Initializing AMReX (26.06-5-g65db2e4e678a)... MPI initialized with 2 MPI processes MPI initialized with thread support level 0 OMP initialized with 4 OMP threads AMReX (26.06-5-g65db2e4e678a) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 2250000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 91 radius at r_cutoff 205875000 Maximum HSE Error = 0.006358 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 1 dr of MAESTRO base state = 1125000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 182 radius at r_cutoff 205312500 Maximum HSE Error = 0.001719 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 2 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble_omp_3d_pltInitData after InitData inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.73875595 inner sponge: r_sp , r_tp : 187875000, 223875000 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.008317761 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble_omp_3d_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.728924028 Call to firstdt for level 0 gives dt_lev = 0.001900185702 Multiplying dt_lev by init_shrink; dt_lev = 0.001900185702 Call to firstdt for level 1 gives dt_lev = 0.001145985589 Multiplying dt_lev by init_shrink; dt_lev = 0.001145985589 Call to firstdt for level 2 gives dt_lev = 0.0005809423507 Multiplying dt_lev by init_shrink; dt_lev = 0.0005809423507 Minimum firstdt over all levels = 0.0005809423507 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 3375.753789 MLMG: Initial residual (resid0) = 3375.753789 MLMG: Final Iter. 7 resid, resid/bnorm = 2.235684933e-07, 6.622772493e-11 MLMG: Timers: Solve = 0.260068848 Iter = 0.25111695 Bottom = 0.039227346 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.3446506058 Call to estdt for level 1 gives dt_lev = 0.2371958412 Call to estdt for level 2 gives dt_lev = 0.166684761 Minimum estdt over all levels = 0.166684761 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.166684761 Multiplying dt by init_shrink; dt = 0.166684761 Ignoring this new dt since it's larger than the previous dt = 0.0005809423507 Writing plotfile reacting_bubble_omp_3d_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.729630498 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3473324.294 MLMG: Initial residual (resid0) = 3473324.294 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002037152648, 5.865138051e-10 MLMG: Timers: Solve = 0.1935735 Iter = 0.185754602 Bottom = 0.062572802 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3473321.253 MLMG: Initial residual (resid0) = 152.3934099 MLMG: Final Iter. 3 resid, resid/bnorm = 0.008191417131, 2.358381657e-09 MLMG: Timers: Solve = 0.091151475 Iter = 0.083740723 Bottom = 0.029463639 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.202681385e+10 MLMG: Initial residual (resid0) = 1.202681385e+10 MLMG: Final Iter. 9 resid, resid/bnorm = 0.156055212, 1.297560717e-11 MLMG: Timers: Solve = 0.336235047 Iter = 0.328080768 Bottom = 0.054962145 Done calling nodal solver Timestep 0 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.845017349 seconds MAC Proj :0.329401666 seconds Nodal Proj :0.394204753 seconds Reactions :1.038840686 seconds Misc :0.225214705 seconds Base State :0.00606946 seconds Time to advance time step: 2.838006269 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.720301971 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 807172.7048 MLMG: Initial residual (resid0) = 807172.7048 MLMG: Final Iter. 6 resid, resid/bnorm = 0.005743047222, 7.115016636e-09 MLMG: Timers: Solve = 0.163636131 Iter = 0.156721623 Bottom = 0.050703316 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 807172.7226 MLMG: Initial residual (resid0) = 0.8173157587 MLMG: Final Iter. 2 resid, resid/bnorm = 0.000282476336, 3.499577328e-10 MLMG: Timers: Solve = 0.059243564 Iter = 0.05262043 Bottom = 0.015833031 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6986896.693 MLMG: Initial residual (resid0) = 6986896.693 MLMG: Final Iter. 9 resid, resid/bnorm = 9.066000348e-05, 1.297571833e-11 MLMG: Timers: Solve = 0.336351377 Iter = 0.328236761 Bottom = 0.054287165 Done calling nodal solver Timestep 1 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.844323585 seconds MAC Proj :0.269505375 seconds Nodal Proj :0.394330281 seconds Reactions :1.034505334 seconds Misc :0.210740795 seconds Base State :0.006150881 seconds Time to advance time step: 2.758344963 Call to estdt for level 0 gives dt_lev = 0.4121759495 Call to estdt for level 1 gives dt_lev = 0.2828508336 Call to estdt for level 2 gives dt_lev = 0.1985511167 Minimum estdt over all levels = 0.1985511167 Call to estdt at beginning of step 2 gives dt =0.1985511167 dt_growth factor limits the new dt = 0.0006390365858  Timestep 2 starts with TIME = 0.0005809423507 DT = 0.0006390365858 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 985752.4458 MLMG: Initial residual (resid0) = 985752.4458 MLMG: Final Iter. 6 resid, resid/bnorm = 0.005930115469, 6.01582628e-09 MLMG: Timers: Solve = 0.164417749 Iter = 0.157218259 Bottom = 0.051006308 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 985752.8287 MLMG: Initial residual (resid0) = 10430.2617 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001043294731, 1.05837356e-09 MLMG: Timers: Solve = 0.119622215 Iter = 0.112255609 Bottom = 0.038721289 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7717168.504 MLMG: Initial residual (resid0) = 7717168.504 MLMG: Final Iter. 9 resid, resid/bnorm = 9.889446665e-05, 1.281486423e-11 MLMG: Timers: Solve = 0.334123581 Iter = 0.32600767 Bottom = 0.05118709 Done calling nodal solver Timestep 2 ends with TIME = 0.001219978937 DT = 0.0006390365858 Timing summary: Advection :0.842062208 seconds MAC Proj :0.328395457 seconds Nodal Proj :0.391972977 seconds Reactions :1.037723543 seconds Misc :0.210214966 seconds Base State :0.006147956 seconds Time to advance time step: 2.810679585 Call to estdt for level 0 gives dt_lev = 0.4123222065 Call to estdt for level 1 gives dt_lev = 0.2829378818 Call to estdt for level 2 gives dt_lev = 0.1986205547 Minimum estdt over all levels = 0.1986205547 Call to estdt at beginning of step 3 gives dt =0.1986205547 dt_growth factor limits the new dt = 0.0007029402444  Timestep 3 starts with TIME = 0.001219978937 DT = 0.0007029402444 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1182346.252 MLMG: Initial residual (resid0) = 1182346.252 MLMG: Final Iter. 6 resid, resid/bnorm = 0.007110078586, 6.013533325e-09 MLMG: Timers: Solve = 0.16735047 Iter = 0.160134339 Bottom = 0.053881713 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1182346.671 MLMG: Initial residual (resid0) = 1095.719418 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001084466421, 9.172152699e-10 MLMG: Timers: Solve = 0.109352911 Iter = 0.102204973 Bottom = 0.02893143 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 8489041.404 MLMG: Initial residual (resid0) = 8489041.404 MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001069696154, 1.260090632e-11 MLMG: Timers: Solve = 0.332979352 Iter = 0.324850776 Bottom = 0.050784441 Done calling nodal solver Timestep 3 ends with TIME = 0.001922919181 DT = 0.0007029402444 Timing summary: Advection :0.84251104 seconds MAC Proj :0.320996587 seconds Nodal Proj :0.39086224 seconds Reactions :1.036273182 seconds Misc :0.214425352 seconds Base State :0.006144586 seconds Time to advance time step: 2.805397555 Writing plotfile 3 inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.724799807 Total Time: 16.78160573 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble_omp_3d_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.plot_file(nvals = 1) :: [reacting_bubble_omp_3d_plt] AMReX (26.06-5-g65db2e4e678a) finalized