Initializing AMReX (26.09-190-g541acefee8d0)... MPI initialized with 4 MPI processes MPI initialized with thread support level 3 AMReX (26.09-190-g541acefee8d0) initialized WarpX (4fa5cde3d7bd) _____ __ .__ / _ \________/ |_ ____ _____ |__| ______ / /_\ \_ __ \ __\/ __ \ / \| |/ ___/ / | \ | \/| | \ ___/| Y Y \ |\___ \ \____|__ /__| |__| \___ >__|_| /__/____ > \/ \/ \/ \/ Level 0: dt = 7.703332806e-16 ; dx = 5e-07 ; dy = 5e-07 ; dz = 5e-07 --- INFO : we are in init data of macro Grids Summary: Level 0 4 grids 2097152 cells 100 % of domain smallest grid: 128 x 64 x 64 biggest grid: 128 x 64 x 64 ------------------------------------------------------------------------------- --------------------------- MAIN EM PIC PARAMETERS ---------------------------- ------------------------------------------------------------------------------- Precision: | DOUBLE Particle precision: | DOUBLE Geometry: | 3D (XYZ) Operation mode: | Electromagnetic | - macroscopic | - Lax-Wendroff algorithm ------------------------------------------------------------------------------- Current Deposition: | Esirkepov Particle Pusher: | Boris Charge Deposition: | standard Field Gathering: | energy-conserving Particle Shape Factor:| 0 ------------------------------------------------------------------------------- Maxwell Solver: | Yee ------------------------------------------------------------------------------- For full input parameters, see the file: warpx_used_inputs --- INFO : Writing plotfile diags/plt000000 STEP 1 starts ... Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] **** WARNINGS ****************************************************************** * GLOBAL warning list after [ FIRST STEP ] * * --> [! ] [Species] [raised 4 times] * particles.nspecies is ignored. Just use particles.species_names please. * @ Raised by: ALL * ******************************************************************************** STEP 1 ends. TIME = 7.703332806e-16 DT = 7.703332806e-16 Evolve time = 0.874702298 s; This step = 0.874702298 s; Avg. per step = 0.874702298 s STEP 2 starts ... STEP 2 ends. TIME = 1.540666561e-15 DT = 7.703332806e-16 Evolve time = 1.492942284 s; This step = 0.618239986 s; Avg. per step = 0.746471142 s STEP 3 starts ... STEP 3 ends. TIME = 2.310999842e-15 DT = 7.703332806e-16 Evolve time = 2.177630614 s; This step = 0.68468833 s; Avg. per step = 0.7258768713 s --- INFO : Writing plotfile diags/plt000003 Total Time : 2.64071969 TinyProfiler total time across processes [min...avg...max]: 2.656 ... 2.66 ... 