Initializing AMReX (26.09-7-g55dda725ff4d)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-7-g55dda725ff4d) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.907302713 s; This step = 0.907302713 s; Avg. per step = 0.907302713 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.517852493 s; This step = 0.61054978 s; Avg. per step = 0.7589262465 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.19590748 s; This step = 0.678054987 s; Avg. per step = 0.73196916 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.633870798 TinyProfiler total time across processes [min...avg...max]: 2.635 ... 2.64 ... 2.644 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.008 1.058 1.079 40.80% FabArray::setVal() 177 0.3201 0.3341 0.346 13.09% WarpX::MacroscopicEvolveE() 3 0.29 0.3165 0.3417 12.92% amrex::Copy() 144 0.2474 0.2554 0.2647 10.01% FabArray::ParallelCopy_finish() 144 0.06472 0.1012 0.1677 6.34% FabArray::LinComb() 72 0.07632 0.09608 0.1158 4.38% sample::Coarsen() 12 0.08559 0.09043 0.1035 3.92% FabArray::ParallelCopy_nowait() 144 0.08534 0.09043 0.09313 3.52% WarpX::EvolveB() 6 0.08068 0.08355 0.08764 3.31% WarpX::InitData() 1 0.0352 0.0476 0.07469 2.83% FillBoundary_finish() 144 0.01337 0.03779 0.06238 2.36% VisMF::Write(FabArray) 2 0.03481 0.03569 0.03672 1.39% PML::Exchange 72 0.02285 0.02421 0.0262 0.99% FillBoundary_nowait() 144 0.01502 0.01967 0.02442 0.92% WriteMultiLevelPlotfile() 2 3.901e-05 0.0132 0.01845 0.70% WarpX::DampPML() 3 0.006429 0.01006 0.01329 0.50% ParticleCopyPlan::doHandShake 1 1.852e-05 0.005627 0.01129 0.43% main() 1 0.001444 0.002137 0.002688 0.10% FlushFormatPlotfile::WriteToFile() 2 3.839e-05 0.0002119 0.0007148 0.03% WarpX::Evolve::step 3 0.0001839 0.0003453 0.000503 0.02% FabArray::ParallelCopy() 144 0.0003836 0.0004274 0.0004727 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003695 0.0004111 0.0004699 0.02% ablastr::utils::communication::FillBoundary 144 0.0002328 0.0002527 0.0002722 0.01% MultiFab::Copy() 72 0.0001957 0.0002154 0.0002265 0.01% FabArray::FillBoundary() 126 0.000137 0.0001473 0.0001589 0.01% Diagnostics::FilterComputePackFlush() 5 0.0001011 0.0001109 0.0001219 0.00% ablastr::utils::communication::OverrideSync 18 1.726e-05 2.243e-05 2.813e-05 0.00% FAbArray::OverrideSync() 18 1.58e-05 1.873e-05 2.196e-05 0.00% AmrMesh::MakeDistributionMap() 1 2.18e-06 6.594e-06 1.341e-05 0.00% OverrideSync_finish() 18 8.187e-06 1.125e-05 1.325e-05 0.00% ParticleCopyPlan::build 1 3.659e-06 6.785e-06 1.129e-05 0.00% ParticleCopyPlan::buildMPIStart 1 6.616e-06 8.327e-06 1.038e-05 0.00% ParticleContainer::Redistribute_impl() 1 4.743e-06 6.115e-06 8.29e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.122e-06 4.638e-06 5.134e-06 0.00% WarpX::Evolve() 1 2.799e-06 3.207e-06 3.578e-06 0.00% REG::WarpX::Evolve() 1 2.182e-06 2.735e-06 3.351e-06 0.00% Other 434 0.001309 0.005731 0.01041 0.39% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.626 2.63 2.634 99.63% REG::WarpX::Evolve() 