Initializing AMReX (26.09-175-gf2e8bf0a946a)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-175-gf2e8bf0a946a) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.876287571 s; This step = 0.876287571 s; Avg. per step = 0.876287571 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.492960037 s; This step = 0.616672466 s; Avg. per step = 0.7464800185 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.176837875 s; This step = 0.683877838 s; Avg. per step = 0.725612625 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.566358238 TinyProfiler total time across processes [min...avg...max]: 2.571 ... 2.574 ... 2.577 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.02 1.054 1.093 42.40% WarpX::MacroscopicEvolveE() 3 0.2872 0.3137 0.3441 13.35% FabArray::setVal() 177 0.3191 0.3283 0.3387 13.14% amrex::Copy() 144 0.2459 0.2523 0.2623 10.18% FabArray::ParallelCopy_finish() 144 0.01407 0.08443 0.1407 5.46% FabArray::LinComb() 72 0.07629 0.09731 0.1203 4.67% FabArray::ParallelCopy_nowait() 144 0.09048 0.0913 0.09254 3.59% WarpX::EvolveB() 6 0.0786 0.08232 0.0862 3.34% sample::Coarsen() 12 0.08168 0.08226 0.08351 3.24% FillBoundary_finish() 144 0.005315 0.0399 0.06719 2.61% WarpX::InitData() 1 0.03257 0.03612 0.04 1.55% VisMF::Write(FabArray) 2 0.03427 0.03515 0.03601 1.40% PML::Exchange 72 0.0228 0.02404 0.0266 1.03% FillBoundary_nowait() 144 0.015 0.01981 0.02497 0.97% WarpX::DampPML() 3 0.006564 0.009871 0.01336 0.52% ParticleCopyPlan::doHandShake 1 2.3e-05 0.00284 0.00666 0.26% WriteMultiLevelPlotfile() 2 2.911e-05 0.001326 0.002313 0.09% main() 1 0.001152 0.001798 0.002227 0.09% FlushFormatPlotfile::WriteToFile() 2 3.361e-05 0.0002167 0.0007537 0.03% FabArray::ParallelCopy() 144 0.0003425 0.0004591 0.0005715 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003625 0.0004312 0.0005247 0.02% WarpX::Evolve::step 3 0.0001821 0.0003071 0.0004456 0.02% MultiFab::Copy() 72 0.0002015 0.0002379 0.0002765 0.01% ablastr::utils::communication::FillBoundary 144 0.0002272 0.0002467 0.000276 0.01% FabArray::FillBoundary() 126 0.0001312 0.0001388 0.0001451 0.01% Diagnostics::FilterComputePackFlush() 5 9.808e-05 0.000106 0.0001094 0.00% ablastr::utils::communication::OverrideSync 18 1.527e-05 2.351e-05 3.151e-05 0.00% FAbArray::OverrideSync() 18 1.462e-05 1.944e-05 2.218e-05 0.00% OverrideSync_finish() 18 9.634e-06 1.174e-05 1.537e-05 0.00% ParticleCopyPlan::build 1 6.536e-06 8.272e-06 1.022e-05 0.00% ParticleCopyPlan::buildMPIStart 1 6.661e-06 8.61e-06 1.021e-05 0.00% ParticleContainer::Redistribute_impl() 1 5.34e-06 7.426e-06 1.011e-05 0.00% AmrMesh::MakeDistributionMap() 1 1.97e-06 4.867e-06 6.283e-06 0.00% REG::WarpX::Evolve() 1 2.171e-06 2.655e-06 3.241e-06 0.00% WarpX::Evolve() 1 2.834e-06 3.005e-06 3.163e-06 0.00% Other 435 0.001219 0.004546 0.008059 0.31% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.561 2.564 2.566 99.59% REG::WarpX::Evolve() 1 2.298 2.299 2.299 