Initializing AMReX (26.06-13-g87eac2327e9f)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 AMReX (26.06-13-g87eac2327e9f) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 2250000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 91 radius at r_cutoff 205875000 Maximum HSE Error = 0.006358 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 1 dr of MAESTRO base state = 1125000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 182 radius at r_cutoff 205312500 Maximum HSE Error = 0.001719 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 2 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble_2d_amr_pltInitData after InitData inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.089472276 inner sponge: r_sp , r_tp : 187875000, 223875000 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.000598661 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble_2d_amr_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.087960855 Call to firstdt for level 0 gives dt_lev = 0.001900186535 Multiplying dt_lev by init_shrink; dt_lev = 0.001900186535 Call to firstdt for level 1 gives dt_lev = 0.001060149082 Multiplying dt_lev by init_shrink; dt_lev = 0.001060149082 Call to firstdt for level 2 gives dt_lev = 0.0005417438695 Multiplying dt_lev by init_shrink; dt_lev = 0.0005417438695 Minimum firstdt over all levels = 0.0005417438695 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 12829.54334 MLMG: Initial residual (resid0) = 12829.54334 MLMG: Final Iter. 4 resid, resid/bnorm = 0.002447855116, 1.907983043e-07 MLMG: Timers: Solve = 0.009353284 Iter = 0.008823305 Bottom = 0.000132525 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.3355212738 Call to estdt for level 1 gives dt_lev = 0.2352464797 Call to estdt for level 2 gives dt_lev = 0.1661095905 Minimum estdt over all levels = 0.1661095905 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1661095905 Multiplying dt by init_shrink; dt = 0.1661095905 Ignoring this new dt since it's larger than the previous dt = 0.0005417438695 Writing plotfile reacting_bubble_2d_amr_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.087687647 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0005417438695 Cell Count: Level 0, 10240 cells Level 1, 6144 cells Level 2, 18432 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3239326.635 MLMG: Initial residual (resid0) = 3239326.635 MLMG: Final Iter. 7 resid, resid/bnorm = 0.01097364549, 3.387631668e-09 MLMG: Timers: Solve = 0.008709476 Iter = 0.007984312 Bottom = 0.000222856 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3239323.796 MLMG: Initial residual (resid0) = 725.3963012 MLMG: Final Iter. 3 resid, resid/bnorm = 0.00311270935, 9.609133096e-10 MLMG: Timers: Solve = 0.004030429 Iter = 0.003447547 Bottom = 8.7202e-05 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.199753161e+10 MLMG: Initial residual (resid0) = 1.199753161e+10 MLMG: Final Iter. 8 resid, resid/bnorm = 0.3725357726, 3.10510349e-11 MLMG: Timers: Solve = 0.017417188 Iter = 0.016862767 Bottom = 0.000218213 Done calling nodal solver Timestep 0 ends with TIME = 0.0005417438695 DT = 0.0005417438695 Timing summary: Advection :0.048416219 seconds MAC Proj :0.016534739 seconds Nodal Proj :0.022464216 seconds Reactions :0.117955931 seconds Misc :0.023221822 seconds Base State :0.000805094 seconds Time to advance time step: 0.234160299 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.089577854 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0005417438695 Cell Count: Level 0, 10240 cells Level 1, 6144 cells Level 2, 18432 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 942189.5179 MLMG: Initial residual (resid0) = 942189.5179 MLMG: Final Iter. 7 resid, resid/bnorm = 0.0007745456169, 8.220698725e-10 MLMG: Timers: Solve = 0.008552425 Iter = 0.007956339 Bottom = 0.000213093 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 942189.5506 MLMG: Initial residual (resid0) = 1.101718783 MLMG: Final Iter. 1 resid, resid/bnorm = 0.006009219498, 6.377930528e-09 MLMG: Timers: Solve = 0.001912776 Iter = 