442 0.1834 7.06% Diagnostics::FilterComputePackFlush() 4 0.1238 0.1244 0.125 4.81% MultiFab::Copy() 66 0.1152 0.1194 0.1235 4.76% FabArray::LinComb() 66 0.07097 0.08976 0.1077 4.15% FabArray::ParallelCopy_finish() 132 0.02337 0.05924 0.101 3.89% WarpX::EvolveB() 6 0.08599 0.09369 0.1004 3.87% FabArray::ParallelCopy_nowait() 132 0.08196 0.08455 0.08705 3.35% sample::Coarsen() 6 0.03889 0.03912 0.03952 1.52% FillBoundary_finish() 132 0.006119 0.01731 0.03335 1.28% ablastr::utils::communication::FillBoundary 132 0.02705 0.02755 0.02801 1.08% FabArray::FillBoundary() 114 0.02379 0.02471 0.02561 0.99% FillBoundary_nowait() 132 0.01472 0.01875 0.02242 0.86% ablastr::utils::communication::OverrideSync 18 0.001 0.008979 0.02141 0.82% FAbArray::OverrideSync() 18 0.0009812 0.008959 0.02138 0.82% OverrideSync_finish() 18 0.0002444 0.008322 0.02082 0.80% FlushFormatPlotfile::WriteToFile() 1 0.01831 0.01866 0.01946 0.75% WriteMultiLevelPlotfile() 1 0.01829 0.01859 0.01921 0.74% VisMF::Write(FabArray) 1 0.01765 0.01813 0.01862 0.72% Other 371 0.01447 0.01886 0.02359 0.91% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 6 B 7 B 9 B 8192 KiB 8192 KiB 8192 KiB main() 280 3303 B 3306 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2168 B 2170 B 2172 B 2560 B 2560 B 2560 B WarpX::InitData() 12 735 B 738 B 741 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 167 MiB 182 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3220 KiB 3280 KiB 3338 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3165 B 3883 B 4553 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 2857 B 3368 B 3827 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.08) finalized