89.21% WarpX::Evolve() 1 2.298 2.299 2.299 89.21% WarpX::Evolve::step 3 2.177 2.178 2.178 84.52% WarpX::OneStep_nosub() 3 1.909 1.91 1.91 74.12% PML::Exchange 72 0.7563 0.8097 0.8557 33.21% WarpX::MacroscopicEvolveE() 3 0.2872 0.3137 0.3441 13.35% FabArray::setVal() 177 0.3191 0.3283 0.3387 13.14% Diagnostics::FilterComputePackFlush() 5 0.2607 0.272 0.2832 10.99% WarpX::InitData() 1 0.2597 0.263 0.2668 10.36% amrex::Copy() 144 0.2459 0.2523 0.2623 10.18% ablastr::utils::communication::ParallelCopy 144 0.108 0.1775 0.2334 9.06% FabArray::ParallelCopy() 144 0.1077 0.177 0.2329 9.04% FabArray::ParallelCopy_finish() 144 0.01407 0.08443 0.1407 5.46% MultiFab::Copy() 72 0.1182 0.1254 0.1339 5.20% FabArray::LinComb() 72 0.07629 0.09731 0.1203 4.67% FabArray::ParallelCopy_nowait() 144 0.0915 0.09214 0.09327 3.62% WarpX::EvolveB() 6 0.0786 0.08232 0.0862 3.34% sample::Coarsen() 12 0.08168 0.08226 0.08351 3.24% FillBoundary_finish() 144 0.005315 0.0399 0.06719 2.61% ablastr::utils::communication::OverrideSync 18 0.0009148 0.03077 0.05384 2.09% FAbArray::OverrideSync() 18 0.0008995 0.03074 0.0538 2.09% OverrideSync_finish() 18 0.0001897 0.0301 0.05324 2.07% FlushFormatPlotfile::WriteToFile() 2 0.03553 0.03676 0.03849 1.49% WriteMultiLevelPlotfile() 2 0.03549 0.03654 0.03773 1.46% VisMF::Write(FabArray) 2 0.03427 0.03515 0.03601 1.40% ablastr::utils::communication::FillBoundary 144 0.0293 0.02987 0.0304 1.18% FabArray::FillBoundary() 126 0.02603 0.02712 0.02809 1.09% FillBoundary_nowait() 144 0.01544 0.02024 0.02541 0.99% WarpX::DampPML() 3 0.006564 0.009871 0.01336 0.52% ParticleContainer::Redistribute_impl() 1 0.0001206 0.002949 0.006772 0.26% ParticleCopyPlan::build 1 3.702e-05 0.002858 0.006679 0.26% ParticleCopyPlan::buildMPIStart 1 2.966e-05 0.002849 0.006669 0.26% ParticleCopyPlan::doHandShake 1 2.3e-05 0.00284 0.00666 0.26% AmrMesh::MakeDistributionMap() 1 2.143e-05 0.00303 0.006046 0.23% Other 435 0.006 0.01358 0.02146 0.83% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.02 1.054 1.093 42.40% WarpX::MacroscopicEvolveE() 3 0.2872 0.3137 0.3441 13.35% amrex::Copy() 132 0.2265 0.2335 0.2432 9.44% FabArray::setVal() 132 0.2291 0.2307 0.234 9.08% FabArray::ParallelCopy_finish() 132 0.006146 0.06566 0.1112 4.32% FabArray::LinComb() 66 0.07089 0.09012 0.111 4.31% WarpX::EvolveB() 6 0.0786 0.08232 0.0862 3.34% FabArray::ParallelCopy_nowait() 132 0.08299 0.0836 0.08464 3.28% FillBoundary_finish() 132 0.00483 0.039 0.06587 2.56% sample::Coarsen() 6 0.03527 0.03547 0.03598 1.40% PML::Exchange 66 0.01989 0.0212 0.02361 0.92% FillBoundary_nowait() 132 0.01377 0.01818 0.02295 0.89% VisMF::Write(FabArray) 1 0.01768 0.01799 0.01829 0.71% WriteMultiLevelPlotfile() 1 1.213e-05 0.0005267 0.0008759 0.03% FabArray::ParallelCopy() 132 0.0003197 0.0004302 0.0005317 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003405 0.0004069 0.0004966 0.02% WarpX::Evolve::step 3 0.0001821 0.0003071 0.0004456 