Initializing AMReX (26.09-173-ga0da80d18121)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-173-ga0da80d18121) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.862612463 s; This step = 0.862612463 s; Avg. per step = 0.862612463 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.470969708 s; This step = 0.608357245 s; Avg. per step = 0.735484854 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.145980531 s; This step = 0.675010823 s; Avg. per step = 0.7153268437 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.547225356 TinyProfiler total time across processes [min...avg...max]: 2.55 ... 2.554 ... 2.557 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1 1.026 1.059 41.44% FabArray::setVal() 177 0.3183 0.3329 0.3467 13.56% WarpX::MacroscopicEvolveE() 3 0.2868 0.3127 0.3422 13.39% amrex::Copy() 144 0.2508 0.2557 0.2621 10.25% FabArray::ParallelCopy_finish() 144 0.01271 0.07605 0.1304 5.10% FabArray::LinComb() 72 0.07896 0.09871 0.1191 4.66% FabArray::ParallelCopy_nowait() 144 0.0889 0.08944 0.08972 3.51% sample::Coarsen() 12 0.08761 0.0881 0.08907 3.48% WarpX::EvolveB() 6 0.08039 0.0849 0.08876 3.47% FillBoundary_finish() 144 0.005932 0.03602 0.05612 2.20% WarpX::InitData() 1 0.03278 0.03643 0.0395 1.54% VisMF::Write(FabArray) 2 0.03402 0.03469 0.03542 1.39% FillBoundary_nowait() 144 0.01494 0.01966 0.02573 1.01% PML::Exchange 72 0.02217 0.02312 0.02529 0.99% WarpX::DampPML() 3 0.008091 0.01353 0.02028 0.79% ParticleCopyPlan::doHandShake 1 2.08e-05 0.007283 0.01456 0.57% main() 1 0.001093 0.001715 0.002117 0.08% WriteMultiLevelPlotfile() 2 3.289e-05 0.001043 0.00194 0.08% FlushFormatPlotfile::WriteToFile() 2 3.258e-05 0.0002163 0.0007352 0.03% ablastr::utils::communication::ParallelCopy 144 0.0004203 0.0004645 0.0005325 0.02% FabArray::ParallelCopy() 144 0.0003034 0.0004159 0.000508 0.02% WarpX::Evolve::step 3 0.0001881 0.0003275 0.0004211 0.02% ablastr::utils::communication::FillBoundary 144 0.0002364 0.0002568 0.0002783 0.01% MultiFab::Copy() 72 0.0002038 0.0002333 0.0002668 0.01% FabArray::FillBoundary() 126 0.0001284 0.0001439 0.0001554 0.01% Diagnostics::FilterComputePackFlush() 5 9.655e-05 0.0001112 0.0001359 0.01% ablastr::utils::communication::OverrideSync 18 1.349e-05 2.299e-05 3.139e-05 0.00% FAbArray::OverrideSync() 18 1.379e-05 2.068e-05 2.581e-05 0.00% OverrideSync_finish() 18 1.018e-05 1.255e-05 1.692e-05 0.00% ParticleCopyPlan::buildMPIStart 1 6.991e-06 9.879e-06 1.412e-05 0.00% ParticleCopyPlan::build 1 7.051e-06 7.57e-06 8.683e-06 0.00% ParticleContainer::Redistribute_impl() 1 5.079e-06 6.363e-06 8.271e-06 0.00% AmrMesh::MakeDistributionMap() 1 1.672e-06 4.214e-06 7.377e-06 0.00% WarpX::Evolve() 1 2.441e-06 3.097e-06 4.166e-06 0.00% REG::WarpX::Evolve() 1 1.746e-06 2.875e-06 3.323e-06 0.00% Other 435 0.001273 0.004422 0.007794 0.30% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.542 2.545 2.547 99.63% REG::WarpX::Evolve() 1 2.27 2.271 2.271 88.81% WarpX::Evolve() 1 2.27 