Initializing AMReX (26.09-3-gf3531b15b7f4)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-3-gf3531b15b7f4) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.864263756 s; This step = 0.864263756 s; Avg. per step = 0.864263756 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.474510234 s; This step = 0.610246478 s; Avg. per step = 0.737255117 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.153737087 s; This step = 0.679226853 s; Avg. per step = 0.7179123623 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.582970352 TinyProfiler total time across processes [min...avg...max]: 2.591 ... 2.593 ... 2.595 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.007 1.038 1.057 40.74% FabArray::setVal() 177 0.3339 0.3462 0.3631 13.99% WarpX::MacroscopicEvolveE() 3 0.2873 0.3161 0.3452 13.30% amrex::Copy() 144 0.2454 0.2542 0.2645 10.19% FabArray::ParallelCopy_finish() 144 0.02384 0.09677 0.1642 6.33% FabArray::LinComb() 72 0.07713 0.09772 0.1176 4.53% FabArray::ParallelCopy_nowait() 144 0.08901 0.09147 0.09361 3.61% WarpX::EvolveB() 6 0.07482 0.08626 0.09195 3.54% sample::Coarsen() 12 0.08688 0.08742 0.08802 3.39% FillBoundary_finish() 144 0.007916 0.02912 0.0622 2.40% WarpX::InitData() 1 0.03441 0.04027 0.05019 1.93% VisMF::Write(FabArray) 2 0.03515 0.03539 0.03602 1.39% PML::Exchange 72 0.02129 0.02406 0.0269 1.04% FillBoundary_nowait() 144 0.01505 0.01981 0.02491 0.96% WarpX::DampPML() 3 0.007829 0.01044 0.0119 0.46% WriteMultiLevelPlotfile() 2 0.0004637 0.001373 0.001853 0.07% main() 1 0.00106 0.001523 0.001812 0.07% FlushFormatPlotfile::WriteToFile() 2 3.76e-05 0.0001917 0.0006339 0.02% FabArray::ParallelCopy() 144 0.0003481 0.0004085 0.0004955 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003768 0.0004199 0.0004781 0.02% WarpX::Evolve::step 3 0.0001806 0.0002989 0.0004763 0.02% ablastr::utils::communication::FillBoundary 144 0.0002405 0.0002514 0.0002616 0.01% MultiFab::Copy() 72 0.0002131 0.0002241 0.0002381 0.01% FabArray::FillBoundary() 126 0.0001289 0.0001392 0.0001486 0.01% Diagnostics::FilterComputePackFlush() 5 0.0001012 0.0001114 0.0001296 0.00% ablastr::utils::communication::OverrideSync 18 1.669e-05 2.321e-05 3.393e-05 0.00% FAbArray::OverrideSync() 18 1.629e-05 1.959e-05 2.498e-05 0.00% OverrideSync_finish() 18 9.409e-06 1.137e-05 1.29e-05 0.00% WarpX::Evolve() 1 2.599e-06 3.078e-06 3.574e-06 0.00% REG::WarpX::Evolve() 1 1.922e-06 2.283e-06 2.644e-06 0.00% Other 440 0.001392 0.003235 0.004987 0.19% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.581 2.582 2.583 99.52% REG::WarpX::Evolve() 1 2.278 2.278 2.278 87.79% WarpX::Evolve() 1 2.278 2.278 2.278 87.79% WarpX::Evolve::step 3 2.154 2.154 2.155 83.02% WarpX::OneStep_nosub() 3 1.886 1.887 1.887 72.71% PML::Exchange 72 0.7618 0.8234 0.8817 33.97% FabArray::setVal() 177 0.3339 0.3462 0.3631 13.99% WarpX::MacroscopicEvolveE() 3 0.2873 0.3161 0.3452 13.30% Diagnostics::FilterComputePackFlush() 5 0.2676 0.2951 0.3118 12.01% WarpX::InitData() 1 0.3006 0.302 0.303 11.67% amrex::Copy() 144 0.2454 0.2542 0.2645 10.19% ablastr::utils::communication::ParallelCopy 144 0.1182 0.1899 0.255 9.82% FabArray::ParallelCopy() 144 0.1178 0.1895 0.2545 9.81% FabArray::ParallelCopy_finish() 144 0.02384 0.09677 0.1642 6.33% MultiFab::Copy() 72 0.1201 0.1267 0.1342 5.17% FabArray::LinComb() 72 0.07713 0.09772 0.1176 4.53% FabArray::ParallelCopy_nowait() 144 0.08988 0.09234 0.09467 3.65% WarpX::EvolveB() 6 0.07482 0.08626 0.09195 3.54% sample::Coarsen() 12 0.08688 0.08742 0.08802 3.39% FillBoundary_finish() 144 0.007916 0.02912 0.0622 2.40% ablastr::utils::communication::OverrideSync 18 0.001059 0.01899 0.04834 1.86% FAbArray::OverrideSync() 18 0.001042 0.01896 0.04831 1.86% OverrideSync_finish() 18 0.0001795 0.01812 0.04746 1.83% FlushFormatPlotfile::WriteToFile() 2 0.03661 0.03702 0.03737 1.44% WriteMultiLevelPlotfile() 2 0.03658 0.03683 0.03709 1.43% VisMF::Write(FabArray) 2 0.03515 0.03539 0.03602 1.39% ablastr::utils::communication::FillBoundary 144 0.03028 0.0309 0.03137 1.21% FabArray::FillBoundary() 126 0.02709 0.02806 