Initializing AMReX (26.09-180-g763b7185b24b)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-180-g763b7185b24b) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.856450656 s; This step = 0.856450656 s; Avg. per step = 0.856450656 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.461400046 s; This step = 0.60494939 s; Avg. per step = 0.730700023 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.141272448 s; This step = 0.679872402 s; Avg. per step = 0.7137574827 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.532353846 TinyProfiler total time across processes [min...avg...max]: 2.536 ... 2.539 ... 2.542 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9873 1.023 1.047 41.19% FabArray::setVal() 177 0.319 0.3323 0.344 13.53% WarpX::MacroscopicEvolveE() 3 0.2876 0.3142 0.3438 13.52% amrex::Copy() 144 0.2489 0.2535 0.2588 10.18% FabArray::ParallelCopy_finish() 144 0.02313 0.08206 0.1461 5.75% FabArray::LinComb() 72 0.07613 0.09656 0.1182 4.65% FabArray::ParallelCopy_nowait() 144 0.08666 0.08905 0.09219 3.63% WarpX::EvolveB() 6 0.07481 0.08331 0.08896 3.50% sample::Coarsen() 12 0.08246 0.083 0.08351 3.28% FillBoundary_finish() 144 0.01781 0.037 0.07262 2.86% WarpX::InitData() 1 0.02982 0.033 0.03617 1.42% VisMF::Write(FabArray) 2 0.03423 0.0346 0.03541 1.39% PML::Exchange 72 0.02183 0.02349 0.02623 1.03% FillBoundary_nowait() 144 0.01539 0.02016 0.02531 1.00% WarpX::DampPML() 3 0.006769 0.0101 0.01207 0.47% ParticleCopyPlan::doHandShake 1 2.147e-05 0.004407 0.009441 0.37% main() 1 0.001669 0.001939 0.002085 0.08% WriteMultiLevelPlotfile() 2 0.0007141 0.001258 0.001459 0.06% FlushFormatPlotfile::WriteToFile() 2 3.46e-05 0.0002093 0.0007253 0.03% WarpX::Evolve::step 3 0.0001567 0.0003425 0.0005176 0.02% FabArray::ParallelCopy() 144 0.0003305 0.0004199 0.0005155 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003374 0.00041 0.0004563 0.02% ablastr::utils::communication::FillBoundary 144 0.0002401 0.0002986 0.0004519 0.02% MultiFab::Copy() 72 0.0002133 0.0002286 0.0002479 0.01% FabArray::FillBoundary() 126 0.0001278 0.0001415 0.0001586 0.01% Diagnostics::FilterComputePackFlush() 5 9.183e-05 9.816e-05 0.0001095 0.00% ablastr::utils::communication::OverrideSync 18 1.647e-05 2.212e-05 3.136e-05 0.00% FAbArray::OverrideSync() 18 1.401e-05 1.869e-05 2.177e-05 0.00% ParticleCopyPlan::build 1 3.383e-06 9.861e-06 1.97e-05 0.00% ParticleContainer::Redistribute_impl() 1 5.075e-06 8.898e-06 1.514e-05 0.00% OverrideSync_finish() 18 9.378e-06 1.145e-05 1.285e-05 0.00% ParticleCopyPlan::buildMPIStart 1 6.509e-06 8.992e-06 1.243e-05 0.00% WarpX::Evolve() 1 2.592e-06 2.89e-06 3.416e-06 0.00% REG::WarpX::Evolve() 1 1.739e-06 2.195e-06 2.808e-06 0.00% AmrMesh::MakeDistributionMap() 1 1.941e-06 2.088e-06 2.242e-06 0.00% Other 435 0.00127 0.004589 0.008123 0.32% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.527 2.53 2.532 99.60% REG::WarpX::Evolve() 1 2.263 2.263 2.264 