Initializing AMReX (26.09-125-g523e7305089a)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-125-g523e7305089a) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.861218278 s; This step = 0.861218278 s; Avg. per step = 0.861218278 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.47000662 s; This step = 0.608788342 s; Avg. per step = 0.73500331 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.148105212 s; This step = 0.678098592 s; Avg. per step = 0.7160350707 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.590252592 TinyProfiler total time across processes [min...avg...max]: 2.594 ... 2.598 ... 2.601 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9945 1.027 1.067 41.05% FabArray::setVal() 177 0.3208 0.3304 0.3439 13.22% WarpX::MacroscopicEvolveE() 3 0.2864 0.313 0.3431 13.19% amrex::Copy() 144 0.2469 0.2527 0.2604 10.01% FabArray::ParallelCopy_finish() 144 0.03822 0.1123 0.1882 7.24% FabArray::LinComb() 72 0.07666 0.09746 0.1175 4.52% sample::Coarsen() 12 0.08963 0.09039 0.0913 3.51% FabArray::ParallelCopy_nowait() 144 0.08834 0.08926 0.08993 3.46% WarpX::EvolveB() 6 0.07834 0.08167 0.08522 3.28% FillBoundary_finish() 144 0.006445 0.04164 0.07436 2.86% WarpX::InitData() 1 0.03317 0.04362 0.06785 2.61% VisMF::Write(FabArray) 2 0.03613 0.04271 0.04957 1.91% PML::Exchange 72 0.02263 0.02392 0.02585 0.99% FillBoundary_nowait() 144 0.01509 0.01995 0.02458 0.95% WarpX::DampPML() 3 0.00677 0.009815 0.01414 0.54% DistributionMapping::LeastUsedCPUs() 1 1.599e-05 0.002871 0.005725 0.22% WriteMultiLevelPlotfile() 2 0.0006836 0.001624 0.002325 0.09% main() 1 0.001116 0.001712 0.002136 0.08% FlushFormatPlotfile::WriteToFile() 2 2.976e-05 0.0002287 0.0008051 0.03% ablastr::utils::communication::ParallelCopy 144 0.0003393 0.0004018 0.0005099 0.02% FabArray::ParallelCopy() 144 0.0003303 0.0004089 0.0004869 0.02% WarpX::Evolve::step 3 0.0001836 0.0002889 0.0004339 0.02% FabArray::FillBoundary() 126 0.0001407 0.0001909 0.0003111 0.01% ablastr::utils::communication::FillBoundary 144 0.0002283 0.0002446 0.0002672 0.01% MultiFab::Copy() 72 0.0002039 0.0002294 0.0002521 0.01% Diagnostics::FilterComputePackFlush() 5 9.762e-05 9.908e-05 0.0001014 0.00% ablastr::utils::communication::OverrideSync 18 1.575e-05 2.264e-05 2.858e-05 0.00% FAbArray::OverrideSync() 18 1.501e-05 1.975e-05 2.271e-05 0.00% OverrideSync_finish() 18 1.163e-05 1.232e-05 1.308e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 2.893e-06 4.419e-06 6.764e-06 0.00% AmrMesh::MakeDistributionMap() 1 1.798e-06 2.696e-06 5.136e-06 0.00% WarpX::Evolve() 1 2.587e-06 2.857e-06 3.069e-06 0.00% REG::WarpX::Evolve() 1 2.14e-06 2.457e-06 2.77e-06 0.00% Other 437 0.001325 0.003144 0.004999 0.19% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.585 2.588 2.59 99.60% REG::WarpX::Evolve() 1 2.273 2.279 2.286 87.89% WarpX::Evolve() 1 2.273 