Initializing AMReX (26.08-15-g59d066aab774)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 AMReX (26.08-15-g59d066aab774) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble_3d_pltInitData after InitData inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 3.104008728 inner sponge: r_sp , r_tp : 186468750, 224718750 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.022342503 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble_3d_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 3.082719431 Call to firstdt for level 0 gives dt_lev = 0.0004741795139 Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795139 Minimum firstdt over all levels = 0.0004741795139 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 2054.815795 MLMG: Initial residual (resid0) = 2054.815795 MLMG: Final Iter. 7 resid, resid/bnorm = 5.605080844e-10, 2.727777768e-13 MLMG: Timers: Solve = 0.695635526 Iter = 0.673891177 Bottom = 0.007629764 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.1719927642 Minimum estdt over all levels = 0.1719927642 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1719927642 Multiplying dt by init_shrink; dt = 0.1719927642 Ignoring this new dt since it's larger than the previous dt = 0.0004741795139 Writing plotfile reacting_bubble_3d_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 3.096195363 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2728631.973 MLMG: Initial residual (resid0) = 2728631.973 MLMG: Final Iter. 9 resid, resid/bnorm = 1.618242823e-05, 5.930601263e-12 MLMG: Timers: Solve = 0.386441091 Iter = 0.371479903 Bottom = 0.008762873 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2728627.792 MLMG: Initial residual (resid0) = 8729.745164 MLMG: Final Iter. 5 resid, resid/bnorm = 0.0002251348342, 8.250844431e-11 MLMG: Timers: Solve = 0.222432513 Iter = 0.207423983 Bottom = 0.004898385 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.157552615e+10 MLMG: Initial residual (resid0) = 1.157552615e+10 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002730656447, 2.358991212e-13 MLMG: Timers: Solve = 0.681000116 Iter = 0.659572082 Bottom = 0.0072969 Done calling nodal solver Timestep 0 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :2.1400303 seconds MAC Proj :0.699897525 seconds Nodal Proj :0.885103572 seconds Reactions :5.227611837 seconds Misc :0.774297434 seconds Base State :0.004899372 seconds Time to advance time step: 9.746627269 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 3.079618565 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1308380.202 MLMG: Initial residual (resid0) = 1308380.202 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001254937524, 9.591535566e-11 MLMG: Timers: Solve = 0.348815882 Iter = 0.33387588 Bottom = 0.008833135 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1308380.236 MLMG: Initial residual (resid0) = 0.982250707 MLMG: Final Iter. 4 resid, resid/bnorm = 3.546516382e-05, 2.710615985e-11 MLMG: Timers: Solve = 0.187658248 Iter = 0.172077751 Bottom = 0.004785424 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 5488883.985 MLMG: Initial residual (resid0) = 5488883.985 MLMG: Final Iter. 7 resid, resid/bnorm = 1.271813491e-06, 2.317071183e-13 MLMG: Timers: Solve = 0.692779119 Iter = 0.670950046 Bottom = 0.008648689 Done calling nodal solver Timestep 1 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :2.250458347 seconds MAC Proj :0.629333589 seconds Nodal Proj :0.902623194 seconds Reactions :5.253098592 seconds Misc :0.765219264 seconds Base State :0.005029933 seconds Time to advance time step: 9.808036838 Call to estdt for level 0 gives dt_lev = 0.2012294718 Minimum estdt over all levels = 0.2012294718 Call to estdt at beginning of step 2 gives dt =0.2012294718 dt_growth factor limits the new dt = 0.0005215974653  Timestep 2 starts with TIME = 0.0004741795139 DT = 0.0005215974653 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1426181.405 MLMG: Initial residual (resid0) = 1426181.405 MLMG: Final Iter. 8 resid, resid/bnorm = 0.000136321396, 9.558489226e-11 MLMG: Timers: Solve = 0.351887452 Iter = 0.336652049 Bottom = 0.006848041 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1426184.06 MLMG: Initial residual (resid0) = 5132.459664 MLMG: Final Iter. 6 resid, resid/bnorm = 3.058268703e-05, 2.144371675e-11 MLMG: Timers: Solve = 0.267408397 Iter = 0.25205825 Bottom = 0.006581748 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6063789.798 MLMG: Initial residual (resid0) = 6063789.798 MLMG: Final Iter. 7 resid, resid/bnorm = 1.377245462e-06, 2.27126188e-13 MLMG: Timers: Solve = 0.684397302 Iter = 0.663175603 Bottom = 0.007200787 Done calling nodal solver Timestep 2 ends with TIME = 0.0009957769792 DT = 0.0005215974653 Timing summary: Advection :2.167573304 seconds MAC Proj :0.713955831 seconds Nodal Proj :0.89385992 seconds Reactions :5.175713889 seconds Misc :0.776905865 seconds Base State :0.004935752 seconds Time to advance time step: 9.734079894 Call to estdt for level 0 gives dt_lev = 0.20128497 Minimum estdt over all levels = 0.20128497 Call to estdt at beginning of step 3 gives dt =0.20128497 dt_growth factor limits the new dt = 0.0005737572118  Timestep 3 starts with TIME = 0.0009957769792 DT = 0.0005737572118 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1597942.993 MLMG: Initial residual (resid0) = 1597942.993 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001530745358, 9.579474136e-11 MLMG: Timers: Solve = 0.349068878 Iter = 0.333879638 Bottom = 0.00872521 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1597945.914 MLMG: Initial residual (resid0) = 5863.170843 MLMG: Final Iter. 6 resid, resid/bnorm = 3.355229319e-05, 2.099713945e-11 MLMG: Timers: Solve = 0.265160664 Iter = 0.249950451 Bottom = 0.006234336 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6670310.291 MLMG: Initial residual (resid0) = 6670310.291 MLMG: Final Iter. 7 resid, resid/bnorm = 4.735865208e-06, 7.099917397e-13 MLMG: Timers: Solve = 0.683908997 Iter = 0.662681659 Bottom = 0.008226899 Done calling nodal solver Timestep 3 ends with TIME = 0.001569534191 DT = 0.0005737572118 Timing summary: Advection :2.171917388 seconds MAC Proj :0.707216657 seconds Nodal Proj :0.895611169 seconds Reactions :5.175537949 seconds Misc :0.778771389 seconds Base State :0.004885849 seconds Time to advance time step: 9.733549443 Writing plotfile 3 inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 3.117722955 Total Time: 59.32415545 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble_3d_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.plot_file(nvals = 1) :: [reacting_bubble_3d_plt] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] AMReX (26.08-15-g59d066aab774) finalized