0.02892 1.11% FillBoundary_nowait() 144 0.01548 0.02026 0.02539 0.98% WarpX::DampPML() 3 0.007829 0.01044 0.0119 0.46% Other 440 0.007104 0.01348 0.01902 0.73% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.007 1.038 1.057 40.74% WarpX::MacroscopicEvolveE() 3 0.2873 0.3161 0.3452 13.30% amrex::Copy() 132 0.226 0.2347 0.2435 9.38% FabArray::setVal() 132 0.2252 0.2291 0.2313 8.91% FabArray::ParallelCopy_finish() 132 0.01617 0.06278 0.1111 4.28% FabArray::LinComb() 66 0.07093 0.08982 0.1089 4.19% WarpX::EvolveB() 6 0.07482 0.08626 0.09195 3.54% FabArray::ParallelCopy_nowait() 132 0.08218 0.08406 0.08633 3.33% FillBoundary_finish() 132 0.007419 0.02822 0.06093 2.35% sample::Coarsen() 6 0.03807 0.03836 0.03892 1.50% PML::Exchange 66 0.01765 0.02037 0.02327 0.90% FillBoundary_nowait() 132 0.01377 0.01815 0.0229 0.88% VisMF::Write(FabArray) 1 0.01798 0.01808 0.01835 0.71% WriteMultiLevelPlotfile() 1 0.0002009 0.0005935 0.000872 0.03% WarpX::Evolve::step 3 0.0001806 0.0002989 0.0004763 0.02% FabArray::ParallelCopy() 132 0.0003182 0.000376 0.0004641 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003549 0.0003946 0.0004479 0.02% FlushFormatPlotfile::WriteToFile() 1 1.322e-05 7.259e-05 0.000244 0.01% ablastr::utils::communication::FillBoundary 132 0.0002236 0.000233 0.000242 0.01% MultiFab::Copy() 66 0.0002018 0.0002122 0.0002261 0.01% FabArray::FillBoundary() 114 0.0001188 0.0001294 0.0001388 0.01% Diagnostics::FilterComputePackFlush() 4 5.308e-05 5.574e-05 5.87e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.669e-05 2.321e-05 3.393e-05 0.00% FAbArray::OverrideSync() 18 1.629e-05 1.959e-05 2.498e-05 0.00% OverrideSync_finish() 18 9.409e-06 1.137e-05 1.29e-05 0.00% WarpX::Evolve() 1 2.599e-06 3.078e-06 3.574e-06 0.00% REG::WarpX::Evolve() 1 1.922e-06 2.283e-06 2.644e-06 0.00% Other 371 0.00873 0.01149 0.01326 0.51% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.278 2.278 2.278 87.79% WarpX::Evolve() 1 2.278 2.278 2.278 87.79% WarpX::Evolve::step 3 2.154 2.154 2.155 83.02% WarpX::OneStep_nosub() 3 1.886 1.887 1.887 72.71% PML::Exchange 66 0.6879 0.7225 0.7637 29.42% WarpX::MacroscopicEvolveE() 3 0.2873 0.3161 0.3452 13.30% amrex::Copy() 132 0.226 0.2347 0.2435 9.38% FabArray::setVal() 132 0.2252 0.2291 0.2313 8.91% ablastr::utils::communication::ParallelCopy 132 0.1015 0.1483 0.1948 7.50% FabArray::ParallelCopy() 132 0.1011 0.1479 0.1943 7.49% MultiFab::Copy() 66 0.1112 0.1181 0.1249 4.81% Diagnostics::FilterComputePackFlush() 4 0.1238 0.124 0.1244 4.79% FabArray::ParallelCopy_finish() 132 0.01617 0.06278 0.1111 4.28% FabArray::LinComb() 66 0.07093 0.08982 0.1089 4.19% WarpX::EvolveB() 6 0.07482 0.08626 0.09195 3.54% FabArray::ParallelCopy_nowait() 132 0.0828 0.0847 0.08715 3.36% FillBoundary_finish() 132 0.007419 0.02822 0.06093 2.35% ablastr::utils::communication::OverrideSync 18 0.001059 0.01899 0.04834 1.86% FAbArray::OverrideSync() 18 0.001042 0.01896 0.04831 1.86% OverrideSync_finish() 18 0.0001795 0.01812 0.04746 1.83% sample::Coarsen() 6 0.03807 0.03836 0.03892 1.50% ablastr::utils::communication::FillBoundary 132 0.02754 0.02816 0.02864 1.10% FabArray::FillBoundary() 114 0.02437 0.02534 0.02621 1.01% FillBoundary_nowait() 132 0.01406 0.01845 0.02321 0.89% FlushFormatPlotfile::WriteToFile() 1 0.01821 0.01877 0.01914 0.74% WriteMultiLevelPlotfile() 1 0.01819 0.0187 0.0189 0.73% VisMF::Write(FabArray) 1 0.01798 0.01808 0.01835 0.71% Other 371 0.01386 0.01755 0.02032 0.78% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 5 B 6 B 7 B 8192 KiB 8192 KiB 8192 KiB main() 280 3305 B 3308 B 3310 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2180 B 2181 B 2182 B 2560 B 2560 B 2560 B WarpX::InitData() 12 725 B 732 B 737 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 181 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3159 KiB 3309 KiB 3445 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3405 B 4213 B 4846 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3154 B 3389 B 3571 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-3-gf3531b15b7f4) finalized