2.279 2.286 87.89% WarpX::Evolve::step 3 2.148 2.155 2.162 83.12% WarpX::OneStep_nosub() 3 1.882 1.882 1.882 72.38% PML::Exchange 72 0.7784 0.8355 0.8958 34.45% FabArray::setVal() 177 0.3208 0.3304 0.3439 13.22% WarpX::MacroscopicEvolveE() 3 0.2864 0.313 0.3431 13.19% Diagnostics::FilterComputePackFlush() 5 0.2812 0.3103 0.3371 12.96% WarpX::InitData() 1 0.297 0.3065 0.3162 12.16% ablastr::utils::communication::ParallelCopy 144 0.1297 0.2032 0.28 10.77% FabArray::ParallelCopy() 144 0.1293 0.2028 0.2795 10.75% amrex::Copy() 144 0.2469 0.2527 0.2604 10.01% FabArray::ParallelCopy_finish() 144 0.03822 0.1123 0.1882 7.24% MultiFab::Copy() 72 0.1172 0.1234 0.1325 5.09% FabArray::LinComb() 72 0.07666 0.09746 0.1175 4.52% sample::Coarsen() 12 0.08963 0.09039 0.0913 3.51% FabArray::ParallelCopy_nowait() 144 0.08907 0.09012 0.0908 3.49% WarpX::EvolveB() 6 0.07834 0.08167 0.08522 3.28% FillBoundary_finish() 144 0.006445 0.04164 0.07436 2.86% ablastr::utils::communication::OverrideSync 18 0.0008916 0.03216 0.06041 2.32% FAbArray::OverrideSync() 18 0.0008758 0.03214 0.06038 2.32% OverrideSync_finish() 18 0.0001845 0.03148 0.05982 2.30% FlushFormatPlotfile::WriteToFile() 2 0.03756 0.04462 0.05256 2.02% WriteMultiLevelPlotfile() 2 0.03753 0.0444 0.05175 1.99% VisMF::Write(FabArray) 2 0.03613 0.04271 0.04957 1.91% ablastr::utils::communication::FillBoundary 144 0.03 0.03042 0.03092 1.19% FabArray::FillBoundary() 126 0.02677 0.02769 0.02855 1.10% FillBoundary_nowait() 144 0.01555 0.0204 0.02506 0.96% WarpX::DampPML() 3 0.00677 0.009815 0.01414 0.54% AmrMesh::MakeDistributionMap() 1 2.577e-05 0.00288 0.005732 0.22% DistributionMapping::SFCProcessorMapDoIt() 1 2.397e-05 0.002877 0.00573 0.22% DistributionMapping::LeastUsedCPUs() 1 1.599e-05 0.002871 0.005725 0.22% Other 437 0.006271 0.01398 0.02158 0.83% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9945 1.027 1.067 41.05% WarpX::MacroscopicEvolveE() 3 0.2864 0.313 0.3431 13.19% amrex::Copy() 132 0.227 0.2334 0.2405 9.25% FabArray::setVal() 132 0.227 0.23 0.232 8.92% FabArray::ParallelCopy_finish() 132 0.02824 0.07171 0.1253 4.82% FabArray::LinComb() 66 0.07024 0.0898 0.1085 4.17% WarpX::EvolveB() 6 0.07834 0.08167 0.08522 3.28% FabArray::ParallelCopy_nowait() 132 0.0814 0.08198 0.08271 3.18% FillBoundary_finish() 132 0.005824 0.04073 0.07312 2.81% sample::Coarsen() 6 0.03891 0.03926 0.03993 1.54% PML::Exchange 66 0.02009 0.02101 0.02279 0.88% FillBoundary_nowait() 132 0.01376 0.01831 0.02253 0.87% VisMF::Write(FabArray) 1 0.0175 0.0178 0.01811 0.70% WriteMultiLevelPlotfile() 1 1.553e-05 0.0006927 0.001206 0.05% ablastr::utils::communication::ParallelCopy 132 0.0003171 0.0003791 0.000485 0.02% FabArray::ParallelCopy() 132 0.000308 0.0003829 0.0004586 0.02% WarpX::Evolve::step 3 0.0001836 0.0002889 0.0004339 0.02% FabArray::FillBoundary() 114 0.0001304 0.0001808 0.0003022 