2.27 2.271 88.81% WarpX::Evolve::step 3 2.146 2.147 2.147 83.98% WarpX::OneStep_nosub() 3 1.879 1.879 1.88 73.53% PML::Exchange 72 0.7542 0.8036 0.8467 33.12% FabArray::setVal() 177 0.3183 0.3329 0.3467 13.56% WarpX::MacroscopicEvolveE() 3 0.2868 0.3127 0.3422 13.39% Diagnostics::FilterComputePackFlush() 5 0.2644 0.2751 0.2869 11.22% WarpX::InitData() 1 0.2691 0.2723 0.2758 10.79% amrex::Copy() 144 0.2508 0.2557 0.2621 10.25% ablastr::utils::communication::ParallelCopy 144 0.1038 0.1672 0.2221 8.69% FabArray::ParallelCopy() 144 0.1033 0.1668 0.2217 8.67% MultiFab::Copy() 72 0.1216 0.1271 0.1333 5.21% FabArray::ParallelCopy_finish() 144 0.01271 0.07605 0.1304 5.10% FabArray::LinComb() 72 0.07896 0.09871 0.1191 4.66% FabArray::ParallelCopy_nowait() 144 0.08987 0.0903 0.09071 3.55% sample::Coarsen() 12 0.08761 0.0881 0.08907 3.48% WarpX::EvolveB() 6 0.08039 0.0849 0.08876 3.47% FillBoundary_finish() 144 0.005932 0.03602 0.05612 2.20% ablastr::utils::communication::OverrideSync 18 0.0009514 0.02546 0.04123 1.61% FAbArray::OverrideSync() 18 0.0009379 0.02544 0.0412 1.61% OverrideSync_finish() 18 0.0002765 0.02478 0.04059 1.59% FlushFormatPlotfile::WriteToFile() 2 0.03498 0.03602 0.03737 1.46% WriteMultiLevelPlotfile() 2 0.03495 0.0358 0.03663 1.43% VisMF::Write(FabArray) 2 0.03402 0.03469 0.03542 1.39% ablastr::utils::communication::FillBoundary 144 0.03086 0.03119 0.03167 1.24% FabArray::FillBoundary() 126 0.0276 0.02842 0.02948 1.15% FillBoundary_nowait() 144 0.01542 0.02013 0.02621 1.03% WarpX::DampPML() 3 0.008091 0.01353 0.02028 0.79% ParticleContainer::Redistribute_impl() 1 0.0001192 0.007395 0.01469 0.57% ParticleCopyPlan::build 1 3.583e-05 0.007301 0.01458 0.57% ParticleCopyPlan::buildMPIStart 1 2.791e-05 0.007293 0.01457 0.57% ParticleCopyPlan::doHandShake 1 2.08e-05 0.007283 0.01456 0.57% AmrMesh::MakeDistributionMap() 1 2.51e-05 0.002858 0.00577 0.23% Other 435 0.005995 0.01333 0.02104 0.82% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1 1.026 1.059 41.44% WarpX::MacroscopicEvolveE() 3 0.2868 0.3127 0.3422 13.39% amrex::Copy() 132 0.2302 0.236 0.243 9.51% FabArray::setVal() 132 0.2284 0.2314 0.233 9.11% FabArray::LinComb() 66 0.07261 0.09106 0.1096 4.29% FabArray::ParallelCopy_finish() 132 0.006982 0.05987 0.1046 4.09% WarpX::EvolveB() 6 0.08039 0.0849 0.08876 3.47% FabArray::ParallelCopy_nowait() 132 0.08145 0.08205 0.08268 3.23% FillBoundary_finish() 132 0.005527 0.03499 0.05469 2.14% sample::Coarsen() 6 0.03848 0.03869 0.03912 1.53% FillBoundary_nowait() 132 0.01377 0.01812 0.02368 0.93% PML::Exchange 66 0.01935 0.02019 0.02224 0.87% WarpX::DampPML() 3 0.008091 0.01353 0.02028 0.79% VisMF::Write(FabArray) 1 0.01747 0.01773 0.018 0.70% WriteMultiLevelPlotfile() 1 1.455e-05 0.0004557 0.0008314 0.03% ablastr::utils::communication::ParallelCopy 132 0.0003948 0.0004378 0.0005098 0.02% FabArray::ParallelCopy() 132 0.0002806 0.0003843 0.00047 0.02% WarpX::Evolve::step 3 0.0001881 0.0003275 0.0004211 