Initializing AMReX (26.09-185-g19d64c697f1a)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-185-g19d64c697f1a) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.863447149 s; This step = 0.863447149 s; Avg. per step = 0.863447149 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.473930096 s; This step = 0.610482947 s; Avg. per step = 0.736965048 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.148222088 s; This step = 0.674291992 s; Avg. per step = 0.7160740293 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.583485242 TinyProfiler total time across processes [min...avg...max]: 2.588 ... 2.591 ... 2.595 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9883 1.033 1.06 40.85% WarpX::MacroscopicEvolveE() 3 0.2873 0.3143 0.3443 13.27% FabArray::setVal() 177 0.3217 0.3301 0.3388 13.06% amrex::Copy() 144 0.2432 0.2533 0.2616 10.08% FabArray::ParallelCopy_finish() 144 0.05243 0.1084 0.1772 6.83% FabArray::LinComb() 72 0.07704 0.09701 0.1183 4.56% FabArray::ParallelCopy_nowait() 144 0.08789 0.09063 0.09332 3.60% WarpX::EvolveB() 6 0.08067 0.08358 0.08943 3.45% WarpX::InitData() 1 0.03312 0.04992 0.08856 3.41% sample::Coarsen() 12 0.08312 0.08358 0.08435 3.25% FillBoundary_finish() 144 0.007071 0.03305 0.06561 2.53% VisMF::Write(FabArray) 2 0.03633 0.03805 0.04224 1.63% PML::Exchange 72 0.02084 0.02344 0.02662 1.03% FillBoundary_nowait() 144 0.01485 0.01943 0.0247 0.95% WarpX::DampPML() 3 0.009709 0.01051 0.01186 0.46% ParticleCopyPlan::doHandShake 1 1.395e-05 0.002916 0.006349 0.24% WriteMultiLevelPlotfile() 2 0.0006217 0.001445 0.002347 0.09% main() 1 0.001119 0.001689 0.002042 0.08% FlushFormatPlotfile::WriteToFile() 2 3.697e-05 0.0002346 0.0008239 0.03% FabArray::ParallelCopy() 144 0.0003548 0.0004347 0.0005203 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003764 0.0004208 0.0004994 0.02% WarpX::Evolve::step 3 0.0001851 0.0002869 0.0004018 0.02% ablastr::utils::communication::FillBoundary 144 0.0002119 0.0002529 0.0002762 0.01% MultiFab::Copy() 72 0.0001987 0.0002253 0.0002396 0.01% FabArray::FillBoundary() 126 0.0001378 0.0001522 0.0001651 0.01% Diagnostics::FilterComputePackFlush() 5 9.538e-05 0.0001021 0.00011 0.00% ablastr::utils::communication::OverrideSync 18 1.624e-05 2.187e-05 2.969e-05 0.00% FAbArray::OverrideSync() 18 1.597e-05 1.847e-05 2.135e-05 0.00% OverrideSync_finish() 18 8.71e-06 1.125e-05 1.354e-05 0.00% ParticleCopyPlan::buildMPIStart 1 6.479e-06 8.592e-06 1.154e-05 0.00% ParticleCopyPlan::build 1 3.245e-06 6.177e-06 1.034e-05 0.00% AmrMesh::MakeDistributionMap() 1 1.95e-06 3.733e-06 5.493e-06 0.00% ParticleContainer::Redistribute_impl() 1 4.428e-06 4.755e-06 4.937e-06 0.00% WarpX::Evolve() 1 2.317e-06 2.884e-06 3.318e-06 0.00% REG::WarpX::Evolve() 1 2.412e-06 2.799e-06 3.032e-06 0.00% Other 435 0.00128 0.004261 0.007578 0.29% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.578 2.581 2.584 99.56% REG::WarpX::Evolve() 1 2.27 2.274 2.276 