Initializing AMReX (26.08-4-gcb098067c32e)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.08-4-gcb098067c32e) initialized WarpX (79466d33388f) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.861275022 s; This step = 0.861275022 s; Avg. per step = 0.861275022 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.48404803 s; This step = 0.622773008 s; Avg. per step = 0.742024015 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.158841045 s; This step = 0.674793015 s; Avg. per step = 0.7196136817 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.590367449 TinyProfiler total time across processes [min...avg...max]: 2.592 ... 2.597 ... 2.601 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.026 1.046 1.07 41.14% FabArray::setVal() 177 0.3182 0.3309 0.3411 13.11% WarpX::MacroscopicEvolveE() 3 0.2862 0.3118 0.3351 12.88% amrex::Copy() 144 0.2479 0.2535 0.2639 10.15% FabArray::ParallelCopy_finish() 144 0.03225 0.1052 0.1725 6.63% FabArray::LinComb() 72 0.07529 0.09698 0.1176 4.52% FabArray::ParallelCopy_nowait() 144 0.08835 0.09102 0.09287 3.57% WarpX::EvolveB() 6 0.07675 0.08382 0.09051 3.48% sample::Coarsen() 12 0.08159 0.08249 0.08375 3.22% WarpX::InitData() 1 0.03236 0.04613 0.0793 3.05% FillBoundary_finish() 144 0.02197 0.03674 0.06078 2.34% VisMF::Write(FabArray) 2 0.03497 0.03552 0.03625 1.39% PML::Exchange 72 0.02224 0.02362 0.02522 0.97% FillBoundary_nowait() 144 0.01514 0.02016 0.02514 0.97% WarpX::DampPML() 3 0.007239 0.01035 0.01191 0.46% DistributionMapping::LeastUsedCPUs() 1 1.465e-05 0.004183 0.008424 0.32% main() 1 0.00148 0.00218 0.002651 0.10% WriteMultiLevelPlotfile() 2 2.762e-05 0.001385 0.002148 0.08% FlushFormatPlotfile::WriteToFile() 2 3.278e-05 0.0002159 0.0007504 0.03% FabArray::ParallelCopy() 144 0.0003241 0.0004224 0.0005055 0.02% WarpX::Evolve::step 3 0.0001818 0.0003022 0.0004862 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003657 0.0004296 0.0004762 0.02% ablastr::utils::communication::FillBoundary 144 0.0002253 0.0002469 0.0002604 0.01% MultiFab::Copy() 72 0.0002203 0.0002298 0.0002367 0.01% FabArray::FillBoundary() 126 0.000137 0.0001414 0.0001471 0.01% Diagnostics::FilterComputePackFlush() 5 9.648e-05 0.0001029 0.0001127 0.00% ablastr::utils::communication::OverrideSync 18 1.798e-05 2.376e-05 2.932e-05 0.00% FAbArray::OverrideSync() 18 1.774e-05 1.98e-05 2.252e-05 0.00% OverrideSync_finish() 18 1.022e-05 1.176e-05 1.375e-05 0.00% AmrMesh::MakeDistributionMap() 1 2.712e-06 5.005e-06 7.435e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.16e-06 4.525e-06 5.009e-06 0.00% REG::WarpX::Evolve() 1 2.004e-06 2.703e-06 3.928e-06 0.00% WarpX::Evolve() 1 2.411e-06 2.719e-06 2.924e-06 0.00% Other 437 0.001354 0.00268 0.004149 0.16% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.583 2.586 2.59 99.59% REG::WarpX::Evolve() 1 2.28 2.281 2.281 87.70% WarpX::Evolve() 1 2.28 2.281 2.281 87.70% WarpX::Evolve::step 3 2.159 2.16 2.16 83.04% WarpX::OneStep_nosub() 3 1.892 1.893 1.893 72.77% PML::Exchange 72 0.7767 0.8323 0.8766 33.70% FabArray::setVal() 177 0.3182 0.3309 0.3411 13.11% WarpX::MacroscopicEvolveE() 3 0.2862 0.3118 0.3351 12.88% Diagnostics::FilterComputePackFlush() 5 0.2616 0.3024 0.3247 12.48% WarpX::InitData() 1 0.2992 0.3036 0.3086 11.86% ablastr::utils::communication::ParallelCopy 144 0.1254 0.198 0.2656 10.21% FabArray::ParallelCopy() 144 0.1251 0.1975 0.2652 10.19% amrex::Copy() 144 0.2479 0.2535 0.2639 10.15% FabArray::ParallelCopy_finish() 144 0.03225 0.1052 0.1725 6.63% MultiFab::Copy() 72 0.1219 0.1261 0.1334 5.13% FabArray::LinComb() 72 0.07529 0.09698 0.1176 4.52% FabArray::ParallelCopy_nowait() 144 0.08927 0.0919 0.09365 3.60% WarpX::EvolveB() 6 0.07675 0.08382 0.09051 3.48% sample::Coarsen() 12 0.08159 0.08249 0.08375 3.22% FillBoundary_finish() 144 0.02197 0.03674 0.06078 2.34% ablastr::utils::communication::OverrideSync 18 0.01019 0.02746 0.04774 1.84% FAbArray::OverrideSync() 18 0.01017 0.02743 0.04771 1.83% OverrideSync_finish() 18 0.009621 0.02673 0.0471 1.81% FlushFormatPlotfile::WriteToFile() 2 0.03565 0.03718 0.03916 1.51% WriteMultiLevelPlotfile() 2 0.03562 0.03696 0.03841 1.48% VisMF::Write(FabArray) 2 0.03497 0.03552 0.03625 1.39% ablastr::utils::communication::FillBoundary 144 0.02985 0.03046 0.03112 1.20% FabArray::FillBoundary() 126 