Initializing AMReX (26.07-20-g950d60e48284)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 AMReX (26.07-20-g950d60e48284) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble_3d_pltInitData after InitData inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 3.007950952 inner sponge: r_sp , r_tp : 186468750, 224718750 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.020705844 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble_3d_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 2.985298477 Call to firstdt for level 0 gives dt_lev = 0.0004741795139 Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795139 Minimum firstdt over all levels = 0.0004741795139 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 2054.815795 MLMG: Initial residual (resid0) = 2054.815795 MLMG: Final Iter. 7 resid, resid/bnorm = 5.614158027e-10, 2.732195285e-13 MLMG: Timers: Solve = 0.66106013 Iter = 0.640813463 Bottom = 0.007165485 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.1719927642 Minimum estdt over all levels = 0.1719927642 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1719927642 Multiplying dt by init_shrink; dt = 0.1719927642 Ignoring this new dt since it's larger than the previous dt = 0.0004741795139 Writing plotfile reacting_bubble_3d_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 2.983540633 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2728631.973 MLMG: Initial residual (resid0) = 2728631.973 MLMG: Final Iter. 9 resid, resid/bnorm = 1.611048356e-05, 5.904234691e-12 MLMG: Timers: Solve = 0.385071953 Iter = 0.370051739 Bottom = 0.008888608 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2728627.792 MLMG: Initial residual (resid0) = 8729.745165 MLMG: Final Iter. 5 resid, resid/bnorm = 0.0002251341939, 8.250820966e-11 MLMG: Timers: Solve = 0.221171307 Iter = 0.206103343 Bottom = 0.005217703 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.157552615e+10 MLMG: Initial residual (resid0) = 1.157552615e+10 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002752363682, 2.37774391e-13 MLMG: Timers: Solve = 0.665004683 Iter = 0.645247191 Bottom = 0.007370252 Done calling nodal solver Timestep 0 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :2.13290626 seconds MAC Proj :0.695475247 seconds Nodal Proj :0.870723802 seconds Reactions :4.882802946 seconds Misc :0.797954583 seconds Base State :0.004907428 seconds Time to advance time step: 9.39789451 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 2.97298775 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1308380.202 MLMG: Initial residual (resid0) = 1308380.202 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001225722517, 9.368244148e-11 MLMG: Timers: Solve = 0.346047954 Iter = 0.331012306 Bottom = 0.008096833 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1308380.236 MLMG: Initial residual (resid0) = 0.9822511362 MLMG: Final Iter. 4 resid, resid/bnorm = 3.561760968e-05, 2.72226748e-11 MLMG: Timers: Solve = 0.182291564 Iter = 0.16732531 Bottom = 0.004408755 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 5488883.985 MLMG: Initial residual (resid0) = 5488883.985 MLMG: Final Iter. 7 resid, resid/bnorm = 1.273612725e-06, 2.320349142e-13 MLMG: Timers: Solve = 0.668116174 Iter = 0.648203687 Bottom = 0.007098645 Done calling nodal solver Timestep 1 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :2.182762653 seconds MAC Proj :0.620452459 seconds Nodal Proj :0.878533007 seconds Reactions :4.814054485 seconds Misc :0.769573086 seconds Base State :0.004862473 seconds Time to advance time step: 9.271398156 Call to estdt for level 0 gives dt_lev = 0.2012294718 Minimum estdt over all levels = 0.2012294718 Call to estdt at beginning of step 2 gives dt =0.2012294718 dt_growth factor limits the new dt = 0.0005215974653  Timestep 2 starts with TIME = 0.0004741795139 DT = 0.0005215974653 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1426181.405 MLMG: Initial residual (resid0) = 1426181.405 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001354867418, 9.499965521e-11 MLMG: Timers: Solve = 0.348911224 Iter = 0.333872961 Bottom = 0.007988976 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1426184.06 MLMG: Initial residual (resid0) = 5132.459651 MLMG: Final Iter. 6 resid, resid/bnorm = 3.079236194e-05, 2.159073488e-11 MLMG: Timers: Solve = 0.26473374 Iter = 0.249650088 Bottom = 0.006751764 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6063789.798 MLMG: Initial residual (resid0) = 6063789.798 MLMG: Final Iter. 7 resid, resid/bnorm = 1.418645127e-06, 2.339535462e-13 MLMG: Timers: Solve = 0.663903123 Iter = 0.643873448 Bottom = 0.007663252 Done calling nodal solver Timestep 2 ends with TIME = 0.0009957769792 DT = 0.0005215974653 Timing summary: Advection :2.195765837 seconds MAC Proj :0.709141332 seconds Nodal Proj :0.872646943 seconds Reactions :4.784427643 seconds Misc :0.784340871 seconds Base State :0.00494653 seconds Time to advance time step: 9.352658952 Call to estdt for level 0 gives dt_lev = 0.20128497 Minimum estdt over all levels = 0.20128497 Call to estdt at beginning of step 3 gives dt =0.20128497 dt_growth factor limits the new dt = 0.0005737572118  Timestep 3 starts with TIME = 0.0009957769792 DT = 0.0005737572118 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1597942.993 MLMG: Initial residual (resid0) = 1597942.993 MLMG: Final Iter. 8 resid, resid/bnorm = 0.000151760134, 9.497218277e-11 MLMG: Timers: Solve = 0.356229761 Iter = 0.341145101 Bottom = 0.007832587 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1597945.914 MLMG: Initial residual (resid0) = 5863.170846 MLMG: Final Iter. 6 resid, resid/bnorm = 3.355391459e-05, 2.099815413e-11 MLMG: Timers: Solve = 0.264048798 Iter = 0.248997962 Bottom = 0.006215537 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6670310.291 MLMG: Initial residual (resid0) = 6670310.291 MLMG: Final Iter. 7 resid, resid/bnorm = 4.503816311e-06, 6.752034185e-13 MLMG: Timers: Solve = 0.662248415 Iter = 0.642361412 Bottom = 0.007734948 Done calling nodal solver Timestep 3 ends with TIME = 0.001569534191 DT = 0.0005737572118 Timing summary: Advection :2.151126216 seconds MAC Proj :0.709703656 seconds Nodal Proj :0.874023419 seconds Reactions :4.790781447 seconds Misc :0.786925594 seconds Base State :0.004868462 seconds Time to advance time step: 9.317214488 Writing plotfile 3 inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 3.042660419 Total Time: 56.95587673 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble_3d_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.plot_file(nvals = 1) :: [reacting_bubble_3d_plt] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] AMReX (26.07-20-g950d60e48284) finalized