0.01% FlushFormatPlotfile::WriteToFile() 1 1.333e-05 7.384e-05 0.0002508 0.01% ablastr::utils::communication::FillBoundary 132 0.0002127 0.0002274 0.0002491 0.01% MultiFab::Copy() 66 0.0001917 0.0002165 0.0002386 0.01% Diagnostics::FilterComputePackFlush() 4 5.283e-05 5.376e-05 5.442e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.575e-05 2.264e-05 2.858e-05 0.00% FAbArray::OverrideSync() 18 1.501e-05 1.975e-05 2.271e-05 0.00% OverrideSync_finish() 18 1.163e-05 1.232e-05 1.308e-05 0.00% WarpX::Evolve() 1 2.587e-06 2.857e-06 3.069e-06 0.00% REG::WarpX::Evolve() 1 2.14e-06 2.457e-06 2.77e-06 0.00% Other 371 0.007646 0.01086 0.01542 0.59% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.273 2.279 2.286 87.89% WarpX::Evolve() 1 2.273 2.279 2.286 87.89% WarpX::Evolve::step 3 2.148 2.155 2.162 83.12% WarpX::OneStep_nosub() 3 1.882 1.882 1.882 72.38% PML::Exchange 66 0.6942 0.7296 0.7714 29.66% WarpX::MacroscopicEvolveE() 3 0.2864 0.313 0.3431 13.19% amrex::Copy() 132 0.227 0.2334 0.2405 9.25% FabArray::setVal() 132 0.227 0.23 0.232 8.92% ablastr::utils::communication::ParallelCopy 132 0.1108 0.1551 0.2097 8.06% FabArray::ParallelCopy() 132 0.1105 0.1547 0.2092 8.04% FabArray::ParallelCopy_finish() 132 0.02824 0.07171 0.1253 4.82% Diagnostics::FilterComputePackFlush() 4 0.1242 0.1244 0.1248 4.80% MultiFab::Copy() 66 0.1088 0.115 0.1235 4.75% FabArray::LinComb() 66 0.07024 0.0898 0.1085 4.17% WarpX::EvolveB() 6 0.07834 0.08167 0.08522 3.28% FabArray::ParallelCopy_nowait() 132 0.08192 0.08262 0.08342 3.21% FillBoundary_finish() 132 0.005824 0.04073 0.07312 2.81% ablastr::utils::communication::OverrideSync 18 0.0008916 0.03216 0.06041 2.32% FAbArray::OverrideSync() 18 0.0008758 0.03214 0.06038 2.32% OverrideSync_finish() 18 0.0001845 0.03148 0.05982 2.30% sample::Coarsen() 6 0.03891 0.03926 0.03993 1.54% ablastr::utils::communication::FillBoundary 132 0.02725 0.0277 0.0282 1.08% FabArray::FillBoundary() 114 0.02405 0.02498 0.02588 1.00% FillBoundary_nowait() 132 0.01408 0.01861 0.02283 0.88% FlushFormatPlotfile::WriteToFile() 1 0.01797 0.0186 0.01914 0.74% WriteMultiLevelPlotfile() 1 0.01796 0.01852 0.01889 0.73% VisMF::Write(FabArray) 1 0.0175 0.0178 0.01811 0.70% Other 371 0.01212 0.01654 0.02245 0.86% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 6 B 6 B 8 B 8192 KiB 8192 KiB 8192 KiB main() 280 3305 B 3308 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2170 B 2171 B 2173 B 2560 B 2560 B 2560 B WarpX::InitData() 12 729 B 735 B 740 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 182 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3228 KiB 3358 KiB 3498 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3620 B 4523 B 5899 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3196 B 3459 B 3717 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-125-g523e7305089a) finalized