Initializing AMReX (26.09-42-gab27bcd92650)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 AMReX (26.09-42-gab27bcd92650) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 2250000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 91 radius at r_cutoff 205875000 Maximum HSE Error = 0.006358 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 1 dr of MAESTRO base state = 1125000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 182 radius at r_cutoff 205312500 Maximum HSE Error = 0.001719 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 2 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble_2d_amr_pltInitData after InitData inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.109467922 inner sponge: r_sp , r_tp : 187875000, 223875000 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.001127372 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble_2d_amr_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.1208356 Call to firstdt for level 0 gives dt_lev = 0.001900186535 Multiplying dt_lev by init_shrink; dt_lev = 0.001900186535 Call to firstdt for level 1 gives dt_lev = 0.001060149082 Multiplying dt_lev by init_shrink; dt_lev = 0.001060149082 Call to firstdt for level 2 gives dt_lev = 0.0005417438695 Multiplying dt_lev by init_shrink; dt_lev = 0.0005417438695 Minimum firstdt over all levels = 0.0005417438695 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 12829.54334 MLMG: Initial residual (resid0) = 12829.54334 MLMG: Final Iter. 4 resid, resid/bnorm = 0.002447886588, 1.908007574e-07 MLMG: Timers: Solve = 0.009022755 Iter = 0.00846844 Bottom = 0.000131227 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.3355212738 Call to estdt for level 1 gives dt_lev = 0.2352464797 Call to estdt for level 2 gives dt_lev = 0.1661095905 Minimum estdt over all levels = 0.1661095905 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1661095905 Multiplying dt by init_shrink; dt = 0.1661095905 Ignoring this new dt since it's larger than the previous dt = 0.0005417438695 Writing plotfile reacting_bubble_2d_amr_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.091646287 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0005417438695 Cell Count: Level 0, 10240 cells Level 1, 6144 cells Level 2, 18432 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3239326.635 MLMG: Initial residual (resid0) = 3239326.635 MLMG: Final Iter. 7 resid, resid/bnorm = 0.01097363734, 3.387629152e-09 MLMG: Timers: Solve = 0.008370991 Iter = 0.007643636 Bottom = 0.000236488 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3239323.796 MLMG: Initial residual (resid0) = 725.3963012 MLMG: Final Iter. 3 resid, resid/bnorm = 0.003112709081, 9.609132265e-10 MLMG: Timers: Solve = 0.003995961 Iter = 0.003406322 Bottom = 8.8613e-05 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.199753161e+10 MLMG: Initial residual (resid0) = 1.199753161e+10 MLMG: Final Iter. 8 resid, resid/bnorm = 0.3725355417, 3.105101565e-11 MLMG: Timers: Solve = 0.017331424 Iter = 0.016784054 Bottom = 0.000219533 Done calling nodal solver Timestep 0 ends with TIME = 0.0005417438695 DT = 0.0005417438695 Timing summary: Advection :0.048356673 seconds MAC Proj :0.016129242 seconds Nodal Proj :0.022559687 seconds Reactions :0.126184409 seconds Misc :0.023188931 seconds Base State :0.000806364 seconds Time to advance time step: 0.242287792 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.092265938 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0005417438695 Cell Count: Level 0, 10240 cells Level 1, 6144 cells Level 2, 18432 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 942189.5179 MLMG: Initial residual (resid0) = 942189.5179 MLMG: Final Iter. 7 resid, resid/bnorm = 0.0007745440307, 8.22068189e-10 MLMG: Timers: Solve = 0.008266932 Iter = 0.007653934 Bottom = 0.000225421 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 942189.5506 MLMG: Initial residual (resid0) = 1.10171954 MLMG: Final Iter. 1 resid, resid/bnorm = 0.00600921992, 6.377930976e-09 MLMG: Timers: Solve = 0.001905985 Iter = 