Initializing AMReX (26.09-125-g523e7305089a)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-125-g523e7305089a) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.858132576 s; This step = 0.858132576 s; Avg. per step = 0.858132576 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.462754801 s; This step = 0.604622225 s; Avg. per step = 0.7313774005 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.145649987 s; This step = 0.682895186 s; Avg. per step = 0.7152166623 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.537489251 TinyProfiler total time across processes [min...avg...max]: 2.54 ... 2.543 ... 2.546 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9953 1.027 1.071 42.06% WarpX::MacroscopicEvolveE() 3 0.2859 0.314 0.3421 13.43% FabArray::setVal() 177 0.3186 0.3293 0.3393 13.33% amrex::Copy() 144 0.2487 0.2549 0.2619 10.29% FabArray::ParallelCopy_finish() 144 0.02188 0.08083 0.147 5.77% FabArray::LinComb() 72 0.07448 0.09709 0.1183 4.65% FabArray::ParallelCopy_nowait() 144 0.08789 0.09025 0.0923 3.62% WarpX::EvolveB() 6 0.07774 0.08321 0.08927 3.51% sample::Coarsen() 12 0.08745 0.088 0.0885 3.48% FillBoundary_finish() 144 0.01322 0.03448 0.06469 2.54% WarpX::InitData() 1 0.03307 0.03595 0.03909 1.54% VisMF::Write(FabArray) 2 0.03351 0.03394 0.03461 1.36% PML::Exchange 72 0.02177 0.02291 0.02504 0.98% FillBoundary_nowait() 144 0.0149 0.01943 0.02404 0.94% WarpX::DampPML() 3 0.006834 0.01103 0.0161 0.63% DistributionMapping::LeastUsedCPUs() 1 1.709e-05 0.003145 0.006314 0.25% WriteMultiLevelPlotfile() 2 0.0008835 0.001674 0.002509 0.10% main() 1 0.001605 0.001793 0.002039 0.08% FlushFormatPlotfile::WriteToFile() 2 3.59e-05 0.000176 0.0005797 0.02% FabArray::ParallelCopy() 144 0.00039 0.0004336 0.000498 0.02% WarpX::Evolve::step 3 0.0001792 0.0003139 0.0004891 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003613 0.0004142 0.0004462 0.02% ablastr::utils::communication::FillBoundary 144 0.0002273 0.0002428 0.0002613 0.01% MultiFab::Copy() 72 0.0002119 0.0002244 0.0002376 0.01% FabArray::FillBoundary() 126 0.0001351 0.0001429 0.0001539 0.01% Diagnostics::FilterComputePackFlush() 5 9.323e-05 0.0001016 0.0001156 0.00% ablastr::utils::communication::OverrideSync 18 1.309e-05 2.222e-05 2.595e-05 0.00% FAbArray::OverrideSync() 18 1.482e-05 1.991e-05 2.446e-05 0.00% OverrideSync_finish() 18 7.969e-06 1.082e-05 1.225e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 2.76e-06 5.537e-06 8.473e-06 0.00% AmrMesh::MakeDistributionMap() 1 1.256e-06 4.019e-06 6.172e-06 0.00% WarpX::Evolve() 1 2.249e-06 2.955e-06 3.299e-06 0.00% REG::WarpX::Evolve() 1 2.032e-06 2.45e-06 2.992e-06 0.00% Other 437 0.001382 0.003411 0.005521 0.22% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.532 2.535 2.538 99.65% REG::WarpX::Evolve() 1 2.269 2.269 2.269 89.10% WarpX::Evolve() 1 2.269 2.269 2.269 89.10% WarpX::Evolve::step 3 2.146 2.146 2.147 84.29% WarpX::OneStep_nosub() 3 1.879 1.879 1.88 73.82% PML::Exchange 72 0.7623 0.806 0.8547 33.57% WarpX::MacroscopicEvolveE() 3 0.2859 0.314 0.3421 13.43% FabArray::setVal() 177 0.3186 0.3293 0.3393 13.33% Diagnostics::FilterComputePackFlush() 5 0.2633 0.2742 0.2852 11.20% WarpX::InitData() 1 0.2607 0.2641 0.267 10.49% amrex::Copy() 144 0.2487 0.2549 0.2619 10.29% ablastr::utils::communication::ParallelCopy 144 0.1158 0.1728 0.2367 9.30% FabArray::ParallelCopy() 144 0.1154 0.1724 0.2363 9.28% FabArray::ParallelCopy_finish() 144 0.02188 0.08083 0.147 5.77% MultiFab::Copy() 72 0.121 0.1267 0.1329 5.22% FabArray::LinComb() 72 0.07448 0.09709 0.1183 4.65% FabArray::ParallelCopy_nowait() 144 0.08879 0.09114 0.09313 3.66% WarpX::EvolveB() 6 0.07774 0.08321 0.08927 3.51% sample::Coarsen() 12 0.08745 0.088 0.0885 3.48% FillBoundary_finish() 144 0.01322 0.03448 0.06469 2.54% ablastr::utils::communication::OverrideSync 18 0.0007321 0.02561 0.05166 2.03% FAbArray::OverrideSync() 18 0.000719 0.02559 0.05164 2.03% OverrideSync_finish() 18 0.0002759 0.02496 0.05104 2.00% FlushFormatPlotfile::WriteToFile() 2 0.03517 0.03584 0.0363 1.43% WriteMultiLevelPlotfile() 2 0.03513 0.03567 0.03602 1.41% VisMF::Write(FabArray) 2 0.03351 0.03394 0.03461 1.36% ablastr::utils::communication::FillBoundary 144 0.02874 0.02926 0.02981 1.17% FabArray::FillBoundary() 126 0.02573 0.02667 