87.71% WarpX::Evolve() 1 2.27 2.274 2.276 87.71% WarpX::Evolve::step 3 2.148 2.153 2.154 83.02% WarpX::OneStep_nosub() 3 1.883 1.883 1.883 72.57% PML::Exchange 72 0.7956 0.833 0.8878 34.22% WarpX::MacroscopicEvolveE() 3 0.2873 0.3143 0.3443 13.27% FabArray::setVal() 177 0.3217 0.3301 0.3388 13.06% Diagnostics::FilterComputePackFlush() 5 0.2689 0.2991 0.3231 12.45% WarpX::InitData() 1 0.3005 0.3048 0.3119 12.02% ablastr::utils::communication::ParallelCopy 144 0.1418 0.2007 0.2717 10.47% FabArray::ParallelCopy() 144 0.1414 0.2003 0.2712 10.45% amrex::Copy() 144 0.2432 0.2533 0.2616 10.08% FabArray::ParallelCopy_finish() 144 0.05243 0.1084 0.1772 6.83% MultiFab::Copy() 72 0.1186 0.1257 0.1347 5.19% FabArray::LinComb() 72 0.07704 0.09701 0.1183 4.56% FabArray::ParallelCopy_nowait() 144 0.08861 0.09149 0.09406 3.63% WarpX::EvolveB() 6 0.08067 0.08358 0.08943 3.45% sample::Coarsen() 12 0.08312 0.08358 0.08435 3.25% FillBoundary_finish() 144 0.007071 0.03305 0.06561 2.53% ablastr::utils::communication::OverrideSync 18 0.002265 0.0233 0.05902 2.27% FAbArray::OverrideSync() 18 0.002248 0.02328 0.05899 2.27% OverrideSync_finish() 18 0.001563 0.02266 0.05823 2.24% FlushFormatPlotfile::WriteToFile() 2 0.03762 0.03979 0.04429 1.71% WriteMultiLevelPlotfile() 2 0.03758 0.03955 0.04347 1.68% VisMF::Write(FabArray) 2 0.03633 0.03805 0.04224 1.63% ablastr::utils::communication::FillBoundary 144 0.02966 0.03015 0.03059 1.18% FabArray::FillBoundary() 126 0.02609 0.02711 0.02809 1.08% FillBoundary_nowait() 144 0.01531 0.01989 0.02518 0.97% WarpX::DampPML() 3 0.009709 0.01051 0.01186 0.46% ParticleContainer::Redistribute_impl() 1 0.0001046 0.003024 0.006465 0.25% ParticleCopyPlan::build 1 2.417e-05 0.002932 0.006362 0.25% ParticleCopyPlan::buildMPIStart 1 2.043e-05 0.002925 0.006356 0.24% ParticleCopyPlan::doHandShake 1 1.395e-05 0.002916 0.006349 0.24% AmrMesh::MakeDistributionMap() 1 2.132e-05 0.002714 0.005595 0.22% Other 435 0.006403 0.01351 0.02118 0.82% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 0.9883 1.033 1.06 40.85% WarpX::MacroscopicEvolveE() 3 0.2873 0.3143 0.3443 13.27% amrex::Copy() 132 0.2248 0.2346 0.2417 9.32% FabArray::setVal() 132 0.2289 0.2302 0.2317 8.93% FabArray::LinComb() 66 0.07085 0.08962 0.109 4.20% FabArray::ParallelCopy_finish() 132 0.01058 0.06661 0.1063 4.10% WarpX::EvolveB() 6 0.08067 0.08358 0.08943 3.45% FabArray::ParallelCopy_nowait() 132 0.08098 0.08343 0.08575 3.30% FillBoundary_finish() 132 0.00665 0.03212 0.06498 2.50% sample::Coarsen() 6 0.03635 0.03656 0.03699 1.43% PML::Exchange 66 0.01786 0.02052 0.0239 0.92% FillBoundary_nowait() 132 0.01363 0.01782 0.02265 0.87% VisMF::Write(FabArray) 1 0.01777 0.01794 0.0182 0.70% WriteMultiLevelPlotfile() 1 1.512e-05 0.0005873 0.0009648 0.04% FabArray::ParallelCopy() 132 0.0003169 0.0004021 0.0004867 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003518 0.0003943 0.0004696 0.02% WarpX::Evolve::step 3 0.0001851 