0.001296524 Bottom = 3.9162e-05 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6499597.232 MLMG: Initial residual (resid0) = 6499597.232 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0002018142477, 3.105026981e-11 MLMG: Timers: Solve = 0.017657529 Iter = 0.016865987 Bottom = 0.00023322 Done calling nodal solver Timestep 1 ends with TIME = 0.0005417438695 DT = 0.0005417438695 Timing summary: Advection :0.048140841 seconds MAC Proj :0.013798283 seconds Nodal Proj :0.022633412 seconds Reactions :0.125676787 seconds Misc :0.023038284 seconds Base State :0.000794181 seconds Time to advance time step: 0.239299193 Call to estdt for level 0 gives dt_lev = 0.4621907805 Call to estdt for level 1 gives dt_lev = 0.3237148621 Call to estdt for level 2 gives dt_lev = 0.2282385675 Minimum estdt over all levels = 0.2282385675 Call to estdt at beginning of step 2 gives dt =0.2282385675 dt_growth factor limits the new dt = 0.0005959182564  Timestep 2 starts with TIME = 0.0005417438695 DT = 0.0005959182564 Cell Count: Level 0, 10240 cells Level 1, 6144 cells Level 2, 18432 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1393713.485 MLMG: Initial residual (resid0) = 1393713.485 MLMG: Final Iter. 6 resid, resid/bnorm = 0.01301109547, 9.33555972e-09 MLMG: Timers: Solve = 0.007186621 Iter = 0.006585194 Bottom = 0.000176977 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1393713.993 MLMG: Initial residual (resid0) = 4319.004077 MLMG: Final Iter. 4 resid, resid/bnorm = 0.0009249955831, 6.636911074e-10 MLMG: Timers: Solve = 0.005055437 Iter = 0.004464362 Bottom = 0.000120208 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7165134.692 MLMG: Initial residual (resid0) = 7165134.692 MLMG: Final Iter. 8 resid, resid/bnorm = 0.000222589988, 3.106570882e-11 MLMG: Timers: Solve = 0.017319335 Iter = 0.016746173 Bottom = 0.000229879 Done calling nodal solver Timestep 2 ends with TIME = 0.001137662126 DT = 0.0005959182564 Timing summary: Advection :0.048547742 seconds MAC Proj :0.015842786 seconds Nodal Proj :0.022294798 seconds Reactions :0.125470594 seconds Misc :0.023278171 seconds Base State :0.000803041 seconds Time to advance time step: 0.235699003 Call to estdt for level 0 gives dt_lev = 0.4623016567 Call to estdt for level 1 gives dt_lev = 0.3238059212 Call to estdt for level 2 gives dt_lev = 0.2283160255 Minimum estdt over all levels = 0.2283160255 Call to estdt at beginning of step 3 gives dt =0.2283160255 dt_growth factor limits the new dt = 0.000655510082  Timestep 3 starts with TIME = 0.001137662126 DT = 0.000655510082 Cell Count: Level 0, 10240 cells Level 1, 6144 cells Level 2, 18432 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2106885.503 MLMG: Initial residual (resid0) = 2106885.503 MLMG: Final Iter. 6 resid, resid/bnorm = 0.01652645135, 7.844019678e-09 MLMG: Timers: Solve = 0.007230245 Iter = 0.006636651 Bottom = 0.000199298 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2106886.062 MLMG: Initial residual (resid0) = 501.8146569 MLMG: Final Iter. 3 resid, resid/bnorm = 0.007335910326, 3.481873301e-09 MLMG: Timers: Solve = 0.004014122 Iter = 0.003411141 Bottom = 9.8021e-05 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7881715.48 MLMG: Initial residual (resid0) = 7881715.48 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0002476074878, 3.141543087e-11 MLMG: Timers: Solve = 0.017374671 Iter = 0.016812804 Bottom = 0.000278671 Done calling nodal solver Timestep 3 ends with TIME = 0.001793172208 DT = 0.000655510082 Timing summary: Advection :0.047592306 seconds MAC Proj :0.014829736 seconds Nodal Proj :0.022698946 seconds Reactions :0.126076499 seconds Misc :0.023607235 seconds Base State :0.000814138 seconds Time to advance time step: 0.235075329 Writing plotfile 3 inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.092025456 Total Time: 2.486317179 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble_2d_amr_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.plot_file(nvals = 1) :: [reacting_bubble_2d_amr_plt] AMReX (26.09-42-gab27bcd92650) finalized