Initializing AMReX (26.09-13-gb105892be1b2)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 AMReX (26.09-13-gb105892be1b2) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 2250000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 91 radius at r_cutoff 205875000 Maximum HSE Error = 0.006358 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 1 dr of MAESTRO base state = 1125000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 182 radius at r_cutoff 205312500 Maximum HSE Error = 0.001719 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 2 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble_3d_amr_pltInitData after InitData inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.584013051 inner sponge: r_sp , r_tp : 187875000, 223875000 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.004798125 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble_3d_amr_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.580995348 Call to firstdt for level 0 gives dt_lev = 0.001900185702 Multiplying dt_lev by init_shrink; dt_lev = 0.001900185702 Call to firstdt for level 1 gives dt_lev = 0.001145985589 Multiplying dt_lev by init_shrink; dt_lev = 0.001145985589 Call to firstdt for level 2 gives dt_lev = 0.0005809423507 Multiplying dt_lev by init_shrink; dt_lev = 0.0005809423507 Minimum firstdt over all levels = 0.0005809423507 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 3375.753789 MLMG: Initial residual (resid0) = 3375.753789 MLMG: Final Iter. 8 resid, resid/bnorm = 3.888413034e-08, 1.151865117e-11 MLMG: Timers: Solve = 0.146349964 Iter = 0.141364559 Bottom = 0.002102834 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.3446506058 Call to estdt for level 1 gives dt_lev = 0.2371958412 Call to estdt for level 2 gives dt_lev = 0.166684761 Minimum estdt over all levels = 0.166684761 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.166684761 Multiplying dt by init_shrink; dt = 0.166684761 Ignoring this new dt since it's larger than the previous dt = 0.0005809423507 Writing plotfile reacting_bubble_3d_amr_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.583894036 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3473324.294 MLMG: Initial residual (resid0) = 3473324.294 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002037143335, 5.865111237e-10 MLMG: Timers: Solve = 0.053054807 Iter = 0.04960664 Bottom = 0.001821911 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3473321.253 MLMG: Initial residual (resid0) = 152.3725371 MLMG: Final Iter. 3 resid, resid/bnorm = 0.00768269901, 2.211917197e-09 MLMG: Timers: Solve = 0.025405656 Iter = 0.022161331 Bottom = 0.000767288 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.202681384e+10 MLMG: Initial residual (resid0) = 1.202681384e+10 MLMG: Final Iter. 9 resid, resid/bnorm = 0.1904349327, 1.583419642e-11 MLMG: Timers: Solve = 0.165040638 Iter = 0.160530903 Bottom = 0.00266417 Done calling nodal solver Timestep 0 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.540997415 seconds MAC Proj :0.096112153 seconds Nodal Proj :0.204808827 seconds Reactions :0.830269266 seconds Misc :0.177897989 seconds Base State :0.003448491 seconds Time to advance time step: 1.853852272 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.579355362 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1593952.754 MLMG: Initial residual (resid0) = 1593952.754 MLMG: Final Iter. 6 resid, resid/bnorm = 0.006032507634, 3.784621356e-09 MLMG: Timers: Solve = 0.046378397 Iter = 0.043133051 Bottom = 0.001843785 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1593952.784 MLMG: Initial residual (resid0) = 0.8173301344 MLMG: Final Iter. 1 resid, resid/bnorm = 0.008522350576, 5.346676928e-09 MLMG: Timers: Solve = 0.01123203 Iter = 0.008001013 Bottom = 0.000310829 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6986896.708 MLMG: Initial residual (resid0) = 6986896.708 MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001106348936, 1.583462562e-11 MLMG: Timers: Solve = 0.162760558 Iter = 0.158214886 Bottom = 0.002613104 Done calling nodal solver Timestep 1 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.534896524 seconds MAC Proj :0.075217372 seconds Nodal Proj :0.202976548 seconds Reactions :0.825979467 seconds Misc :0.17380329 seconds Base State :0.003536296 seconds Time to advance time step: 1.816637447 Call to estdt for level 0 gives dt_lev = 0.412175951 Call to estdt for level 1 gives dt_lev = 0.2828508348 Call to estdt for level 2 gives dt_lev = 0.1985511177 Minimum estdt over all levels = 0.1985511177 Call to estdt at beginning of step 2 gives dt =0.1985511177 dt_growth factor limits the new dt = 0.0006390365858  Timestep 2 starts with TIME = 0.0005809423507 DT = 0.0006390365858 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 862408.8759 MLMG: Initial residual (resid0) = 862408.8759 MLMG: Final Iter. 6 resid, resid/bnorm = 0.005907616112, 6.85013371e-09 MLMG: Timers: Solve = 0.046371865 Iter = 0.043135162 Bottom = 0.001611756 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 862410.8781 MLMG: Initial residual (resid0) = 10430.25526 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001076961365, 1.248779895e-09 MLMG: Timers: Solve = 0.032384971 Iter = 0.029192435 Bottom = 0.000978084 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7717168.58 MLMG: Initial residual (resid0) = 7717168.58 MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001205918379, 1.562643561e-11 MLMG: Timers: Solve = 0.163702681 Iter = 0.159138011 Bottom = 0.002789512 Done calling nodal solver Timestep 2 ends with TIME = 0.001219978937 DT = 0.0006390365858 Timing summary: Advection :0.543340947 seconds MAC Proj :0.096305762 seconds Nodal Proj :0.204242806 seconds Reactions :0.825155772 seconds Misc :0.176292595 seconds Base State :0.003414083 seconds Time to advance time step: 1.848187459 Call to estdt for level 0 gives dt_lev = 0.4123222102 Call to estdt for level 1 gives dt_lev = 0.2829378855 Call to estdt for level 2 gives dt_lev = 0.198620561 Minimum estdt over all levels = 0.198620561 Call to estdt at beginning of step 3 gives dt =0.198620561 dt_growth factor limits the new dt = 0.0007029402444  Timestep 3 starts with TIME = 0.001219978937 DT = 0.0007029402444 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 978885.4093 MLMG: Initial residual (resid0) = 978885.4093 MLMG: Final Iter. 6 resid, resid/bnorm = 0.006846101955, 6.993772601e-09 MLMG: Timers: Solve = 0.04676548 Iter = 0.043546384 Bottom = 0.001777078 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 978885.8288 MLMG: Initial residual (resid0) = 1095.742844 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001084095227, 1.107478723e-09 MLMG: Timers: Solve = 0.033591586 Iter = 0.03037796 Bottom = 0.000929244 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 8489041.685 MLMG: Initial residual (resid0) = 8489041.685 MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001307190396, 1.539856258e-11 MLMG: Timers: Solve = 0.165277218 Iter = 0.160734651 Bottom = 0.002702812 Done calling nodal solver Timestep 3 ends with TIME = 0.001922919181 DT = 0.0007029402444 Timing summary: Advection :0.54097919 seconds MAC Proj :0.098108351 seconds Nodal Proj :0.205534434 seconds Reactions :0.825228315 seconds Misc :0.175160964 seconds Base State :0.003423274 seconds Time to advance time step: 1.847056276 Writing plotfile 3 inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.594167442 Total Time: 11.92316512 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble_3d_amr_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.plot_file(nvals = 1) :: [reacting_bubble_3d_amr_plt] AMReX (26.09-13-gb105892be1b2) finalized