Initializing AMReX (26.09-120-g66028f892b7d)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-120-g66028f892b7d) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.862923284 s; This step = 0.862923284 s; Avg. per step = 0.862923284 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.471618568 s; This step = 0.608695284 s; Avg. per step = 0.735809284 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.144392651 s; This step = 0.672774083 s; Avg. per step = 0.7147975503 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.550755798 TinyProfiler total time across processes [min...avg...max]: 2.554 ... 2.557 ... 2.561 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9977 1.027 1.058 41.33% FabArray::setVal() 177 0.3224 0.3351 0.3485 13.61% WarpX::MacroscopicEvolveE() 3 0.2868 0.3128 0.3425 13.38% amrex::Copy() 144 0.2482 0.2549 0.2647 10.34% FabArray::ParallelCopy_finish() 144 0.01413 0.07904 0.137 5.35% FabArray::LinComb() 72 0.07601 0.09657 0.1172 4.58% FabArray::ParallelCopy_nowait() 144 0.0883 0.08971 0.09151 3.57% sample::Coarsen() 12 0.08915 0.08961 0.09005 3.52% WarpX::EvolveB() 6 0.07987 0.08459 0.08788 3.43% FillBoundary_finish() 144 0.006156 0.03415 0.06445 2.52% WarpX::InitData() 1 0.033 0.03666 0.0403 1.57% VisMF::Write(FabArray) 2 0.03405 0.03464 0.03557 1.39% FillBoundary_nowait() 144 0.01515 0.01965 0.02414 0.94% PML::Exchange 72 0.02268 0.02346 0.02411 0.94% WarpX::DampPML() 3 0.007672 0.01116 0.01547 0.60% ParticleCopyPlan::doHandShake 1 1.341e-05 0.00648 0.01297 0.51% main() 1 0.001531 0.002417 0.003203 0.13% WriteMultiLevelPlotfile() 2 0.0006995 0.001178 0.001454 0.06% FlushFormatPlotfile::WriteToFile() 2 3.47e-05 0.0001865 0.0006325 0.02% FabArray::ParallelCopy() 144 0.0003253 0.0004372 0.0005708 0.02% WarpX::Evolve::step 3 0.0001671 0.0002907 0.0004419 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003823 0.0004059 0.0004249 0.02% ablastr::utils::communication::FillBoundary 144 0.0002386 0.00026 0.0002813 0.01% MultiFab::Copy() 72 0.0001892 0.0002246 0.0002443 0.01% FabArray::FillBoundary() 126 0.0001409 0.0001454 0.0001501 0.01% Diagnostics::FilterComputePackFlush() 5 9.23e-05 0.0001008 0.0001152 0.00% ablastr::utils::communication::OverrideSync 18 1.538e-05 2.251e-05 2.842e-05 0.00% FAbArray::OverrideSync() 18 1.446e-05 1.989e-05 2.606e-05 0.00% AmrMesh::MakeDistributionMap() 1 2.778e-06 1.188e-05 1.86e-05 0.00% ParticleCopyPlan::build 1 3.313e-06 8.478e-06 1.479e-05 0.00% ParticleCopyPlan::buildMPIStart 1 6.748e-06 8.831e-06 1.248e-05 0.00% OverrideSync_finish() 18 9.447e-06 1.106e-05 1.211e-05 0.00% ParticleContainer::Redistribute_impl() 1 4.401e-06 6.265e-06 8.47e-06 0.00% WarpX::Evolve() 1 2.336e-06 2.735e-06 3.044e-06 0.00% REG::WarpX::Evolve() 1 1.903e-06 2.435e-06 2.949e-06 0.00% Other 435 0.001257 0.005621 0.01004 0.39% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.543 2.547 2.551 99.62% REG::WarpX::Evolve() 1 2.268 2.269 2.269 