Initializing AMReX (26.08-6-g09dcef899fc3)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.08-6-g09dcef899fc3) initialized WarpX (79466d33388f) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.872808439 s; This step = 0.872808439 s; Avg. per step = 0.872808439 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.485520025 s; This step = 0.612711586 s; Avg. per step = 0.7427600125 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.164343795 s; This step = 0.67882377 s; Avg. per step = 0.7214479317 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.551200996 TinyProfiler total time across processes [min...avg...max]: 2.556 ... 2.559 ... 2.562 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9979 1.036 1.084 42.29% WarpX::MacroscopicEvolveE() 3 0.286 0.3122 0.3418 13.34% FabArray::setVal() 177 0.3213 0.3298 0.3391 13.24% amrex::Copy() 144 0.2466 0.2536 0.2628 10.26% FabArray::ParallelCopy_finish() 144 0.014 0.08583 0.1456 5.68% FabArray::LinComb() 72 0.07742 0.09816 0.1203 4.69% FabArray::ParallelCopy_nowait() 144 0.08982 0.09058 0.09123 3.56% WarpX::EvolveB() 6 0.07664 0.08176 0.0859 3.35% sample::Coarsen() 12 0.08237 0.08286 0.08414 3.28% FillBoundary_finish() 144 0.005611 0.04445 0.07275 2.84% WarpX::InitData() 1 0.03231 0.0361 0.0399 1.56% VisMF::Write(FabArray) 2 0.0347 0.03526 0.03603 1.41% PML::Exchange 72 0.02229 0.02339 0.02604 1.02% FillBoundary_nowait() 144 0.01506 0.01969 0.0248 0.97% WarpX::DampPML() 3 0.007918 0.01002 0.0134 0.52% WriteMultiLevelPlotfile() 2 2.8e-05 0.00136 0.002242 0.09% main() 1 0.001238 0.001491 0.00169 0.07% FlushFormatPlotfile::WriteToFile() 2 3.769e-05 0.0002227 0.0007663 0.03% FabArray::ParallelCopy() 144 0.0003271 0.0004259 0.0005204 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003521 0.0004166 0.0004961 0.02% WarpX::Evolve::step 3 0.0001892 0.0003204 0.00044 0.02% ablastr::utils::communication::FillBoundary 144 0.0002265 0.0002451 0.0002649 0.01% MultiFab::Copy() 72 0.0001977 0.0002199 0.0002397 0.01% FabArray::FillBoundary() 126 0.0001286 0.0001384 0.0001435 0.01% Diagnostics::FilterComputePackFlush() 5 9.108e-05 0.0001042 0.0001241 0.00% ablastr::utils::communication::OverrideSync 18 1.385e-05 2.24e-05 2.941e-05 0.00% FAbArray::OverrideSync() 18 1.565e-05 1.817e-05 2.145e-05 0.00% OverrideSync_finish() 18 1.095e-05 1.168e-05 1.232e-05 0.00% AmrMesh::MakeDistributionMap() 1 2.685e-06 6.129e-06 1.099e-05 0.00% REG::WarpX::Evolve() 1 2.417e-06 2.968e-06 3.389e-06 0.00% WarpX::Evolve() 1 2.444e-06 3.03e-06 3.386e-06 0.00% Other 439 0.001326 0.004122 0.007726 0.30% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.547 2.549 2.551 99.58% REG::WarpX::Evolve() 1 2.286 2.286 2.287 89.25% WarpX::Evolve() 1 2.286 2.286 2.287 89.25% WarpX::Evolve::step 3 2.164 2.165 2.166 84.52% WarpX::OneStep_nosub() 3 1.897 1.898 1.898 74.07% PML::Exchange 72 0.7549 0.8129 0.8613 33.62% WarpX::MacroscopicEvolveE() 3 0.286 0.3122 0.3418 13.34% FabArray::setVal() 177 0.3213 0.3298 0.3391 13.24% Diagnostics::FilterComputePackFlush() 5 0.2612 0.2734 0.2862 11.17% WarpX::InitData() 1 0.2589 0.2612 0.264 10.30% amrex::Copy() 144 0.2466 0.2536 0.2628 10.26% ablastr::utils::communication::ParallelCopy 144 0.1053 0.1781 0.2387 9.32% FabArray::ParallelCopy() 144 0.1049 0.1777 0.2382 9.30% FabArray::ParallelCopy_finish() 144 0.014 0.08583 0.1456 5.68% MultiFab::Copy() 72 0.117 0.1251 0.1338 5.22% FabArray::LinComb() 72 0.07742 0.09816 0.1203 4.69% FabArray::ParallelCopy_nowait() 144 0.09056 0.09143 0.09215 3.60% WarpX::EvolveB() 6 0.07664 0.08176 0.0859 3.35% sample::Coarsen() 12 0.08237 0.08286 0.08414 3.28% FillBoundary_finish() 144 0.005611 0.04445 0.07275 2.84% ablastr::utils::communication::OverrideSync 18 0.0009519 0.03509 0.05945 2.32% FAbArray::OverrideSync() 18 0.0009381 0.03507 0.05942 2.32% OverrideSync_finish() 18 0.0002081 0.03441 0.05883 2.30% FlushFormatPlotfile::WriteToFile() 2 0.03552 0.0369 0.03856 1.50% WriteMultiLevelPlotfile() 2 0.03548 0.03668 0.03779 1.48% VisMF::Write(FabArray) 2 0.0347 0.03526 0.03603 1.41% ablastr::utils::communication::FillBoundary 144 0.02964 0.03 0.0304 1.19% FabArray::FillBoundary() 126 0.02639 