0.0002869 0.0004018 0.02% ablastr::utils::communication::FillBoundary 132 0.0001957 0.0002349 0.0002558 0.01% FlushFormatPlotfile::WriteToFile() 1 1.389e-05 7.302e-05 0.0002449 0.01% MultiFab::Copy() 66 0.0001877 0.0002133 0.0002273 0.01% FabArray::FillBoundary() 114 0.0001278 0.0001421 0.0001541 0.01% Diagnostics::FilterComputePackFlush() 4 4.885e-05 5.345e-05 5.8e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.624e-05 2.187e-05 2.969e-05 0.00% FAbArray::OverrideSync() 18 1.597e-05 1.847e-05 2.135e-05 0.00% OverrideSync_finish() 18 8.71e-06 1.125e-05 1.354e-05 0.00% WarpX::Evolve() 1 2.317e-06 2.884e-06 3.318e-06 0.00% REG::WarpX::Evolve() 1 2.412e-06 2.799e-06 3.032e-06 0.00% Other 371 0.01059 0.01157 0.01318 0.51% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.27 2.274 2.276 87.71% WarpX::Evolve() 1 2.27 2.274 2.276 87.71% WarpX::Evolve::step 3 2.148 2.153 2.154 83.02% WarpX::OneStep_nosub() 3 1.883 1.883 1.883 72.57% PML::Exchange 66 0.6856 0.7266 0.7558 29.13% WarpX::MacroscopicEvolveE() 3 0.2873 0.3143 0.3443 13.27% amrex::Copy() 132 0.2248 0.2346 0.2417 9.32% FabArray::setVal() 132 0.2289 0.2302 0.2317 8.93% ablastr::utils::communication::ParallelCopy 132 0.09277 0.1515 0.1934 7.45% FabArray::ParallelCopy() 132 0.09242 0.1511 0.1929 7.43% MultiFab::Copy() 66 0.1112 0.1179 0.1258 4.85% Diagnostics::FilterComputePackFlush() 4 0.1217 0.1218 0.1222 4.71% FabArray::LinComb() 66 0.07085 0.08962 0.109 4.20% FabArray::ParallelCopy_finish() 132 0.01058 0.06661 0.1063 4.10% WarpX::EvolveB() 6 0.08067 0.08358 0.08943 3.45% FabArray::ParallelCopy_nowait() 132 0.08153 0.08408 0.0863 3.33% FillBoundary_finish() 132 0.00665 0.03212 0.06498 2.50% ablastr::utils::communication::OverrideSync 18 0.002265 0.0233 0.05902 2.27% FAbArray::OverrideSync() 18 0.002248 0.02328 0.05899 2.27% OverrideSync_finish() 18 0.001563 0.02266 0.05823 2.24% sample::Coarsen() 6 0.03635 0.03656 0.03699 1.43% ablastr::utils::communication::FillBoundary 132 0.02693 0.02744 0.02786 1.07% FabArray::FillBoundary() 114 0.02339 0.02442 0.02544 0.98% FillBoundary_nowait() 132 0.01395 0.01813 0.02297 0.89% FlushFormatPlotfile::WriteToFile() 1 0.01849 0.01863 0.01876 0.72% WriteMultiLevelPlotfile() 1 0.01833 0.01856 0.01874 0.72% VisMF::Write(FabArray) 1 0.01777 0.01794 0.0182 0.70% Other 371 0.01543 0.0178 0.02082 0.80% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 5 B 6 B 10 B 8192 KiB 8192 KiB 8192 KiB main() 280 3304 B 3307 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2175 B 2177 B 2179 B 2560 B 2560 B 2560 B WarpX::InitData() 12 733 B 735 B 740 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 182 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3197 KiB 3360 KiB 3474 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3378 B 4318 B 6238 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 2823 B 3487 B 4080 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-185-g19d64c697f1a) finalized