0.02% MultiFab::Copy() 66 0.0001879 0.0002245 0.0002611 0.01% ablastr::utils::communication::FillBoundary 132 0.0002103 0.0002276 0.0002535 0.01% FlushFormatPlotfile::WriteToFile() 1 1.247e-05 7.313e-05 0.0002506 0.01% FabArray::FillBoundary() 114 0.0001217 0.0001292 0.0001357 0.01% Diagnostics::FilterComputePackFlush() 4 4.894e-05 5.133e-05 5.263e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.527e-05 2.351e-05 3.151e-05 0.00% FAbArray::OverrideSync() 18 1.462e-05 1.944e-05 2.218e-05 0.00% OverrideSync_finish() 18 9.634e-06 1.174e-05 1.537e-05 0.00% REG::WarpX::Evolve() 1 2.171e-06 2.655e-06 3.241e-06 0.00% WarpX::Evolve() 1 2.834e-06 3.005e-06 3.163e-06 0.00% Other 371 0.007358 0.0109 0.01471 0.57% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.298 2.299 2.299 89.21% WarpX::Evolve() 1 2.298 2.299 2.299 89.21% WarpX::Evolve::step 3 2.177 2.178 2.178 84.52% WarpX::OneStep_nosub() 3 1.909 1.91 1.91 74.12% PML::Exchange 66 0.6843 0.7264 0.7619 29.56% WarpX::MacroscopicEvolveE() 3 0.2872 0.3137 0.3441 13.35% amrex::Copy() 132 0.2265 0.2335 0.2432 9.44% FabArray::setVal() 132 0.2291 0.2307 0.234 9.08% ablastr::utils::communication::ParallelCopy 132 0.09195 0.1507 0.1961 7.61% FabArray::ParallelCopy() 132 0.09161 0.1503 0.1956 7.59% MultiFab::Copy() 66 0.1096 0.1173 0.1259 4.88% Diagnostics::FilterComputePackFlush() 4 0.1208 0.121 0.1214 4.71% FabArray::ParallelCopy_finish() 132 0.006146 0.06566 0.1112 4.32% FabArray::LinComb() 66 0.07089 0.09012 0.111 4.31% WarpX::EvolveB() 6 0.0786 0.08232 0.0862 3.34% FabArray::ParallelCopy_nowait() 132 0.08379 0.08422 0.08514 3.30% FillBoundary_finish() 132 0.00483 0.039 0.06587 2.56% ablastr::utils::communication::OverrideSync 18 0.0009148 0.03077 0.05384 2.09% FAbArray::OverrideSync() 18 0.0008995 0.03074 0.0538 2.09% OverrideSync_finish() 18 0.0001897 0.0301 0.05324 2.07% sample::Coarsen() 6 0.03527 0.03547 0.03598 1.40% ablastr::utils::communication::FillBoundary 132 0.02659 0.02717 0.0277 1.07% FabArray::FillBoundary() 114 0.02335 0.02444 0.02541 0.99% FillBoundary_nowait() 132 0.01409 0.01847 0.02323 0.90% FlushFormatPlotfile::WriteToFile() 1 0.01816 0.01862 0.01925 0.75% WriteMultiLevelPlotfile() 1 0.01814 0.01855 0.019 0.74% VisMF::Write(FabArray) 1 0.01768 0.01799 0.01829 0.71% Other 371 0.01182 0.01659 0.02175 0.84% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 4 B 7 B 10 B 8192 KiB 8192 KiB 8192 KiB main() 280 3304 B 3307 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2215 B 2217 B 2219 B 2560 B 2560 B 2560 B WarpX::InitData() 12 734 B 737 B 740 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 167 MiB 182 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3164 KiB 3281 KiB 3365 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3580 B 4482 B 5972 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3093 B 3310 B 3569 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-175-gf2e8bf0a946a) finalized