88.62% WarpX::Evolve() 1 2.268 2.269 2.269 88.62% WarpX::Evolve::step 3 2.144 2.145 2.145 83.78% WarpX::OneStep_nosub() 3 1.877 1.878 1.878 73.34% PML::Exchange 72 0.7537 0.8055 0.8516 33.26% FabArray::setVal() 177 0.3224 0.3351 0.3485 13.61% WarpX::MacroscopicEvolveE() 3 0.2868 0.3128 0.3425 13.38% Diagnostics::FilterComputePackFlush() 5 0.2654 0.2771 0.2896 11.31% WarpX::InitData() 1 0.2716 0.2759 0.2805 10.95% amrex::Copy() 144 0.2482 0.2549 0.2647 10.34% ablastr::utils::communication::ParallelCopy 144 0.1058 0.1704 0.2277 8.89% FabArray::ParallelCopy() 144 0.1054 0.17 0.2273 8.88% FabArray::ParallelCopy_finish() 144 0.01413 0.07904 0.137 5.35% MultiFab::Copy() 72 0.1197 0.1262 0.1343 5.24% FabArray::LinComb() 72 0.07601 0.09657 0.1172 4.58% FabArray::ParallelCopy_nowait() 144 0.089 0.09055 0.09252 3.61% sample::Coarsen() 12 0.08915 0.08961 0.09005 3.52% WarpX::EvolveB() 6 0.07987 0.08459 0.08788 3.43% FillBoundary_finish() 144 0.006156 0.03415 0.06445 2.52% ablastr::utils::communication::OverrideSync 18 0.0008976 0.02492 0.05131 2.00% FAbArray::OverrideSync() 18 0.0008822 0.0249 0.05128 2.00% OverrideSync_finish() 18 0.000194 0.0242 0.0505 1.97% FlushFormatPlotfile::WriteToFile() 2 0.03521 0.03607 0.03775 1.47% WriteMultiLevelPlotfile() 2 0.03517 0.03588 0.03712 1.45% VisMF::Write(FabArray) 2 0.03405 0.03464 0.03557 1.39% ablastr::utils::communication::FillBoundary 144 0.02935 0.02986 0.0304 1.19% FabArray::FillBoundary() 126 0.0262 0.02711 0.02803 1.09% FillBoundary_nowait() 144 0.01559 0.02011 0.02461 0.96% WarpX::DampPML() 3 0.007672 0.01116 0.01547 0.60% ParticleContainer::Redistribute_impl() 1 0.0001075 0.006595 0.01311 0.51% ParticleCopyPlan::build 1 2.759e-05 0.006498 0.013 0.51% ParticleCopyPlan::buildMPIStart 1 2.016e-05 0.006489 0.01298 0.51% ParticleCopyPlan::doHandShake 1 1.341e-05 0.00648 0.01297 0.51% AmrMesh::MakeDistributionMap() 1 2.982e-05 0.004092 0.008057 0.31% Other 435 0.006184 0.01574 0.02529 0.99% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9977 1.027 1.058 41.33% WarpX::MacroscopicEvolveE() 3 0.2868 0.3128 0.3425 13.38% amrex::Copy() 132 0.2282 0.2355 0.2448 9.56% FabArray::setVal() 132 0.231 0.2324 0.2336 9.12% FabArray::LinComb() 66 0.07018 0.08904 0.1081 4.22% FabArray::ParallelCopy_finish() 132 0.008824 0.06203 0.1066 4.16% WarpX::EvolveB() 6 0.07987 0.08459 0.08788 3.43% FabArray::ParallelCopy_nowait() 132 0.08061 0.08233 0.08415 3.29% FillBoundary_finish() 132 0.0057 0.03323 0.0631 2.46% sample::Coarsen() 6 0.03835 0.03856 0.03902 1.52% FillBoundary_nowait() 132 0.01383 0.01801 0.02217 0.87% PML::Exchange 66 0.02012 0.02064 0.02118 0.83% VisMF::Write(FabArray) 1 0.01734 0.01779 0.01833 0.72% WriteMultiLevelPlotfile() 1 0.0002007 0.0004897 0.0006775 0.03% FabArray::ParallelCopy() 132 0.0003044 0.0004048 0.0005226 0.02% WarpX::Evolve::step 3 0.0001671 0.0002907 0.0004419 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003569 0.0003813 