89.04% WarpX::Evolve() 1 2.263 2.263 2.264 89.04% WarpX::Evolve::step 3 2.141 2.142 2.142 84.26% WarpX::OneStep_nosub() 3 1.875 1.875 1.875 73.76% PML::Exchange 72 0.7607 0.8059 0.8553 33.64% FabArray::setVal() 177 0.319 0.3323 0.344 13.53% WarpX::MacroscopicEvolveE() 3 0.2876 0.3142 0.3438 13.52% Diagnostics::FilterComputePackFlush() 5 0.2606 0.2721 0.2839 11.17% WarpX::InitData() 1 0.2609 0.2642 0.2672 10.51% amrex::Copy() 144 0.2489 0.2535 0.2588 10.18% ablastr::utils::communication::ParallelCopy 144 0.1128 0.1728 0.2345 9.22% FabArray::ParallelCopy() 144 0.1125 0.1724 0.2341 9.21% FabArray::ParallelCopy_finish() 144 0.02313 0.08206 0.1461 5.75% MultiFab::Copy() 72 0.1197 0.1256 0.1316 5.17% FabArray::LinComb() 72 0.07613 0.09656 0.1182 4.65% FabArray::ParallelCopy_nowait() 144 0.08752 0.08988 0.09322 3.67% WarpX::EvolveB() 6 0.07481 0.08331 0.08896 3.50% sample::Coarsen() 12 0.08246 0.083 0.08351 3.28% FillBoundary_finish() 144 0.01781 0.037 0.07262 2.86% ablastr::utils::communication::OverrideSync 18 0.008387 0.02701 0.05851 2.30% FAbArray::OverrideSync() 18 0.00837 0.02699 0.05847 2.30% OverrideSync_finish() 18 0.007849 0.02635 0.05786 2.28% FlushFormatPlotfile::WriteToFile() 2 0.03525 0.03614 0.03787 1.49% WriteMultiLevelPlotfile() 2 0.03521 0.03593 0.03715 1.46% VisMF::Write(FabArray) 2 0.03423 0.0346 0.03541 1.39% ablastr::utils::communication::FillBoundary 144 0.03059 0.03114 0.03161 1.24% FabArray::FillBoundary() 126 0.02714 0.02817 0.02907 1.14% FillBoundary_nowait() 144 0.0158 0.02061 0.02579 1.01% WarpX::DampPML() 3 0.006769 0.0101 0.01207 0.47% ParticleContainer::Redistribute_impl() 1 0.00012 0.004537 0.009607 0.38% ParticleCopyPlan::build 1 3.189e-05 0.004427 0.009474 0.37% ParticleCopyPlan::buildMPIStart 1 2.798e-05 0.004416 0.009453 0.37% ParticleCopyPlan::doHandShake 1 2.147e-05 0.004407 0.009441 0.37% AmrMesh::MakeDistributionMap() 1 1.722e-05 0.003056 0.006088 0.24% Other 435 0.006678 0.014 0.02154 0.85% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9873 1.023 1.047 41.19% WarpX::MacroscopicEvolveE() 3 0.2876 0.3142 0.3438 13.52% amrex::Copy() 132 0.2304 0.2345 0.2386 9.39% FabArray::setVal() 132 0.2294 0.2313 0.2341 9.21% FabArray::ParallelCopy_finish() 132 0.01715 0.06314 0.1131 4.45% FabArray::LinComb() 66 0.0707 0.08957 0.1099 4.32% WarpX::EvolveB() 6 0.07481 0.08331 0.08896 3.50% FabArray::ParallelCopy_nowait() 132 0.07933 0.08174 0.08494 3.34% FillBoundary_finish() 132 0.01735 0.03614 0.07141 2.81% sample::Coarsen() 6 0.03598 0.03619 0.03667 1.44% PML::Exchange 66 0.0189 0.02072 0.02344 0.92% FillBoundary_nowait() 132 0.01415 0.01853 0.02332 0.92% VisMF::Write(FabArray) 1 0.01748 0.01775 0.01813 0.71% WriteMultiLevelPlotfile() 1 0.0002012 0.0005036 0.0006974 0.03% WarpX::Evolve::step 3 0.0001567 0.0003425 0.0005176 0.02% FabArray::ParallelCopy() 132 0.0003117 0.000391 0.0004784 0.02% ablastr::utils::communication::ParallelCopy 132 0.000315 0.0003862 0.0004334 