0.02766 1.09% FillBoundary_nowait() 144 0.01536 0.01989 0.02452 0.96% WarpX::DampPML() 3 0.006834 0.01103 0.0161 0.63% AmrMesh::MakeDistributionMap() 1 2.198e-05 0.003156 0.006326 0.25% DistributionMapping::SFCProcessorMapDoIt() 1 2.072e-05 0.003152 0.006324 0.25% DistributionMapping::LeastUsedCPUs() 1 1.709e-05 0.003145 0.006314 0.25% Other 437 0.006156 0.01461 0.02296 0.90% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9953 1.027 1.071 42.06% WarpX::MacroscopicEvolveE() 3 0.2859 0.314 0.3421 13.43% amrex::Copy() 132 0.2285 0.2351 0.2415 9.48% FabArray::setVal() 132 0.2279 0.2312 0.233 9.15% FabArray::ParallelCopy_finish() 132 0.01509 0.06464 0.1178 4.63% FabArray::LinComb() 66 0.06828 0.08942 0.109 4.28% WarpX::EvolveB() 6 0.07774 0.08321 0.08927 3.51% FabArray::ParallelCopy_nowait() 132 0.0806 0.08275 0.0847 3.33% FillBoundary_finish() 132 0.01198 0.03361 0.06345 2.49% sample::Coarsen() 6 0.03748 0.03772 0.03841 1.51% FillBoundary_nowait() 132 0.01369 0.01786 0.02213 0.87% PML::Exchange 66 0.01941 0.02017 0.02192 0.86% VisMF::Write(FabArray) 1 0.01706 0.01726 0.01753 0.69% WriteMultiLevelPlotfile() 1 6.297e-05 0.0007666 0.001167 0.05% WarpX::Evolve::step 3 0.0001792 0.0003139 0.0004891 0.02% FabArray::ParallelCopy() 132 0.0003664 0.0004062 0.0004592 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003411 0.0003885 0.0004216 0.02% FlushFormatPlotfile::WriteToFile() 1 1.222e-05 7.126e-05 0.0002456 0.01% ablastr::utils::communication::FillBoundary 132 0.0002103 0.0002247 0.0002422 0.01% MultiFab::Copy() 66 0.0001996 0.0002114 0.0002246 0.01% FabArray::FillBoundary() 114 0.0001255 0.0001331 0.0001442 0.01% Diagnostics::FilterComputePackFlush() 4 5.178e-05 5.505e-05 5.752e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.309e-05 2.222e-05 2.595e-05 0.00% FAbArray::OverrideSync() 18 1.482e-05 1.991e-05 2.446e-05 0.00% OverrideSync_finish() 18 7.969e-06 1.082e-05 1.225e-05 0.00% WarpX::Evolve() 1 2.249e-06 2.955e-06 3.299e-06 0.00% REG::WarpX::Evolve() 1 2.032e-06 2.45e-06 2.992e-06 0.00% Other 371 0.007776 0.01212 0.01746 0.69% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.269 2.269 2.269 89.10% WarpX::Evolve() 1 2.269 2.269 2.269 89.10% WarpX::Evolve::step 3 2.146 2.146 2.147 84.29% WarpX::OneStep_nosub() 3 1.879 1.879 1.88 73.82% PML::Exchange 66 0.6907 0.7249 0.7635 29.98% WarpX::MacroscopicEvolveE() 3 0.2859 0.314 0.3421 13.43% amrex::Copy() 132 0.2285 0.2351 0.2415 9.48% FabArray::setVal() 132 0.2279 0.2312 0.233 9.15% ablastr::utils::communication::ParallelCopy 132 0.1012 0.1489 0.1999 7.85% FabArray::ParallelCopy() 132 0.1008 0.1485 0.1995 7.84% MultiFab::Copy() 66 0.1128 0.1178 0.1234 4.85% Diagnostics::FilterComputePackFlush() 4 0.1222 0.1225 0.1228 4.82% FabArray::ParallelCopy_finish() 132 0.01509 0.06464 0.1178 4.63% FabArray::LinComb() 66 0.06828 0.08942 0.109 4.28% WarpX::EvolveB() 6 0.07774 0.08321 0.08927 3.51% FabArray::ParallelCopy_nowait() 132 0.08126 0.08343 0.08534 3.35% FillBoundary_finish() 132 0.01198 0.03361 0.06345 2.49% ablastr::utils::communication::OverrideSync 18 0.0007321 0.02561 0.05166 2.03% FAbArray::OverrideSync() 18 0.000719 0.02559 0.05164 2.03% OverrideSync_finish() 18 0.0002759 0.02496 0.05104 2.00% sample::Coarsen() 6 0.03748 0.03772 0.03841 1.51% ablastr::utils::communication::FillBoundary 132 0.02612 0.02663 0.02717 1.07% FabArray::FillBoundary() 114 0.02313 0.02407 0.02503 0.98% FillBoundary_nowait() 132 0.01401 0.01816 0.02243 0.88% FlushFormatPlotfile::WriteToFile() 1 0.01744 0.01813 0.01875 0.74% WriteMultiLevelPlotfile() 1 0.01743 0.01806 0.0185 0.73% VisMF::Write(FabArray) 1 0.01706 0.01726 0.01753 0.69% Other 371 0.01207 0.01747 0.02401 0.94% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 6 B 7 B 10 B 8192 KiB 8192 KiB 8192 KiB main() 280 3301 B 3306 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2211 B 2212 B 2214 B 2560 B 2560 B 2560 B WarpX::InitData() 12 734 B 736 B 739 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 182 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3229 KiB 3304 KiB 3401 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3076 B 4386 B 5592 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3098 B 3291 B 3495 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-125-g523e7305089a) finalized