0.0004013 0.02% ablastr::utils::communication::FillBoundary 132 0.0002198 0.000241 0.0002595 0.01% FlushFormatPlotfile::WriteToFile() 1 1.309e-05 7.275e-05 0.0002474 0.01% MultiFab::Copy() 66 0.0001779 0.0002127 0.0002313 0.01% FabArray::FillBoundary() 114 0.0001323 0.0001362 0.0001404 0.01% Diagnostics::FilterComputePackFlush() 4 4.783e-05 5.151e-05 5.716e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.538e-05 2.251e-05 2.842e-05 0.00% FAbArray::OverrideSync() 18 1.446e-05 1.989e-05 2.606e-05 0.00% OverrideSync_finish() 18 9.447e-06 1.106e-05 1.211e-05 0.00% WarpX::Evolve() 1 2.336e-06 2.735e-06 3.044e-06 0.00% REG::WarpX::Evolve() 1 1.903e-06 2.435e-06 2.949e-06 0.00% Other 371 0.008519 0.0122 0.01679 0.66% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.268 2.269 2.269 88.62% WarpX::Evolve() 1 2.268 2.269 2.269 88.62% WarpX::Evolve::step 3 2.144 2.145 2.145 83.78% WarpX::OneStep_nosub() 3 1.877 1.878 1.878 73.34% PML::Exchange 66 0.683 0.7236 0.7592 29.65% WarpX::MacroscopicEvolveE() 3 0.2868 0.3128 0.3425 13.38% amrex::Copy() 132 0.2282 0.2355 0.2448 9.56% FabArray::setVal() 132 0.231 0.2324 0.2336 9.12% ablastr::utils::communication::ParallelCopy 132 0.09313 0.1458 0.1896 7.41% FabArray::ParallelCopy() 132 0.09277 0.1454 0.1892 7.39% MultiFab::Copy() 66 0.1107 0.1175 0.125 4.88% Diagnostics::FilterComputePackFlush() 4 0.1231 0.1237 0.1243 4.85% FabArray::LinComb() 66 0.07018 0.08904 0.1081 4.22% FabArray::ParallelCopy_finish() 132 0.008824 0.06203 0.1066 4.16% WarpX::EvolveB() 6 0.07987 0.08459 0.08788 3.43% FabArray::ParallelCopy_nowait() 132 0.08111 0.08296 0.08492 3.32% FillBoundary_finish() 132 0.0057 0.03323 0.0631 2.46% ablastr::utils::communication::OverrideSync 18 0.0008976 0.02492 0.05131 2.00% FAbArray::OverrideSync() 18 0.0008822 0.0249 0.05128 2.00% OverrideSync_finish() 18 0.000194 0.0242 0.0505 1.97% sample::Coarsen() 6 0.03835 0.03856 0.03902 1.52% ablastr::utils::communication::FillBoundary 132 0.02659 0.02712 0.02765 1.08% FabArray::FillBoundary() 114 0.02346 0.02439 0.02531 0.99% FillBoundary_nowait() 132 0.01413 0.01832 0.02248 0.88% FlushFormatPlotfile::WriteToFile() 1 0.01797 0.01838 0.01916 0.75% WriteMultiLevelPlotfile() 1 0.01795 0.01831 0.01891 0.74% VisMF::Write(FabArray) 1 0.01734 0.01779 0.01833 0.72% Other 371 0.01312 0.01792 0.02366 0.92% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 5 B 7 B 11 B 8192 KiB 8192 KiB 8192 KiB main() 280 3301 B 3304 B 3308 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2198 B 2199 B 2201 B 2560 B 2560 B 2560 B WarpX::InitData() 12 730 B 733 B 736 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 181 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3167 KiB 3280 KiB 3367 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3390 B 4337 B 5492 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3065 B 3233 B 3404 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-120-g66028f892b7d) finalized