0.02% ablastr::utils::communication::FillBoundary 132 0.0002234 0.0002802 0.0004325 0.02% FlushFormatPlotfile::WriteToFile() 1 1.335e-05 7.34e-05 0.0002468 0.01% MultiFab::Copy() 66 0.0002001 0.0002154 0.0002341 0.01% FabArray::FillBoundary() 114 0.0001175 0.0001313 0.0001477 0.01% Diagnostics::FilterComputePackFlush() 4 4.754e-05 5.071e-05 5.483e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.647e-05 2.212e-05 3.136e-05 0.00% FAbArray::OverrideSync() 18 1.401e-05 1.869e-05 2.177e-05 0.00% OverrideSync_finish() 18 9.378e-06 1.145e-05 1.285e-05 0.00% WarpX::Evolve() 1 2.592e-06 2.89e-06 3.416e-06 0.00% REG::WarpX::Evolve() 1 1.739e-06 2.195e-06 2.808e-06 0.00% Other 371 0.007637 0.01114 0.01344 0.53% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.263 2.263 2.264 89.04% WarpX::Evolve() 1 2.263 2.263 2.264 89.04% WarpX::Evolve::step 3 2.141 2.142 2.142 84.26% WarpX::OneStep_nosub() 3 1.875 1.875 1.875 73.76% PML::Exchange 66 0.6884 0.7225 0.7612 29.94% WarpX::MacroscopicEvolveE() 3 0.2876 0.3142 0.3438 13.52% amrex::Copy() 132 0.2304 0.2345 0.2386 9.39% FabArray::setVal() 132 0.2294 0.2313 0.2341 9.21% ablastr::utils::communication::ParallelCopy 132 0.09971 0.1463 0.1939 7.63% FabArray::ParallelCopy() 132 0.0994 0.1459 0.1935 7.61% MultiFab::Copy() 66 0.112 0.1173 0.1227 4.83% Diagnostics::FilterComputePackFlush() 4 0.1211 0.1214 0.1219 4.79% FabArray::ParallelCopy_finish() 132 0.01715 0.06314 0.1131 4.45% FabArray::LinComb() 66 0.0707 0.08957 0.1099 4.32% WarpX::EvolveB() 6 0.07481 0.08331 0.08896 3.50% FabArray::ParallelCopy_nowait() 132 0.07996 0.08236 0.08575 3.37% FillBoundary_finish() 132 0.01735 0.03614 0.07141 2.81% ablastr::utils::communication::OverrideSync 18 0.008387 0.02701 0.05851 2.30% FAbArray::OverrideSync() 18 0.00837 0.02699 0.05847 2.30% OverrideSync_finish() 18 0.007849 0.02635 0.05786 2.28% sample::Coarsen() 6 0.03598 0.03619 0.03667 1.44% ablastr::utils::communication::FillBoundary 132 0.02792 0.02847 0.02894 1.14% FabArray::FillBoundary() 114 0.02449 0.02551 0.02641 1.04% FillBoundary_nowait() 132 0.01444 0.01883 0.02362 0.93% FlushFormatPlotfile::WriteToFile() 1 0.01798 0.01836 0.01906 0.75% WriteMultiLevelPlotfile() 1 0.01797 0.01829 0.01881 0.74% VisMF::Write(FabArray) 1 0.01748 0.01775 0.01813 0.71% Other 371 0.01277 0.01718 0.02043 0.80% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 5 B 7 B 11 B 8192 KiB 8192 KiB 8192 KiB main() 280 3300 B 3305 B 3310 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2209 B 2210 B 2212 B 2560 B 2560 B 2560 B WarpX::InitData() 12 732 B 735 B 738 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 181 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3221 KiB 3305 KiB 3406 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3483 B 4609 B 5452 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3065 B 3249 B 3342 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-180-g763b7185b24b) finalized