Initializing AMReX (26.04-116-g93329ebb8af9)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 AMReX (26.04-116-g93329ebb8af9) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 2250000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 91 radius at r_cutoff 205875000 Maximum HSE Error = 0.006358 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 1 dr of MAESTRO base state = 1125000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 182 radius at r_cutoff 205312500 Maximum HSE Error = 0.001719 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 2 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble_3d_amr_pltInitData after InitData inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.560696442 inner sponge: r_sp , r_tp : 187875000, 223875000 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.004526391 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble_3d_amr_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.605905713 Call to firstdt for level 0 gives dt_lev = 0.001900185702 Multiplying dt_lev by init_shrink; dt_lev = 0.001900185702 Call to firstdt for level 1 gives dt_lev = 0.001145985589 Multiplying dt_lev by init_shrink; dt_lev = 0.001145985589 Call to firstdt for level 2 gives dt_lev = 0.0005809423507 Multiplying dt_lev by init_shrink; dt_lev = 0.0005809423507 Minimum firstdt over all levels = 0.0005809423507 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 3375.753789 MLMG: Initial residual (resid0) = 3375.753789 MLMG: Final Iter. 7 resid, resid/bnorm = 2.235686154e-07, 6.622776107e-11 MLMG: Timers: Solve = 0.129808372 Iter = 0.125220093 Bottom = 0.002364685 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.3446506058 Call to estdt for level 1 gives dt_lev = 0.2371958412 Call to estdt for level 2 gives dt_lev = 0.166684761 Minimum estdt over all levels = 0.166684761 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.166684761 Multiplying dt by init_shrink; dt = 0.166684761 Ignoring this new dt since it's larger than the previous dt = 0.0005809423507 Writing plotfile reacting_bubble_3d_amr_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.553952602 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3473324.294 MLMG: Initial residual (resid0) = 3473324.294 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002037179191, 5.86521447e-10 MLMG: Timers: Solve = 0.055521839 Iter = 0.051019583 Bottom = 0.001882715 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3473321.253 MLMG: Initial residual (resid0) = 152.3725369 MLMG: Final Iter. 3 resid, resid/bnorm = 0.007682696235, 2.211916398e-09 MLMG: Timers: Solve = 0.025214623 Iter = 0.0219067 Bottom = 0.000774354 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.202681384e+10 MLMG: Initial residual (resid0) = 1.202681384e+10 MLMG: Final Iter. 9 resid, resid/bnorm = 0.1560515165, 1.297529991e-11 MLMG: Timers: Solve = 0.166867961 Iter = 0.162411769 Bottom = 0.003449071 Done calling nodal solver Timestep 0 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.539631565 seconds MAC Proj :0.098422012 seconds Nodal Proj :0.207642252 seconds Reactions :0.824099527 seconds Misc :0.17766311 seconds Base State :0.003383572 seconds Time to advance time step: 1.851203493 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.565223865 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 807172.7037 MLMG: Initial residual (resid0) = 807172.7037 MLMG: Final Iter. 6 resid, resid/bnorm = 0.005742711946, 7.114601274e-09 MLMG: Timers: Solve = 0.045696353 Iter = 0.042545101 Bottom = 0.00156585 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 807172.7215 MLMG: Initial residual (resid0) = 0.817319555 MLMG: Final Iter. 2 resid, resid/bnorm = 0.0002824792464, 3.499613389e-10 MLMG: Timers: Solve = 0.0181987 Iter = 0.015059629 Bottom = 0.000464381 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6986896.692 MLMG: Initial residual (resid0) = 6986896.692 MLMG: Final Iter. 9 resid, resid/bnorm = 9.065592894e-05, 1.297513516e-11 MLMG: Timers: Solve = 0.166762436 Iter = 0.162290999 Bottom = 0.003118484 Done calling nodal solver Timestep 1 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.535742854 seconds MAC Proj :0.081420349 seconds Nodal Proj :0.20750484 seconds Reactions :0.783294199 seconds Misc :0.175305514 seconds Base State :0.00341617 seconds Time to advance time step: 1.787416556 Call to estdt for level 0 gives dt_lev = 0.4121759496 Call to estdt for level 1 gives dt_lev = 0.2828508339 Call to estdt for level 2 gives dt_lev = 0.198551117 Minimum estdt over all levels = 0.198551117 Call to estdt at beginning of step 2 gives dt =0.198551117 dt_growth factor limits the new dt = 0.0006390365858  Timestep 2 starts with TIME = 0.0005809423507 DT = 0.0006390365858 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 862408.7998 MLMG: Initial residual (resid0) = 862408.7998 MLMG: Final Iter. 6 resid, resid/bnorm = 0.005907586077, 6.850099487e-09 MLMG: Timers: Solve = 0.046528006 Iter = 0.043112364 Bottom = 0.001689758 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 862410.8019 MLMG: Initial residual (resid0) = 10430.26042 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001076961057, 1.248779647e-09 MLMG: Timers: Solve = 0.032509377 Iter = 0.02934229 Bottom = 0.000943013 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7717168.571 MLMG: Initial residual (resid0) = 7717168.571 MLMG: Final Iter. 9 resid, resid/bnorm = 9.889493231e-05, 1.281492446e-11 MLMG: Timers: Solve = 0.166619488 Iter = 0.162153408 Bottom = 0.003263602 Done calling nodal solver Timestep 2 ends with TIME = 0.001219978937 DT = 0.0006390365858 Timing summary: Advection :0.541008889 seconds MAC Proj :0.095948011 seconds Nodal Proj :0.207065318 seconds Reactions :0.783657953 seconds Misc :0.175674094 seconds Base State :0.00338678 seconds Time to advance time step: 1.803607376 Call to estdt for level 0 gives dt_lev = 0.412322209 Call to estdt for level 1 gives dt_lev = 0.2829378846 Call to estdt for level 2 gives dt_lev = 0.1986205604 Minimum estdt over all levels = 0.1986205604 Call to estdt at beginning of step 3 gives dt =0.1986205604 dt_growth factor limits the new dt = 0.0007029402444  Timestep 3 starts with TIME = 0.001219978937 DT = 0.0007029402444 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 978885.4037 MLMG: Initial residual (resid0) = 978885.4037 MLMG: Final Iter. 6 resid, resid/bnorm = 0.006845862372, 6.99352789e-09 MLMG: Timers: Solve = 0.046159963 Iter = 0.042990616 Bottom = 0.001772244 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 978885.8232 MLMG: Initial residual (resid0) = 1095.718153 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001084100963, 1.107484588e-09 MLMG: Timers: Solve = 0.033179637 Iter = 0.030026947 Bottom = 0.00090023 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 8489041.657 MLMG: Initial residual (resid0) = 8489041.657 MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001069697319, 1.260091965e-11 MLMG: Timers: Solve = 0.166156382 Iter = 0.161512661 Bottom = 0.003086534 Done calling nodal solver Timestep 3 ends with TIME = 0.001922919181 DT = 0.0007029402444 Timing summary: Advection :0.533902534 seconds MAC Proj :0.096250479 seconds Nodal Proj :0.206156939 seconds Reactions :0.766863353 seconds Misc :0.173776463 seconds Base State :0.003404742 seconds Time to advance time step: 1.777206354 Writing plotfile 3 inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.55640478 Total Time: 11.66891854 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble_3d_amr_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.plot_file(nvals = 1) :: [reacting_bubble_3d_amr_plt] AMReX (26.04-116-g93329ebb8af9) finalized