0.02718 0.0281 1.10% FillBoundary_nowait() 144 0.01549 0.02016 0.02528 0.99% WarpX::DampPML() 3 0.007918 0.01002 0.0134 0.52% AmrMesh::MakeDistributionMap() 1 1.889e-05 0.002003 0.003963 0.15% Other 439 0.006516 0.01408 0.02429 0.95% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9979 1.036 1.084 42.29% WarpX::MacroscopicEvolveE() 3 0.286 0.3122 0.3418 13.34% amrex::Copy() 132 0.2269 0.2347 0.244 9.52% FabArray::setVal() 132 0.2293 0.2317 0.2352 9.18% FabArray::ParallelCopy_finish() 132 0.0062 0.06607 0.1148 4.48% FabArray::LinComb() 66 0.07185 0.09088 0.1108 4.33% WarpX::EvolveB() 6 0.07664 0.08176 0.0859 3.35% FabArray::ParallelCopy_nowait() 132 0.08258 0.08329 0.08422 3.29% FillBoundary_finish() 132 0.005106 0.04351 0.07147 2.79% sample::Coarsen() 6 0.03575 0.03596 0.0364 1.42% PML::Exchange 66 0.0193 0.02046 0.02297 0.90% FillBoundary_nowait() 132 0.01382 0.01806 0.02277 0.89% VisMF::Write(FabArray) 1 0.01788 0.01805 0.0183 0.71% WriteMultiLevelPlotfile() 1 9.977e-06 0.0004601 0.0007263 0.03% FabArray::ParallelCopy() 132 0.0003043 0.0003941 0.0004852 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003294 0.0003918 0.0004703 0.02% WarpX::Evolve::step 3 0.0001892 0.0003204 0.00044 0.02% ablastr::utils::communication::FillBoundary 132 0.0002081 0.0002268 0.0002477 0.01% FlushFormatPlotfile::WriteToFile() 1 1.304e-05 7.377e-05 0.0002461 0.01% MultiFab::Copy() 66 0.0001866 0.0002076 0.0002271 0.01% FabArray::FillBoundary() 114 0.0001201 0.0001285 0.0001333 0.01% Diagnostics::FilterComputePackFlush() 4 4.913e-05 5.228e-05 5.498e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.385e-05 2.24e-05 2.941e-05 0.00% FAbArray::OverrideSync() 18 1.565e-05 1.817e-05 2.145e-05 0.00% OverrideSync_finish() 18 1.095e-05 1.168e-05 1.232e-05 0.00% REG::WarpX::Evolve() 1 2.417e-06 2.968e-06 3.389e-06 0.00% WarpX::Evolve() 1 2.444e-06 3.03e-06 3.386e-06 0.00% Other 371 0.008785 0.01107 0.01472 0.57% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.286 2.286 2.287 89.25% WarpX::Evolve() 1 2.286 2.286 2.287 89.25% WarpX::Evolve::step 3 2.164 2.165 2.166 84.52% WarpX::OneStep_nosub() 3 1.897 1.898 1.898 74.07% PML::Exchange 66 0.6828 0.7287 0.7664 29.91% WarpX::MacroscopicEvolveE() 3 0.286 0.3122 0.3418 13.34% amrex::Copy() 132 0.2269 0.2347 0.244 9.52% FabArray::setVal() 132 0.2293 0.2317 0.2352 9.18% ablastr::utils::communication::ParallelCopy 132 0.09004 0.1508 0.2007 7.83% FabArray::ParallelCopy() 132 0.08966 0.1504 0.2002 7.81% MultiFab::Copy() 66 0.1085 0.1171 0.1259 4.91% Diagnostics::FilterComputePackFlush() 4 0.1209 0.1212 0.1216 4.75% FabArray::ParallelCopy_finish() 132 0.0062 0.06607 0.1148 4.48% FabArray::LinComb() 66 0.07185 0.09088 0.1108 4.33% WarpX::EvolveB() 6 0.07664 0.08176 0.0859 3.35% FabArray::ParallelCopy_nowait() 132 0.08313 0.08392 0.08493 3.31% FillBoundary_finish() 132 0.005106 0.04351 0.07147 2.79% ablastr::utils::communication::OverrideSync 18 0.0009519 0.03509 0.05945 2.32% FAbArray::OverrideSync() 18 0.0009381 0.03507 0.05942 2.32% OverrideSync_finish() 18 0.0002081 0.03441 0.05883 2.30% sample::Coarsen() 6 0.03575 0.03596 0.0364 1.42% ablastr::utils::communication::FillBoundary 132 0.02689 0.02725 0.02766 1.08% FabArray::FillBoundary() 114 0.02364 0.02445 0.02538 0.99% FillBoundary_nowait() 132 0.01412 0.01838 0.02307 0.90% FlushFormatPlotfile::WriteToFile() 1 0.01811 0.01862 0.01911 0.75% WriteMultiLevelPlotfile() 1 0.0181 0.01854 0.01886 0.74% VisMF::Write(FabArray) 1 0.01788 0.01805 0.0183 0.71% Other 371 0.01351 0.01693 0.02164 0.84% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 5 B 7 B 10 B 8192 KiB 8192 KiB 8192 KiB main() 280 3305 B 3308 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2217 B 2217 B 2219 B 2560 B 2560 B 2560 B WarpX::InitData() 12 735 B 738 B 741 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 167 MiB 182 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3172 KiB 3312 KiB 3407 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3733 B 4634 B 6270 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3082 B 3292 B 3563 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.08-6-g09dcef899fc3) finalized