0.02% ablastr::utils::communication::FillBoundary 132 0.0002203 0.0002362 0.0002567 0.01% MultiFab::Copy() 66 0.0001908 0.0002204 0.000254 0.01% FlushFormatPlotfile::WriteToFile() 1 1.22e-05 7.334e-05 0.0002491 0.01% FabArray::FillBoundary() 114 0.0001189 0.0001335 0.0001436 0.01% Diagnostics::FilterComputePackFlush() 4 5.004e-05 5.914e-05 7.459e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.349e-05 2.299e-05 3.139e-05 0.00% FAbArray::OverrideSync() 18 1.379e-05 2.068e-05 2.581e-05 0.00% OverrideSync_finish() 18 1.018e-05 1.255e-05 1.692e-05 0.00% WarpX::Evolve() 1 2.441e-06 3.097e-06 4.166e-06 0.00% REG::WarpX::Evolve() 1 1.746e-06 2.875e-06 3.323e-06 0.00% Other 368 0.0008665 0.001072 0.001374 0.05% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.27 2.271 2.271 88.81% WarpX::Evolve() 1 2.27 2.27 2.271 88.81% WarpX::Evolve::step 3 2.146 2.147 2.147 83.98% WarpX::OneStep_nosub() 3 1.879 1.879 1.88 73.53% PML::Exchange 66 0.6826 0.7222 0.7558 29.56% WarpX::MacroscopicEvolveE() 3 0.2868 0.3127 0.3422 13.39% amrex::Copy() 132 0.2302 0.236 0.243 9.51% FabArray::setVal() 132 0.2284 0.2314 0.233 9.11% ablastr::utils::communication::ParallelCopy 132 0.09035 0.1434 0.1889 7.39% FabArray::ParallelCopy() 132 0.08984 0.1429 0.1885 7.37% MultiFab::Copy() 66 0.1121 0.1182 0.125 4.89% Diagnostics::FilterComputePackFlush() 4 0.1236 0.1238 0.1241 4.86% FabArray::LinComb() 66 0.07261 0.09106 0.1096 4.29% FabArray::ParallelCopy_finish() 132 0.006982 0.05987 0.1046 4.09% WarpX::EvolveB() 6 0.08039 0.0849 0.08876 3.47% FabArray::ParallelCopy_nowait() 132 0.08218 0.08269 0.08343 3.26% FillBoundary_finish() 132 0.005527 0.03499 0.05469 2.14% ablastr::utils::communication::OverrideSync 18 0.0009514 0.02546 0.04123 1.61% FAbArray::OverrideSync() 18 0.0009379 0.02544 0.0412 1.61% OverrideSync_finish() 18 0.0002765 0.02478 0.04059 1.59% sample::Coarsen() 6 0.03848 0.03869 0.03912 1.53% ablastr::utils::communication::FillBoundary 132 0.02809 0.02844 0.02899 1.13% FabArray::FillBoundary() 114 0.02486 0.02569 0.02682 1.05% FillBoundary_nowait() 132 0.01412 0.01843 0.02396 0.94% WarpX::DampPML() 3 0.008091 0.01353 0.02028 0.79% FlushFormatPlotfile::WriteToFile() 1 0.01785 0.01829 0.01884 0.74% WriteMultiLevelPlotfile() 1 0.01784 0.01822 0.01859 0.73% VisMF::Write(FabArray) 1 0.01747 0.01773 0.018 0.70% Other 368 0.00529 0.006803 0.008502 0.33% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 7 B 7 B 9 B 8192 KiB 8192 KiB 8192 KiB main() 280 3304 B 3307 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2203 B 2205 B 2207 B 2560 B 2560 B 2560 B WarpX::InitData() 12 732 B 734 B 737 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 181 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3178 KiB 3280 KiB 3353 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3869 B 4475 B 5663 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 2987 B 3207 B 3446 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-173-ga0da80d18121) finalized