2.663 -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.03 1.058 1.09 40.94% WarpX::MacroscopicEvolveE() 3 0.2891 0.3159 0.3439 12.92% FabArray::setVal() 177 0.3297 0.3359 0.3428 12.87% amrex::Copy() 144 0.2475 0.2536 0.2585 9.71% FabArray::ParallelCopy_finish() 144 0.01796 0.1214 0.2001 7.51% FabArray::LinComb() 72 0.0756 0.09644 0.1181 4.44% WarpX::InitData() 1 0.03492 0.05128 0.09383 3.52% FabArray::ParallelCopy_nowait() 144 0.08684 0.08916 0.09118 3.42% WarpX::EvolveB() 6 0.0777 0.08542 0.08929 3.35% sample::Coarsen() 12 0.08698 0.08774 0.08884 3.34% FillBoundary_finish() 144 0.005625 0.03618 0.06431 2.42% VisMF::Write(FabArray) 2 0.03632 0.03765 0.03945 1.48% PML::Exchange 72 0.02321 0.02387 0.02532 0.95% FillBoundary_nowait() 144 0.01514 0.01974 0.02429 0.91% WarpX::DampPML() 3 0.007765 0.01121 0.01535 0.58% ParticleCopyPlan::doHandShake 1 1.82e-05 0.004086 0.008289 0.31% main() 1 0.00158 0.002745 0.003918 0.15% WriteMultiLevelPlotfile() 2 0.000501 0.001188 0.001877 0.07% FlushFormatPlotfile::WriteToFile() 2 3.533e-05 0.0001941 0.0006485 0.02% FabArray::ParallelCopy() 144 0.0003625 0.0004432 0.0005346 0.02% WarpX::Evolve::step 3 0.000158 0.0002845 0.0004375 0.02% ablastr::utils::communication::ParallelCopy 144 0.0003555 0.0003933 0.0004193 0.02% ablastr::utils::communication::FillBoundary 144 0.0002196 0.0002441 0.0002697 0.01% MultiFab::Copy() 72 0.0002173 0.0002264 0.0002326 0.01% FabArray::FillBoundary() 126 0.0001389 0.00015 0.0001592 0.01% Diagnostics::FilterComputePackFlush() 5 9.719e-05 0.0001032 0.0001155 0.00% ablastr::utils::communication::OverrideSync 18 1.324e-05 2.254e-05 2.964e-05 0.00% FAbArray::OverrideSync() 18 1.473e-05 2.001e-05 2.469e-05 0.00% ParticleCopyPlan::build 1 3.433e-06 7.871e-06 1.447e-05 0.00% OverrideSync_finish() 18 9.848e-06 1.185e-05 1.44e-05 0.00% ParticleCopyPlan::buildMPIStart 1 6.838e-06 9.123e-06 1.393e-05 0.00% REG::WarpX::Evolve() 1 2.093e-06 4.02e-06 9.196e-06 0.00% ParticleContainer::Redistribute_impl() 1 3.721e-06 5.45e-06 7.132e-06 0.00% WarpX::Evolve() 1 2.661e-06 2.875e-06 3.155e-06 0.00% Other 436 0.001283 0.004447 0.007764 0.29% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- main() 1 2.635 2.638 2.641 99.17% REG::WarpX::Evolve() 1 2.302 2.304 2.305 86.57% WarpX::Evolve() 1 2.302 2.304 2.305 86.57% WarpX::Evolve::step 3 2.178 2.178 2.179 81.83% WarpX::OneStep_nosub() 3 1.911 1.912 1.912 71.81% PML::Exchange 72 0.756 0.8466 0.912 34.25% Diagnostics::FilterComputePackFlush() 5 0.266 0.3228 0.3507 13.17% WarpX::MacroscopicEvolveE() 3 0.2891 0.3159 0.3439 12.92% FabArray::setVal() 177 0.3297 0.3359 0.3428 12.87% WarpX::InitData() 1 0.3282 0.3318 0.3348 12.57% ablastr::utils::communication::ParallelCopy 144 0.1082 0.2123 0.2918 10.96% FabArray::ParallelCopy() 144 0.1078 0.2119 0.2914 10.94% amrex::Copy() 144 0.2475 0.2536 0.2585 9.71% FabArray::ParallelCopy_finish() 144 0.01796 0.1214 0.2001 7.51% MultiFab::Copy() 72 0.1191 0.1253 0.1317 4.95% FabArray::LinComb() 72 0.0756 0.09644 0.1181 4.44% FabArray::ParallelCopy_nowait() 144 0.08758 0.08999 0.09216 3.46% WarpX::EvolveB() 6 0.0777 0.08542 0.08929 3.35% sample::Coarsen() 12 0.08698 0.08774 0.08884 3.34% FillBoundary_finish() 144 0.005625 0.03618 0.06431 2.42% ablastr::utils::communication::OverrideSync 18 0.0008936 0.02738 0.05135 1.93% FAbArray::OverrideSync() 18 0.0008803 0.02736 0.05132 1.93% OverrideSync_finish() 18 0.0001813 0.0267 