1 2.319 2.319 2.319 87.74% WarpX::Evolve() 1 2.319 2.319 2.319 87.74% WarpX::Evolve::step 3 2.196 2.197 2.198 83.12% WarpX::OneStep_nosub() 3 1.931 1.931 1.931 73.05% PML::Exchange 72 0.8043 0.8289 0.8801 33.29% FabArray::setVal() 177 0.3201 0.3341 0.346 13.09% WarpX::MacroscopicEvolveE() 3 0.29 0.3165 0.3417 12.92% Diagnostics::FilterComputePackFlush() 5 0.2794 0.2989 0.3199 12.10% WarpX::InitData() 1 0.3039 0.3086 0.3134 11.86% amrex::Copy() 144 0.2474 0.2554 0.2647 10.01% ablastr::utils::communication::ParallelCopy 144 0.1594 0.1933 0.2604 9.85% FabArray::ParallelCopy() 144 0.159 0.1929 0.26 9.83% FabArray::ParallelCopy_finish() 144 0.06472 0.1012 0.1677 6.34% MultiFab::Copy() 72 0.1217 0.1269 0.1325 5.01% FabArray::LinComb() 72 0.07632 0.09608 0.1158 4.38% sample::Coarsen() 12 0.08559 0.09043 0.1035 3.92% FabArray::ParallelCopy_nowait() 144 0.0862 0.09127 0.09388 3.55% WarpX::EvolveB() 6 0.08068 0.08355 0.08764 3.31% FillBoundary_finish() 144 0.01337 0.03779 0.06238 2.36% ablastr::utils::communication::OverrideSync 18 0.008674 0.02873 0.05702 2.16% FAbArray::OverrideSync() 18 0.008656 0.02871 0.05699 2.16% OverrideSync_finish() 18 0.007938 0.02809 0.05625 2.13% FlushFormatPlotfile::WriteToFile() 2 0.03626 0.04915 0.05431 2.05% WriteMultiLevelPlotfile() 2 0.03621 0.04894 0.05359 2.03% VisMF::Write(FabArray) 2 0.03481 0.03569 0.03672 1.39% ablastr::utils::communication::FillBoundary 144 0.02913 0.02969 0.03034 1.15% FabArray::FillBoundary() 126 0.02566 0.02675 0.02775 1.05% FillBoundary_nowait() 144 0.01546 0.02013 0.02488 0.94% WarpX::DampPML() 3 0.006429 0.01006 0.01329 0.50% ParticleContainer::Redistribute_impl() 1 0.0001102 0.005733 0.01141 0.43% ParticleCopyPlan::build 1 2.929e-05 0.005643 0.01131 0.43% ParticleCopyPlan::buildMPIStart 1 2.513e-05 0.005635 0.0113 0.43% ParticleCopyPlan::doHandShake 1 1.852e-05 0.005627 0.01129 0.43% AmrMesh::MakeDistributionMap() 1 2.047e-05 0.004226 0.008515 0.32% DistributionMapping::SFCProcessorMapDoIt() 1 1.829e-05 0.004219 0.008502 0.32% Other 434 0.006474 0.01211 0.0181 0.68% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.008 1.058 1.079 40.80% WarpX::MacroscopicEvolveE() 3 0.29 0.3165 0.3417 12.92% amrex::Copy() 132 0.228 0.2359 0.2448 9.26% FabArray::setVal() 132 0.229 0.232 0.2361 8.93% FabArray::ParallelCopy_finish() 132 0.0412 0.07631 0.1242 4.70% FabArray::LinComb() 66 0.06945 0.0885 0.1068 4.04% WarpX::EvolveB() 6 0.08068 0.08355 0.08764 3.31% FabArray::ParallelCopy_nowait() 132 0.07821 0.08312 0.08552 3.24% FillBoundary_finish() 132 0.01288 0.03689 0.06184 2.34% sample::Coarsen() 6 0.037 0.03719 0.03766 1.42% PML::Exchange 66 0.02001 0.0213 0.0232 0.88% FillBoundary_nowait() 132 0.01371 0.01801 0.02239 0.85% VisMF::Write(FabArray) 1 0.01788 0.01816 0.01849 0.70% WriteMultiLevelPlotfile() 1 1.619e-05 0.0004978 0.0008542 0.03% WarpX::Evolve::step 3 0.0001839 0.0003453 0.000503 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003448 0.0003861 0.0004436 