0.001311495 Bottom = 3.8112e-05 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6499597.232 MLMG: Initial residual (resid0) = 6499597.232 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0002018127598, 3.105004088e-11 MLMG: Timers: Solve = 0.017560698 Iter = 0.017003771 Bottom = 0.000219981 Done calling nodal solver Timestep 1 ends with TIME = 0.0005417438695 DT = 0.0005417438695 Timing summary: Advection :0.047472622 seconds MAC Proj :0.014076987 seconds Nodal Proj :0.022543425 seconds Reactions :0.117849077 seconds Misc :0.023431464 seconds Base State :0.000798473 seconds Time to advance time step: 0.231037142 Call to estdt for level 0 gives dt_lev = 0.4621907805 Call to estdt for level 1 gives dt_lev = 0.3237148621 Call to estdt for level 2 gives dt_lev = 0.2282385675 Minimum estdt over all levels = 0.2282385675 Call to estdt at beginning of step 2 gives dt =0.2282385675 dt_growth factor limits the new dt = 0.0005959182564  Timestep 2 starts with TIME = 0.0005417438695 DT = 0.0005959182564 Cell Count: Level 0, 10240 cells Level 1, 6144 cells Level 2, 18432 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1393713.485 MLMG: Initial residual (resid0) = 1393713.485 MLMG: Final Iter. 6 resid, resid/bnorm = 0.01301109567, 9.335559861e-09 MLMG: Timers: Solve = 0.007201954 Iter = 0.006547679 Bottom = 0.000170789 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1393713.993 MLMG: Initial residual (resid0) = 4319.004077 MLMG: Final Iter. 4 resid, resid/bnorm = 0.0009249956682, 6.636911685e-10 MLMG: Timers: Solve = 0.005065253 Iter = 0.004455393 Bottom = 0.000116861 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7165134.692 MLMG: Initial residual (resid0) = 7165134.692 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0002225955759, 3.10664887e-11 MLMG: Timers: Solve = 0.017511882 Iter = 0.016855346 Bottom = 0.000224669 Done calling nodal solver Timestep 2 ends with TIME = 0.001137662126 DT = 0.0005959182564 Timing summary: Advection :0.048249234 seconds MAC Proj :0.015892272 seconds Nodal Proj :0.022637017 seconds Reactions :0.117952257 seconds Misc :0.023434262 seconds Base State :0.000809901 seconds Time to advance time step: 0.228417308 Call to estdt for level 0 gives dt_lev = 0.4623016567 Call to estdt for level 1 gives dt_lev = 0.3238059212 Call to estdt for level 2 gives dt_lev = 0.2283160255 Minimum estdt over all levels = 0.2283160255 Call to estdt at beginning of step 3 gives dt =0.2283160255 dt_growth factor limits the new dt = 0.000655510082  Timestep 3 starts with TIME = 0.001137662126 DT = 0.000655510082 Cell Count: Level 0, 10240 cells Level 1, 6144 cells Level 2, 18432 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2106885.503 MLMG: Initial residual (resid0) = 2106885.503 MLMG: Final Iter. 6 resid, resid/bnorm = 0.01652645152, 7.844019758e-09 MLMG: Timers: Solve = 0.00721803 Iter = 0.006626828 Bottom = 0.00019463 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2106886.062 MLMG: Initial residual (resid0) = 501.8146569 MLMG: Final Iter. 3 resid, resid/bnorm = 0.007335911348, 3.481873786e-09 MLMG: Timers: Solve = 0.00433287 Iter = 0.003406424 Bottom = 8.7982e-05 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7881715.48 MLMG: Initial residual (resid0) = 7881715.48 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0002476093505, 3.14156672e-11 MLMG: Timers: Solve = 0.017395745 Iter = 0.016832858 Bottom = 0.000225959 Done calling nodal solver Timestep 3 ends with TIME = 0.001793172208 DT = 0.000655510082 Timing summary: Advection :0.047951364 seconds MAC Proj :0.015217613 seconds Nodal Proj :0.022359636 seconds Reactions :0.118135167 seconds Misc :0.023658901 seconds Base State :0.000815363 seconds Time to advance time step: 0.227570317 Writing plotfile 3 inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.090062224 Total Time: 2.359609715 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble_2d_amr_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.plot_file(nvals = 1) :: [reacting_bubble_2d_amr_plt] AMReX (26.06-13-g87eac2327e9f) finalized