0.05069 1.90% FlushFormatPlotfile::WriteToFile() 2 0.03712 0.03909 0.04137 1.55% WriteMultiLevelPlotfile() 2 0.03708 0.03889 0.04072 1.53% VisMF::Write(FabArray) 2 0.03632 0.03765 0.03945 1.48% ablastr::utils::communication::FillBoundary 144 0.02902 0.02948 0.02993 1.12% FabArray::FillBoundary() 126 0.02587 0.0268 0.02779 1.04% FillBoundary_nowait() 144 0.01558 0.02018 0.02473 0.93% WarpX::DampPML() 3 0.007765 0.01121 0.01535 0.58% ParticleContainer::Redistribute_impl() 1 0.000123 0.004204 0.008449 0.32% ParticleCopyPlan::build 1 2.899e-05 0.004104 0.008318 0.31% ParticleCopyPlan::buildMPIStart 1 2.504e-05 0.004095 0.008303 0.31% ParticleCopyPlan::doHandShake 1 1.82e-05 0.004086 0.008289 0.31% Other 436 0.006046 0.01617 0.02658 1.00% -------------------------------------------------------------------------------------------- BEGIN REGION WarpX::Evolve() -------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % -------------------------------------------------------------------------------------------- WarpX::OneStep_nosub() 3 1.03 1.058 1.09 40.94% WarpX::MacroscopicEvolveE() 3 0.2891 0.3159 0.3439 12.92% amrex::Copy() 132 0.2276 0.234 0.2379 8.93% FabArray::setVal() 132 0.23 0.2324 0.2346 8.81% FabArray::ParallelCopy_finish() 132 0.01117 0.06041 0.1102 4.14% FabArray::LinComb() 66 0.06983 0.08887 0.1088 4.09% WarpX::EvolveB() 6 0.0777 0.08542 0.08929 3.35% FabArray::ParallelCopy_nowait() 132 0.07943 0.08185 0.08379 3.15% FillBoundary_finish() 132 0.00518 0.03528 0.06297 2.36% sample::Coarsen() 6 0.03743 0.03762 0.03798 1.43% FillBoundary_nowait() 132 0.01389 0.01808 0.02223 0.83% PML::Exchange 66 0.02036 0.02092 0.02202 0.83% VisMF::Write(FabArray) 1 0.01914 0.02043 0.02171 0.82% WriteMultiLevelPlotfile() 1 0.0001928 0.0003864 0.0005297 0.02% FabArray::ParallelCopy() 132 0.000333 0.0004097 0.0004998 0.02% WarpX::Evolve::step 3 0.000158 0.0002845 0.0004375 0.02% ablastr::utils::communication::ParallelCopy 132 0.0003327 0.0003693 0.0003957 0.01% FlushFormatPlotfile::WriteToFile() 1 1.312e-05 7.662e-05 0.0002625 0.01% ablastr::utils::communication::FillBoundary 132 0.000204 0.0002256 0.0002492 0.01% MultiFab::Copy() 66 0.0002054 0.0002125 0.0002197 0.01% FabArray::FillBoundary() 114 0.0001289 0.0001397 0.0001482 0.01% Diagnostics::FilterComputePackFlush() 4 4.804e-05 5.388e-05 5.811e-05 0.00% ablastr::utils::communication::OverrideSync 18 1.324e-05 2.254e-05 2.964e-05 0.00% FAbArray::OverrideSync() 18 1.473e-05 2.001e-05 2.469e-05 0.00% OverrideSync_finish() 18 9.848e-06 1.185e-05 1.44e-05 0.00% REG::WarpX::Evolve() 1 2.093e-06 4.02e-06 9.196e-06 0.00% WarpX::Evolve() 1 2.661e-06 2.875e-06 3.155e-06 0.00% Other 371 0.008635 0.01224 0.01659 0.62% -------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % -------------------------------------------------------------------------------------------- REG::WarpX::Evolve() 1 2.302 2.304 2.305 86.57% WarpX::Evolve() 1 2.302 2.304 2.305 86.57% WarpX::Evolve::step 3 2.178 2.178 