0.02% FabArray::ParallelCopy() 132 0.0003527 0.000396 0.000437 0.02% ablastr::utils::communication::FillBoundary 132 0.0002134 0.0002344 0.0002524 0.01% FlushFormatPlotfile::WriteToFile() 1 1.327e-05 7.31e-05 0.0002511 0.01% MultiFab::Copy() 66 0.0001852 0.0002025 0.0002151 0.01% FabArray::FillBoundary() 114 0.0001268 0.0001365 0.0001471 0.01% Diagnostics::FilterComputePackFlush() 4 5.074e-05 5.431e-05 5.883e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.726e-05 2.243e-05 2.813e-05 0.00% FAbArray::OverrideSync() 18 1.58e-05 1.873e-05 2.196e-05 0.00% OverrideSync_finish() 18 8.187e-06 1.125e-05 1.325e-05 0.00% WarpX::Evolve() 1 2.799e-06 3.207e-06 3.578e-06 0.00% REG::WarpX::Evolve() 1 2.182e-06 2.735e-06 3.351e-06 0.00% Other 371 0.00731 0.01108 0.01457 0.55% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.319 2.319 2.319 87.74% WarpX::Evolve() 1 2.319 2.319 2.319 87.74% WarpX::Evolve::step 3 2.196 2.197 2.198 83.12% WarpX::OneStep_nosub() 3 1.931 1.931 1.931 73.05% PML::Exchange 66 0.7157 0.7387 0.7702 29.13% WarpX::MacroscopicEvolveE() 3 0.29 0.3165 0.3417 12.92% amrex::Copy() 132 0.228 0.2359 0.2448 9.26% FabArray::setVal() 132 0.229 0.232 0.2361 8.93% ablastr::utils::communication::ParallelCopy 132 0.128 0.1608 0.2096 7.93% FabArray::ParallelCopy() 132 0.1276 0.1604 0.2092 7.91% FabArray::ParallelCopy_finish() 132 0.0412 0.07631 0.1242 4.70% MultiFab::Copy() 66 0.1132 0.1183 0.1232 4.66% Diagnostics::FilterComputePackFlush() 4 0.122 0.1222 0.1227 4.64% FabArray::LinComb() 66 0.06945 0.0885 0.1068 4.04% WarpX::EvolveB() 6 0.08068 0.08355 0.08764 3.31% FabArray::ParallelCopy_nowait() 132 0.07882 0.08373 0.08607 3.26% FillBoundary_finish() 132 0.01288 0.03689 0.06184 2.34% ablastr::utils::communication::OverrideSync 18 0.008674 0.02873 0.05702 2.16% FAbArray::OverrideSync() 18 0.008656 0.02871 0.05699 2.16% OverrideSync_finish() 18 0.007938 0.02809 0.05625 2.13% sample::Coarsen() 6 0.037 0.03719 0.03766 1.42% ablastr::utils::communication::FillBoundary 132 0.02638 0.02695 0.0276 1.04% FabArray::FillBoundary() 114 0.02292 0.02403 0.02504 0.95% FillBoundary_nowait() 132 0.01401 0.01832 0.02268 0.86% FlushFormatPlotfile::WriteToFile() 1 0.01835 0.01876 0.0194 0.73% WriteMultiLevelPlotfile() 1 0.01833 0.01869 0.01915 0.72% VisMF::Write(FabArray) 1 0.01788 0.01816 0.01849 0.70% Other 371 0.01217 0.01713 0.02194 0.83% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 6 B 7 B 9 B 8192 KiB 8192 KiB 8192 KiB main() 280 3299 B 3303 B 3308 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2177 B 2179 B 2181 B 2560 B 2560 B 2560 B WarpX::InitData() 12 732 B 734 B 736 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 181 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3074 KiB 3277 KiB 3371 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3263 B 4352 B 6036 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 2589 B 3289 B 3727 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-7-g55dda725ff4d) finalized