0.02651 0.0276 0.02873 1.10% FillBoundary_nowait() 144 0.01561 0.02067 0.02579 0.99% WarpX::DampPML() 3 0.007239 0.01035 0.01191 0.46% AmrMesh::MakeDistributionMap() 1 2.341e-05 0.004194 0.008434 0.32% DistributionMapping::SFCProcessorMapDoIt() 1 2.069e-05 0.004189 0.008431 0.32% DistributionMapping::LeastUsedCPUs() 1 1.465e-05 0.004183 0.008424 0.32% Other 437 0.006565 0.01222 0.01778 0.68% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.026 1.046 1.07 41.14% WarpX::MacroscopicEvolveE() 3 0.2862 0.3118 0.3351 12.88% amrex::Copy() 132 0.2294 0.2346 0.2433 9.35% FabArray::setVal() 132 0.2274 0.2322 0.2349 9.03% FabArray::LinComb() 66 0.07006 0.09008 0.1094 4.21% FabArray::ParallelCopy_finish() 132 0.009547 0.05647 0.1002 3.85% WarpX::EvolveB() 6 0.07675 0.08382 0.09051 3.48% FabArray::ParallelCopy_nowait() 132 0.08125 0.0835 0.08525 3.28% FillBoundary_finish() 132 0.02146 0.03583 0.05948 2.29% sample::Coarsen() 6 0.03533 0.03555 0.03605 1.39% FillBoundary_nowait() 132 0.01389 0.01854 0.02315 0.89% PML::Exchange 66 0.01945 0.02066 0.0221 0.85% VisMF::Write(FabArray) 1 0.01771 0.01809 0.01841 0.71% WriteMultiLevelPlotfile() 1 1.556e-05 0.0005687 0.001074 0.04% WarpX::Evolve::step 3 0.0001818 0.0003022 0.0004862 0.02% FabArray::ParallelCopy() 132 0.0003021 0.0003932 0.0004693 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003418 0.0004025 0.0004443 0.02% FlushFormatPlotfile::WriteToFile() 1 1.229e-05 7.36e-05 0.0002481 0.01% ablastr::utils::communication::FillBoundary 132 0.0002077 0.0002281 0.0002408 0.01% MultiFab::Copy() 66 0.0002078 0.0002152 0.0002219 0.01% FabArray::FillBoundary() 114 0.0001272 0.0001311 0.0001369 0.01% Diagnostics::FilterComputePackFlush() 4 4.948e-05 5.49e-05 5.926e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.798e-05 2.376e-05 2.932e-05 0.00% FAbArray::OverrideSync() 18 1.774e-05 1.98e-05 2.252e-05 0.00% OverrideSync_finish() 18 1.022e-05 1.176e-05 1.375e-05 0.00% REG::WarpX::Evolve() 1 2.004e-06 2.703e-06 3.928e-06 0.00% WarpX::Evolve() 1 2.411e-06 2.719e-06 2.924e-06 0.00% Other 371 0.008144 0.01148 0.01344 0.52% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.28 2.281 2.281 87.70% WarpX::Evolve() 1 2.28 2.281 2.281 87.70% WarpX::Evolve::step 3 2.159 2.16 2.16 83.04% WarpX::OneStep_nosub() 3 1.892 1.893 1.893 72.77% PML::Exchange 66 0.6883 0.7192 0.7449 28.64% WarpX::MacroscopicEvolveE() 3 0.2862 0.3118 0.3351 12.88% amrex::Copy() 132 0.2294 0.2346 0.2433 9.35% FabArray::setVal() 132 0.2274 0.2322 0.2349 9.03% ablastr::utils::communication::ParallelCopy 132 0.09609 0.1414 0.1855 7.13% FabArray::ParallelCopy() 132 0.09571 0.141 0.1851 7.12% MultiFab::Copy() 66 0.1141 0.1179 0.124 4.77% Diagnostics::FilterComputePackFlush() 4 0.1208 0.1211 0.1214 4.67% FabArray::LinComb() 66 0.07006 0.09008 0.1094 4.21% FabArray::ParallelCopy_finish() 132 0.009547 0.05647 0.1002 3.85% WarpX::EvolveB() 6 0.07675 0.08382 0.09051 3.48% FabArray::ParallelCopy_nowait() 132 0.08196 0.08415 0.08581 3.30% FillBoundary_finish() 132 0.02146 0.03583 0.05948 2.29% ablastr::utils::communication::OverrideSync 18 0.01019 0.02746 0.04774 1.84% FAbArray::OverrideSync() 18 0.01017 0.02743 0.04771 1.83% OverrideSync_finish() 18 0.009621 0.02673 0.0471 1.81% sample::Coarsen() 6 0.03533 0.03555 0.03605 1.39% ablastr::utils::communication::FillBoundary 132 0.02713 0.02775 0.02841 1.09% FabArray::FillBoundary() 114 0.02382 0.02491 0.02604 1.00% FillBoundary_nowait() 132 0.01422 0.0189 0.02363 0.91% FlushFormatPlotfile::WriteToFile() 1 0.01827 0.01876 0.01935 0.74% WriteMultiLevelPlotfile() 1 0.01826 0.01869 0.0191 0.73% VisMF::Write(FabArray) 1 0.01771 0.01809 0.01841 0.71% Other 371 0.01287 0.01749 0.02078 0.80% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 5 B 6 B 10 B 8192 KiB 8192 KiB 8192 KiB main() 280 3300 B 3304 B 3309 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2176 B 2178 B 2180 B 2560 B 2560 B 2560 B WarpX::InitData() 12 734 B 736 B 739 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 181 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3218 KiB 3343 KiB 3418 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3408 B 4446 B 5469 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3162 B 3416 B 3752 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.08-4-gcb098067c32e) finalized