2.179 81.83% WarpX::OneStep_nosub() 3 1.911 1.912 1.912 71.81% PML::Exchange 66 0.6846 0.72 0.759 28.51% WarpX::MacroscopicEvolveE() 3 0.2891 0.3159 0.3439 12.92% amrex::Copy() 132 0.2276 0.234 0.2379 8.93% FabArray::setVal() 132 0.23 0.2324 0.2346 8.81% ablastr::utils::communication::ParallelCopy 132 0.09377 0.1437 0.1946 7.31% FabArray::ParallelCopy() 132 0.09341 0.1433 0.1942 7.29% Diagnostics::FilterComputePackFlush() 4 0.1238 0.1251 0.1265 4.75% MultiFab::Copy() 66 0.11 0.1165 0.1222 4.59% FabArray::ParallelCopy_finish() 132 0.01117 0.06041 0.1102 4.14% FabArray::LinComb() 66 0.06983 0.08887 0.1088 4.09% WarpX::EvolveB() 6 0.0777 0.08542 0.08929 3.35% FabArray::ParallelCopy_nowait() 132 0.07997 0.08247 0.08452 3.17% FillBoundary_finish() 132 0.00518 0.03528 0.06297 2.36% ablastr::utils::communication::OverrideSync 18 0.0008936 0.02738 0.05135 1.93% FAbArray::OverrideSync() 18 0.0008803 0.02736 0.05132 1.93% OverrideSync_finish() 18 0.0001813 0.0267 0.05069 1.90% sample::Coarsen() 6 0.03743 0.03762 0.03798 1.43% ablastr::utils::communication::FillBoundary 132 0.02625 0.02675 0.02723 1.02% FabArray::FillBoundary() 114 0.02315 0.02409 0.02511 0.94% FlushFormatPlotfile::WriteToFile() 1 0.01954 0.02092 0.02251 0.85% FillBoundary_nowait() 132 0.0142 0.01838 0.02251 0.85% WriteMultiLevelPlotfile() 1 0.01953 0.02085 0.02225 0.84% VisMF::Write(FabArray) 1 0.01914 0.02043 0.02171 0.82% Other 371 0.01304 0.01779 0.02339 0.88% -------------------------------------------------------------------------------------------- END REGION WarpX::Evolve() Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [roger_pec_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::my_constants.TP(nvals = 1) :: [5.4545e-10] [TOP]::my_constants.dx(nvals = 3) :: [Lx, /, nx] [TOP]::my_constants.dy(nvals = 3) :: [Ly, /, ny] [TOP]::my_constants.dz(nvals = 3) :: [Lz, /, nz] [TOP]::my_constants.eps_r_nb(nvals = 1) :: [13.] [TOP]::my_constants.flag_none(nvals = 1) :: [0] [TOP]::my_constants.flag_ss(nvals = 1) :: [2] [TOP]::my_constants.mu_r_nb(nvals = 1) :: [1.0] [TOP]::my_constants.sigma_nb(nvals = 1) :: [1.e7] [TOP]::plt(nvals = 1) :: [roger_pec_plt] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 4 5 B 7 B 9 B 8192 KiB 8192 KiB 8192 KiB main() 280 3301 B 3307 B 3311 B 3584 B 3584 B 3584 B WarpX::OneStep_nosub() 24 2160 B 2162 B 2164 B 2560 B 2560 B 2560 B WarpX::InitData() 12 724 B 733 B 739 B 768 B 768 B 768 B Unprofiled 88 0 B 0 B 0 B 256 B 256 B 256 B -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- WarpX::InitData() 286 151 MiB 166 MiB 181 MiB 155 MiB 171 MiB 187 MiB PML::Exchange 1296 3058 KiB 3322 KiB 3479 KiB 10 MiB 10 MiB 11 MiB FillBoundary_nowait() 1074 3470 B 4161 B 5248 B 391 KiB 394 KiB 395 KiB FabArray::ParallelCopy_nowait() 1152 3167 B 3400 B 3674 B 86 KiB 104 KiB 122 KiB --------------------------------------------------------------------------------------------------------------- AMReX (26.09-190-g541acefee8d0) finalized